Location: Bovine Functional Genomics
Project Number: 1245-31000-104-09
Start Date: Jun 02, 2009
End Date: Aug 31, 2013
Genetic prediction using high-density SNP data will be implemented using MTDFREML. Implementation of more sophisticated strategies will follow using the MTGSAM programs that will be modified to accommodate extensions to the prediction model. Collaboration with a biotechnology company to develop a 384-SNP assay that is expected to dramatically decrease genotyping costs and increase sample throughput. A machine learning approach using a two-step feature subset selection algorithm will be evaluated for SNP selection for this assay. Develop BLUP approaches for the prediction of genetic merit in non-pedigreed populations using molecular relationship matrices. We shall manage this coordination and collaboration via e-mail and teleconference calls, however, we shall also meet at least annually in conjunction with the PAG or ISAG meetings alternating between the US and Europe to coordinate activities.