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United States Department of Agriculture

Agricultural Research Service

Research Project: Sustainable Vineyard Production Systems

Location: Crops Pathology and Genetics Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

A faster infection assay for Armillaria using Herbaceous plants - (Peer Reviewed Journal)
(01-Aug-16)
Effects of winery wastewater on soil, grape nutrition, and wine quality - (Abstract Only)
Hirzel, D., Steenwerth, K.L., Stahel, R.J., Parikh, S., Oberholster, A. 2016. Effects of winery wastewater on soil, grape nutrition, and wine quality. American Society of Enology and Viticulture Annual Meeting Abstracts. 67:94.
Aquaporins and root water relations - (Book / Chapter)
(03-Jun-16)
Identifying economic hurdles of early adoption of preventative practices: The case of trunk diseases in California winegrape vineyards - (Abstract Only)
(01-Jun-16)
A genetic screen for bioluminescence genes in the fungus Armillaria mellea, through the use of Agrobacterium tumefaciens-mediated random insertional mutagenesis - (Abstract Only)
(01-Jun-16)
Water stress exacerbates the severity of Botryosphaeria dieback in grapevines infected by Neofusicoccum parvum - (Abstract Only)
(01-Jun-16)
Host colonization and substrate utilization by wood-colonizing Ascomycete fungi in the grapevine trunk disease complex - (Abstract Only)
(30-May-16)
A native promoter and inclusion of an intron is necessary for efficient expression of GFP or mRFP in Armillaria mellea - (Peer Reviewed Journal)
Ford, K.L., Baumgartner, K., Henricot, B., Bailey, A.M., Foster, G.D. 2016. A native promoter and inclusion of an intron is necessary for efficient expression of GFP or mRFP in Armillaria mellea. Nature Scientific Reports. doi: 10.1038/srep29226.
Identifying economic hurdles to early adoption of trunk disease preventative practices in California winegrape vineyards - (Abstract Only)
(22-Apr-16)
In-situ visualization of the dynamics in xylem embolism formation and removal in the absence of root pressure: A study on excised grapevine stems - (Peer Reviewed Journal)
Knipfer, T., Cuneo, I., Brodersen, C., Mcelrone, A.J. 2016. In-situ visualization of the dynamics in xylem embolism formation and removal in the absence of root pressure: A study on excised grapevine stems. Plant Physiology. 171(2)1024-1036. doi: http://dx.doi.org/10.1104/pp.16.00136.
Plant hydraulics as a hub integrating plant and ecosystem function - (Peer Reviewed Journal)
Sack, L., Ball, M.C., Brodersen, C., Donovan, L.A., Givnish, T.J., Hacke, U.G., Huxman, T., Jansen, S., Jacobsen, A., Johnson, D., Koch, G.W., Maurel, C., Mcculloh, K., Mcelrone, A.J., Meinzer, F.C., Melcher, P.J., North, G., Pellegrini, M., Pratt, B., Santiago, L., Savage, J., Scoffoni, C., Sperry, J., Tyerman, S.D., Holbrook, N. 2016. Plant hydraulics as a hub integrating plant and ecosystem function. Plant Cell and Environment. doi: 10.1111/pce.12732.
Grapevine pruning systems and cultivars influence the diversity of wood-colonizing fungi - (Peer Reviewed Journal)
(14-Feb-16)
Grapevines petioles are more sensitive to drought induced embolism than stems: evidence from in vivo MRI and microCT observations of hydraulic vulnerability segmentation - (Peer Reviewed Journal)
Hochberg, U., Albuqueerque, C., Rachmilevitch, S., Herve, C., David-Schwartz, R., Brodersen, C.R., Mcelrone, A.J., Windt, C.W. 2016. Grapevines petioles are more sensitive to drought induced embolism than stems: evidence from in vivo MRI and microCT observations of hydraulic vulnerability segmentation. Plant Cell and Environment. doi: 10.1111/pce.12688.
Fungal trunk diseases: A problem beyond grapevines? - (Research Notes)
Gramaje, D., Baumgartner, K., Halleen, F., Mostert, L., Urbez-Torres, J.R., Armengol, J. In press. Fungal Trunk Diseases: A Problem Beyond Grapevines? Plant Pathology. 65(3): 355–356. DOI: 10.1111/ppa.12486.
Preventing Trunk Diseases in the Vineyard: Choosing the Best Practices - (Trade Journal)
Baumgartner, K., Travadon, R., Kaplan, J. 2016. Preventing Trunk Diseases in the Vineyard: Choosing the Best Practices. Wine and Viticulture Journal 31(January/ February):51-54.
