Peanut Research Site Logo
ARS Home About Us Helptop nav spacerContact Us En Espanoltop nav spacer
Printable VersionPrintable Version     E-mail this pageE-mail this page
Agricultural Research Service United States Department of Agriculture
Search
  Advanced Search
 
Programs and Projects
Subjects of Investigation
Peanut Biodiesel
Videos
Video Selection
Mycotoxin Research
Production Research
Post Harvest Research
Expert Systems
Chemistry
Peanut Breeding and Genetics
Biochemistry
UPPT
 

Research Project: GENETICS, POPULATION DYNAMICS, AND MYCOTOXIN PREVENTION IN PEANUT

Location: Peanut Research

Title: UPIC: Perl scripts to determine the number of SSR markers to run

Authors

Submitted to: Meeting Proceedings
Publication Type: Other
Publication Acceptance Date: June 21, 2009
Publication Date: July 29, 2009
Citation: Arias, R.S., Ballard, L.L., Scheffler, B.E. 2009. UPIC: Perl scripts to determine the number of SSR markers to run. Molecular markers in Horticulture Symposium, July 29-31, 2009, Corvallis, Oregon State University. Meeting Proceedings.

Interpretive Summary: not required.

Technical Abstract: We have developed Perl Scripts for the cost-effective planning of fingerprinting and genotyping experiments. The UPIC scripts detect the best combination of polymorphic simple sequence repeat (SSR) markers and provide coefficients of the amount of information obtainable (number of alleles of patterns) for each combination of markers. In addition, the Perl Script package calculates polymorphic information content (PIC) values for various types of fertilization in organisms, and the percentage of heterozygous loci for each DNA sample. UPIC group of scripts is a very useful tool to plan experiments maximizing the information obtainable at the lowest cost.

   

 
Project Team
Horn, Bruce
Arias De Ares, Renee
Lamb, Marshall
Sobolev, Victor
 
Publications
   Publications
 
Related National Programs
  Food Safety, (animal and plant products) (108)
  Plant Diseases (303)
 
 
Last Modified: 05/25/2013
ARS Home | USDA.gov | Site Map | Policies and Links 
FOIA | Accessibility Statement | Privacy Policy | Nondiscrimination Statement | Information Quality | USA.gov | White House