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United States Department of Agriculture

Agricultural Research Service

Research Project: Biology and Biological Control of Root Diseases of Wheat, Barley and Biofuel Brassicas

Location: Root Disease and Biological Control Research

Title: Trapped intermediates in crystals of the FMN-dependent oxidase PhzG provide insight into the final steps of phenazine biosynthesis

Authors
item Xu, Ningna -
item Ahuja, Ekta Gayanji -
item Janning, Peter -
item Mavrodi, Dmitri -
item Thomashow, Linda
item Blankenfeldt, Wulf -

Submitted to: Acta Crystallographica, Section D: Biological Crystallography
Publication Type: Peer Reviewed Journal
Publication Acceptance Date: March 26, 2013
Publication Date: July 13, 2013
Citation: Xu, N., Ahuja, E., Janning, P., Mavrodi, D.V., Thomashow, L.S., Blankenfeldt, W. 2013. Trapped intermediates in crystals of the FMN-dependent oxidase PhzG provide insight into the final steps of phenazine biosynthesis. Acta Crystallographica, Section D: Biological Crystallography. D69, 1403-1413.

Interpretive Summary: Phenazines are redox-active secondary metabolites that many bacteria produce and secrete into the environment. They are broad-specificity antibiotics, but also act as virulence and survival factors in infectious diseases. Phenazines are derived from chorismic acid, but important details of their biosynthesis are still unclear. For example, three two-electron oxidations seem to be necessary in the final steps of the pathway, while only one oxidase, the FMN-dependent PhzG, is conserved in the phenazine-biosynthesis phz operon. Here, crystal structures of PhzG from Pseudomonas fluorescens 2-79 and from Burkholderia lata 383 in complex with excess FMN and with the phenazine-biosynthesis intermediates hexahydrophenazine-1,6-dicarboxylate and tetrahydrophenazine-1-carboxylate generated in situ are reported. Corroborated with biochemical data, these complexes demonstrate that PhzG is the terminal enzyme in phenazine biosynthesis and that its relaxed substrate specificity lets it participate in the generation of both phenazine-1,6-dicarboxylic acid (PDC) and phenazine- 1-carboxylic acid (PCA). This suggests that competition between flavin-dependent oxidations through PhzG and spontaneous oxidative decarboxylations determines the ratio of PDC, PCA and unsubstituted phenazine as the products of phenazine biosynthesis. Further, the results indicate that PhzG synthesizes phenazines in their reduced form. These reduced molecules, and not the fully aromatized derivatives, are the likely end products in vivo, explaining why only one oxidase isrequired in the phenazine-biosynthesis pathway.

Technical Abstract: Phenazine compounds produced by certain species of bacteria have antibiotic activity against a wide range of bacterial and fungal pathogens including many that cause important root diseases of plants. The antibiotic activity of these compounds has long been known but the mechanism of synthesis is poorly understood, making it difficult to fully exploit their biological potential. This paper reports the structure and biological activity of PhzG, shown here to be the final enzyme in the phenazine biosynthesis pathway. The paper also describes the catalytic mechanism by which PhzG acts to synthesize the core skeleton of the phenazine molecule. These analyses provide novel insight not only into phenazine synthesis, but also into the activity of several other genes identified through recent genomic sequencing efforts.

Last Modified: 10/1/2014
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