Making the Case for Disease Prevention in Perfectly Healthy Vineyards - (Abstract Only)
Baumgartner, K., Travadon, R., Cooper, M., Lubell, M., Hillis, V., Kaplan, J. 2015. Making the Case for Disease Prevention in Perfectly Healthy Vineyards. Entomology Society America Annual Meeting. 1832.
The role of pest control advisors in preventative management of grapevine trunk diseases - (Peer Reviewed Journal)
Hillis, V., Lubell, M., Kaplan, J., Doll, D., Baumgartner, K. 2016. The role of pest control advisors in preventative management of grapevine trunk diseases. Phytopathology. 106:339-347. doi: org/10.1094/PHYTO-10-15-0250-R.
Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: Differentiation by vineyard management - (Peer Reviewed Journal)
Burns, K.N., Bokulich, N.A., Cantu, D., Greenhut, R.F., Kluepfel, D.A., O'Geen, A.T., Strauss, S.L., Steenwerth, K.L. 2015. Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: Differentiation by vineyard management. Journal of Soil Biology and Biochemistry. 91:232-247. DOI: 10.1016/j.soilbio.2015.09.002.
Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: differentiation by geographic features     Reprint Icon - (Peer Reviewed Journal)
Burns, K.N., Kluepfel, D.A., Strauss, S.L., Bokulich, N.A., Cantu, D., Steenwerth, K.L. 2015. Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: differentiation by geographic features. Soil Biology and Biochemistry. 91:232-247. doi: 10.1016/j.soilbio.2015.09.002.
Life cycle greenhouse gas and energy assessment of winegrape production in California     Reprint Icon - (Peer Reviewed Journal)
Steenwerth, K.L., Strong, E.B., Greenhut, R.F., Williams, L., Kendall, A. 2015. Life cycle greenhouse gas and energy assessment of winegrape production in California. International Journal of Life Cycle Assessment. 20:1243–1253. doi: 10.1007/s11367-015-0935-2.
Bark water uptake promotes localized hydraulic recovery in coastal redwood crown - (Peer Reviewed Journal)
Earles, J., Sperling, O., Silva, L., Mcelrone, A.J., Brodersen, C.R., North, M., Zwieniecki, M. 2015. Bark water uptake promotes localized hydraulic recovery in coastal redwood crown. Plant Cell and Environment. 39(2):320–328. doi: 10.1111/pce.12612.
Bridging the gaps between scientific literature and grower perceptions of trunk disease management - (Abstract Only)
Baumgartner, K., Travadon, R., Cooper, M., Hillis, V., Lubell, M., Kaplan, J. 2015. Bridging the gaps between scientific literature and grower perceptions of trunk disease management. Workshop Proceedings. European Union COST Workshop on Sustainable Control of Grapevine Trunk Diseases.
A Reliable In Vitro Fruiting System for Armillaria Mellea for Evaluation of Agrobacterium Tumefaciens Transformation Vectors     Reprint Icon - (Peer Reviewed Journal)
Ford, K.L., Baumgartner, K., Henricot, B., Bailey, A.M., Foster, G.D. 2015. A Reliable In Vitro Fruiting System for Armillaria Mellea for Evaluation of Agrobacterium Tumefaciens Transformation Vectors. Fungal Biology. 119:859-869. DOI:10.1016/j.funbio.2015.06.007.
Modelling the economics and efficacy of early adoption of preventative practices for managing trunk diseases - (Abstract Only)
Baumgartner, K., Travadon, R., Cooper, M., Hillis, V., Lubell, M., Kaplan, J. 2015. Modelling the economics and efficacy of early adoption of preventative practices for managing trunk diseases. Meeting Abstract. Australian Society for Viticulture and Oenology Abstracts. June 21-24, 2015, Mildura, Victoria, Australia.
Water transport properties of the grape (V. vinifera L.) pedicel during fruit development: Insights into xylem anatomy and function using microtomography - (Peer Reviewed Journal)
Knipfer, T., Fei, J., Gambetta, G., Mcelrone, A.J., Shackel, K., Matthews, M. 2015. Water transport properties of the grape (V. vinifera L.) pedicel during fruit development: Insights into xylem anatomy and function using microtomography. Plant Physiology. doi: 10.1104/pp.15.00031.
