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Research Project: DE NOVO SNP DISCOVERY AND GBS-BASED COTTON GENOME MAP DEVELOPMENT

Location: Crop Germplasm Research

Project Number: 6202-21000-030-03
Project Type: Specific Cooperative Agreement

Start Date: Sep 01, 2012
End Date: Aug 31, 2017

Objective:
Jointly develop and characterize cotton SNP markers, and map these markers in the tetraploid cotton genome through cooperative research.

Approach:
A simplified genotyping-by-sequencing (GBS) approach, developed by cooperator's lab of the Biology Department at Texas A&M University, will be used to genotype recombinant inbred lines (RILs) of an interspecific cross between Gossypium hirsutum x G. barbadense (TM-1 x 3-79), developed by ARS PI's Lab at the USDA-ARS Southern Plains Agricultural Research Center, to discover novel single nucleotide polymorphism (SNP) markers and develop an interspecific linkage map of the tetraploid cotton genome.

   

 
Project Team
Yu, John
 
Related National Programs
  Plant Genetic Resources, Genomics and Genetic Improvement (301)
 
 
Last Modified: 05/18/2013
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