Crop Improvement and Protection Research Site Logo
ARS Home About Us Helptop nav spacerContact Us En Espanoltop nav spacer
Printable VersionPrintable Version     E-mail this pageE-mail this page
Agricultural Research Service United States Department of Agriculture
Search
  Advanced Search
 
Programs and Projects
Subjects of Investigation
 

Research Project: EVALUATION, ENHANCEMENT, GENETICS AND BREEDING OF LETTUCE, SPINACH, AND MELON

Location: Crop Improvement and Protection Research

Title: Combining phenotypic data from ordinal rating scales in multiple plant experiments

Authors
item Simko, Ivan
item Piepho, Hans-Peter -

Submitted to: Trends in Plant Science
Publication Type: Peer Reviewed Journal
Publication Acceptance Date: February 12, 2011
Publication Date: May 11, 2011
Citation: Simko, I., Piepho, H. 2011. Combining phenotypic data from ordinal rating scales in multiple plant experiments. Trends in Plant Science. 16:235-237.

Interpretive Summary: While new technologies have considerably improved accuracy and throughput of genotyping, little has changed in a way of acquiring phenotypic data. Slow process of acquiring phenotypic data thus creates a bottleneck in association mapping studies and hinders research progress. One possibility for obtaining data for an association study more rapidly is to combine already available phenotypic information. For example, plant breeders, germplasm curators, and other researchers collect annually a large quantity of phenotypic data that could be combined and used for analysis. Although such datasets are available, combining data from different years, locations, and laboratories, is challenging because they were collected on a different set of accessions and frequently also with different rating scale. Combining data from different trials becomes even more complicated if some of the evaluations were performed on ordinal scales. This paper discusses methods that can be used to combine data from ordinal rating scales into a single dataset.

Technical Abstract: The explosion of genomic data is revolutionizing plant breeding and genetics research, but in most applications good phenotypic data are crucial for making efficient use of genomic data. While new technologies have considerably improved accuracy and throughput of genotyping, relative slowness of methodological advance makes phenotyping the major bottleneck for genomic studies (e.g. linkage mapping, association mapping, genomic selection, marker-assisted selection, etc.). In other applications, good phenotypic data are of interest in themselves, e.g. for assessing the value of accessions in genebanks or breeding programs. Combining data from different trials becomes complicated if some of the evaluations were performed on ordinal scales. This paper discusses methods that can be used to combine data from ordinal rating scales into a single dataset.

   

 
Project Team
McCreight, James - Jim
Hayes, Ryan
Mou, Beiquan
Simko, Ivan
Bull, Carolee
 
Publications
   Publications
 
Related National Programs
  Plant Genetic Resources, Genomics and Genetic Improvement (301)
 
Related Projects
   SPINACH BREEDING AND GENETICS
   Lettuce Breeding and Genetics (USDA)
   Creating new weed management tools for lettuce and spinach production in California
   BREEDING SPRING MIX LETTUCE CULTIVARS WITH DISEASE RESISTANCE FOR CALIFORNIA
   Breeding Heat-Tolerant Lettuce and Spinach Varieties for Adaptation to Global Warming
   NEXT-GENERATION LETTUCE BREEDING: GENES TO GROWERS
   RECURRENT MIGRATIONS OF VERTICILLIUM DAHLIAE: A STEALTHY AND PERVASIVE THREAT TO CALIFORNIA AND U.S. SPECIALTY CROPS
   DROUGHT-TOLERANT LETTUCE AND SPINACH VARIETIES FOR ADAPTATION TO CLIMATE CHANGE
   Screening of lettuce germplasm for resistance to wilt caused by Verticillium Dahliae
   CREATING NEW WEED MANAGEMENT TOOLS FOR LETTUCE AND SPINACH PRODUCTION IN CALIFORNIA
 
 
Last Modified: 05/20/2013
ARS Home | USDA.gov | Site Map | Policies and Links 
FOIA | Accessibility Statement | Privacy Policy | Nondiscrimination Statement | Information Quality | USA.gov | White House