Comparisons of fungal trunk pathogens and endophytic fungi between minimally-pruned and spur-pruned vines in southern France - (Abstract Only)
Travadon, R., Lecomte, P., Diarra, B., Lawrence, D.P., Vallance, J., Oreda, H., Rey, P., Baumgartner, K. 2015. Comparisons of fungal trunk pathogens and endophytic fungi between minimally-pruned and spur-pruned vines in southern France. Group of International Experts of Vitivinicultural Systems for CoOperation(GiESCO). 19th Group of International Experts of Vitivinicultural Systems for CoOperation, December 15, 2014.
Tightly-coupled plant-soil nitrogen cycling: Implications for multiple ecosystem services on organic farms across an intensively managed agricultural landscape - (Peer Reviewed Journal)
Bowles, T.M., Hollander, A.D., Steenwerth, K.L., Jackson, L.E. 2015. Tightly-coupled plant-soil nitrogen cycling: Implications for multiple ecosystem services on organic farms across an intensively managed agricultural landscape. PLoS One. 10(6):e0131888 doi: 10.1371/journal.pone.0131888.
Various fungal communities colonise the functional wood tissues of old grapevines externally free from grapevine trunk disease symptoms - (Peer Reviewed Journal)
Bruez, E., Baumgartner, K., Bastien, S., Travadon, R., Guerin-Dubrana, L., Rey, P. 2016. Various fungal communities colonise the functional wood tissues of old grapevines externally free from grapevine trunk disease symptoms. Australian Journal of Grape and Wine Research. 22:288-295.
The role of pest control advisors in managing grapevine trunk diseases: a survey of perceptions of practice efficacy and trends in recommendations - (Abstract Only)
Baumgartner, K., Doll, D., Hillis, V., Kaplan, J., Lubell, M. 2015. The role of pest control advisors in managing grapevine trunk diseases: a survey of perceptions of practice efficacy and trends in recommendations. American Phytopathological Society Abstracts. 119-O.
Wood-decay abilities of grapevine trunk pathogens Diaporthe ampelina, Diplodia seriata, Eutypa lata, and Neofusicoccum parvum - (Abstract Only)
Galarneau, E.R., Wallis, C.M., Morales-Cruz, A., Cantu, D., Baumgartner, K. 2015. Wood-decay abilities of grapevine trunk pathogens Diaporthe ampelina, Diplodia seriata, Eutypa lata, and Neofusicoccum parvum. American Phytopathological Society Abstracts. 50-P.
Interactive Effects of Water Stress and Neofusicoccum Parvum on Botryosphaeria Dieback of Grapevines - (Abstract Only)
Lawrence, D., Galarneau, E.R., Travadon, R., Baumgartner, K. 2015. Interactive effects of water stress and Neofusicoccum parvum on Botryosphaeria dieback of grapevines. American Phytopathological Society Abstracts. 576-P.
Influence of Pruning Systems on Trunk Pathogens and Other Fungi Colonizing Grapevine Wood - (Abstract Only)
Travadon, R., Lecomte, P., Diarra, P., Lawrence, D., Vallance, J., Ojeda, H., Rey, P., Baumgartner, K. 2015. Influence of pruning systems on trunk pathogens and other fungi colonizing grapevine wood. American Phytopathological Society Abstracts. 68-O.
Distinctive Expansion of Gene Families Associated with Virulence Functions in the Genomes of Grapevine Trunk Pathogens - (Abstract Only)
Morales-Cruz, A., Amrine, K.C., Blanco-Ulate, B., Lawrence, D.P., Travadon, R., Rolshausen, P.E., Baumgartner, K., Cantu, D. 2015. Distinctive Expansion of Gene Families Associated with Virulence Functions in the Genomes of Grapevine Trunk Pathogens. American Phytopathological Society Abstracts. 777-P.
Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens     Reprint Icon - (Peer Reviewed Journal)
Morales-Cruz, A., Amrine, K.C., Blanco-Ulate, B., Lawrence, D.P., Travadon, R., Rolshausen, P., Baumgartner, K., Cantu, D. 2015. Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens. Biomed Central (BMC) Genomics. 16:469.
Differential responses of grapevine rootstocks to water stress are associated with adjustments in fine root hydraulic physiology and suberization - (Peer Reviewed Journal)
Barrios-Masias, F.H., Knipfer, T., Mcelrone, A.J. 2015. Differential responses of grapevine rootstocks to water stress are associated with adjustments in fine root hydraulic physiology and suberization. Journal of Experimental Botany. doi: 10.1093/jxb/erv324.
