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Germplasm Evaluation and Enhancement
Genomics Core Facility
Molecular Genetics
Molecular Plant Pathology
Molecular Biology
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Weed Physiology
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Rice Genetics and Breeding
 

Research Project: RESPONSE OF DIVERSE RICE GERMPLASM TO BIOTIC AND ABIOTIC STRESSES

Location: Dale Bumpers National Rice Research Center

Title: Gene discovery of crop disease in the postgenome era

Author

Submitted to: Book Chapter
Publication Type: Book / Chapter
Publication Acceptance Date: April 28, 2010
Publication Date: March 18, 2011
Citation: Jia, Y. 2011. Gene discovery of crop disease in the postgenome era. In: Gu, W., Wang, Y., editors. Gene Discovery for Disease Models, 1st edition. John Wiley & Sons, Inc. p. 425-441.

Interpretive Summary: Plant resistance (R) genes provide effective protection against invading pathogens at the front line of defense. Advances in genomic technology have accelerated efforts to characterize a wide range of crop R genes from diverse and economically important crops, resulting in effective crop protection. Thus far, over 100 plant R genes have been molecularly cloned. Most cloned plant R genes were predicted to be receptor proteins with nucleotide binding sites and a leucine rich repeat domain (NBS-LRR). In contrast, the effectors that trigger plant R gene-dependent immunity are random molecules and rapidly evolve. Understanding how plant R genes evolve to recognize the effectors is a challenge in plant biology. The map-based cloning technique is the most commonly used method for plant R gene isolation. This technique involves identification of candidate R genes based on integrated genetic and physical maps using a mapping population and verification of resistant function of R genes using genetic transformation. The techniques for map-based cloning, and structure and function of R genes with emphasis on R genes to the rice blast fungus, the most devastating fungal pathogen of rice, are reviewed.

Technical Abstract: Plant resistance (R) genes provide effective protection against invading pathogens at the front line of defense. Advances in genomic technology have accelerated efforts to characterize a wide range of crop R genes from diverse and economically important crops, resulting in effective crop protection. Thus far, over 100 plant R genes have been molecularly cloned. Most cloned plant R genes were predicted to be receptor proteins with nucleotide binding sites and a leucine rich repeat domain (NBS-LRR). In contrast, the effectors that trigger plant R gene-dependent immunity are random molecules and rapidly evolve. Understanding how plant R genes evolve to recognize the effectors is a challenge in plant biology. The map-based cloning technique is the most commonly used method for plant R gene isolation. This technique involves identification of candidate R genes based on integrated genetic and physical maps using a mapping population and verification of resistant function of R genes using genetic transformation. The techniques for map-based cloning, and structure and function of R genes with emphasis on R genes to the rice blast fungus, the most devastating fungal pathogen of rice, are reviewed.

   

 
Project Team
Gealy, David
Jia, Yulin
Pinson, Shannon
McClung, Anna
McClung, Anna
Eizenga, Georgia
 
Publications
   Publications
 
Related National Programs
  Plant Genetic Resources, Genomics and Genetic Improvement (301)
  Crop Protection & Quarantine (304)
 
 
Last Modified: 06/18/2013
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