Patterns of drought-induced embolism formation and spread in living walnut saplings visualized using x-ray microtomography - (Peer Reviewed Journal)
Knipfer, T., Brodersen, C., Zedan, A., Kluepfel, D.A., Mcelrone, A.J. 2015. Patterns of drought-induced embolism formation and spread in living walnut saplings visualized using x-ray microtomography. Tree Physiology. doi: 10.1093/treephys/tpv040.
A California Winery Wastewater Survey: Assessing the Salinity Challenge for Wastewater Reuse - (Peer Reviewed Journal)
Buelow, M.C., Steenwerth, K.L., Silva, L.C., Parikh, S.J. 2015. A California Winery Wastewater Survey: Assessing the Salinity Challenge for Wastewater Reuse. American Journal of Enology and Viticulture. doi: 10.5344/ajev.2015.14110.
Diversity of Diaporthe species associated with wood cankers of fruit and nut crops in northern California - (Peer Reviewed Journal)
Lawrence, D., Travadon, R., Baumgartner, K. 2015. Diversity of Diaporthe species associated with wood cankers of fruit and nut crops in northern California. Mycologia. 107(5):926-940. doi: 10.3852/14-353.
Characterization of winery wastewater for reuse in California     Reprint Icon - (Peer Reviewed Journal)
Buelow, M.C., Steenwerth, K.L., Silva, L.C., Parikh, S.J. 2015. Characterization of winery wastewater for reuse in California. American Journal of Enology and Viticulture. 66:302-310.
Making the economic case for early adoption of practices to prevent trunk diseases     Reprint Icon - (Trade Journal)
Baumgartner, K., Kaplan, J., Travadon, R. 2015. Making the economic case for early adoption of practices to prevent trunk diseases. The Lodi Winegrape Commission. Available: http://www.lodigrowers.com/making-a-case-for-early-adoption-of-practices-to-prevent-trunk-diseases/.
Genes expressed in grapevine leaves reveal latent wood infection by the fungal pathogen Neofusicoccum parvum - (Peer Reviewed Journal)
Czemmel, S., Galarneau, E.R., Travadon, R., Mcelrone, A.J., Cramer, G., Baumgartner, K. 2015. Genes expressed in grapevine leaves reveal latent wood infection by the fungal pathogen Neofusicoccum parvum. PLoS One. doi: 10.1371/journal.pone.0121828.
Grapevine species from varied native habitats exhibit differences in embolism formation/repair associated with leaf gas exchange and root pressure     Reprint Icon - (Peer Reviewed Journal)
Knipfer, T., Eustis, A.J., Brodersen, C., Walker, A., Mcelrone, A.J. 2015. Grapevine species from varied native habitats exhibit differences in embolism formation/repair associated with leaf gas exchange and root pressure. Plant Cell and Environment. 38:1503-1513.
The effect of mineral-ion interactions on soil hydraulic conductivity     Reprint Icon - (Peer Reviewed Journal)
Buelow, M.C., Steenwerth, K.L., Parikh, S.J. 2015. The effect of mineral-ion interactions on soil hydraulic conductivity. Agricultural Water Management. 152:277-285.
Plant-based markers of infection for Neofusicoccum parvum - (Abstract Only)
Baumgartner, K., Czemmel, S., Cramer, G.R., Galarneau, E.R., Travadon, R., Lawrence, D., Mcelrone, A.J., Cantu, D. 2014. Plant-based markers of infection for Neofusicoccum parvum. Workshop Proceedings. 9th International Workshop on Grapevine Trunk Diseases November 18-20, 2014, Adelaide, Australia.
An economic case for early adoption of preventative practices for management of grapevine trunk diseases - (Abstract Only)
Kaplan, J., Travadon, R., Cooper, M., Hillis, V., Lubell, M., Baumgartner, K. 2014. An economic case for early adoption of preventative practices for management of grapevine trunk diseases. Workshop Proceedings. 9th International Workshop on Grapevine Trunk Diseases, November 18-20,2014, Adelaide, Australia.
Synchrotron microtomography of xylem embolism in Sequoia sempervirens seedlings during cycles of drought and recovery     Reprint Icon - (Peer Reviewed Journal)
Choat, B., Brodersen, C., Mcelrone, A.J. 2015. Synchrotron microtomography of xylem embolism in Sequoia sempervirens seedlings during cycles of drought and recovery. New Phytologist. 205:1095-1105.
Cadophora species as trunk pathogens and wood-infecting fungi of grapevine in North America     Reprint Icon - (Peer Reviewed Journal)
Travadon, R., Lawrence, D., Rooney-Latham, S., Gubler, W., Rolshausen, P.E., Baumgartner, K. 2015. Cadophora species as trunk pathogens and wood-infecting fungi of grapevine in North America. Fungal Biology. 119:53-66.
Direct micro-CT observation confirms the induction of embolism upon xylem cutting under tension     Reprint Icon - (Peer Reviewed Journal)
Torres-Ruiz, J., Jansen, S., Choat, B., Mcelrone, A.J., Cochard, H., Brodribb, T.J., Badel, E., Burlett, R., Bouche, P.S., Brodersen, C.R., Li, S., Morris, H., Delzon, S. 2014. Direct micro-CT observation confirms the induction of embolism upon xylem cutting under tension. Plant Physiology. 167:40-43.
Double pruning to prevent trunk diseases in Washington vineyards     Reprint Icon - (Trade Journal)
Kaplan, J., Travadon, R., Baumgartner, K. 2014. Double pruning to prevent trunk diseases in Washington vineyards. Trade Journal Publication.
Guide to Vineyard Trunk Diseases in California - (Other)
(01-Aug-14)
Climate-smart agriculture global research agenda: science for action     Reprint Icon - (Peer Reviewed Journal)
Steenwerth, K.L., Hodson, A., Bloom, A., Carter, M., Cattaneo, A., Chartres, C., Hatfield, J.L., Henry, K., Horwath, W.R., Jenkins, B., Leemans, R., Lubell, M., Msangi, S., Prabhu, R., Reynolds, M., Sandoval Solis, S., Sischo, W., Springborn, M., Tittonell, P., Wollenberg, E., Hopmans, J., Kebreab, E., Lipper, L., Vermeulen, S., Wheeler, S., Jarvis, L., Jackson, L. 2014. Climate-smart agriculture global research agenda: science for action. Agriculture & Food Security. 3:11.
Trunk neglect is too common     Reprint Icon - (Trade Journal)
Baumgartner, K., Hillis, V., Lubell, M. 2014. Trunk neglect is too common. Trade Journal Publication.
Grower perceptions of preventative practices for management of trunk diseases of grape     Reprint Icon - (Abstract Only)
Baumgartner, K., Travadon, R., Hillis, A., Kaplan, J., Cooper, M., Lubell, M. 2014. Grower perceptions of preventative practices for management of trunk diseases of grape. American Phytopathological Society Annual Meeting. 100-0.
Research promises earlier warning for grapevine canker diseases     Reprint Icon - (Trade Journal)
Baumgartner, K., Northcutt, G. 2014. Research promises earlier warning for grapevine canker diseases. Trade Journal Publication.
Making the case for early adoption of preventative practices for management of grapevine trunk diseases     Reprint Icon - (Abstract Only)
Baumgartner, K., Travadon, R., Lubell, M., Hillis, A., Kaplan, J., Cooper, M. 2014. Making the case for early adoption of preventative practices for management of grapevine trunk diseases. American Society of Enology and Viticulture Annual Meeting Abstracts. pp. 80-81.
Pruning for prevention and management of canker diseases     Reprint Icon - (Trade Journal)
Baumgartner, K., Westover, F. 2014. Pruning for prevention and management of canker diseases. Trade Journal Publication.
Eutypa dieback in northern California vineyards     Reprint Icon - (Trade Journal)
Baumgartner, K., Travadon, R. 2013. Eutypa dieback in northern California vineyards. Lodi Grapewine Commission. Trade Journal Publication. Available: www.lodigrowers.com/eutypa-dieback-in-northern-california-vineyards-part-ii-of-ii/
Identification of Eutypa spp. causing Eutypa dieback of grapevine in Eastern North America     Reprint Icon - (Peer Reviewed Journal)
Rolshausen, P.E., Baumgartner, K., Travadon, R., Fujiyoshi, P.T., Pouzoulet, J., Wilcox, W.F. 2014. Identification of Eutypa spp. causing Eutypa dieback of grapevine in Eastern North America. Plant Disease. 98:483-491.
Guide to managing vineyard trunk diseases in Lodi     Reprint Icon - (Other)
Baumgartner, K., Travadon, R. 2013. Guide to managing vineyard trunk diseases in Lodi. Internet Web Page.
Armillaria root rot - (Book / Chapter)
Baumgartner, K., Rizzo, D.M. 2013. Armillaria root rot. In: Bettia, L., editor. Grape pest management. 3rd edition. Oakland, CA: University of California, Division of Agriculture and Natural Resources. p. 83-86.
Lab testing - (Book / Chapter)
Golino, D.A., Vasquez, S.J., Leavitt, G.M., Baumgartner, K. 2013. Lab testing. In: Bettiga, L., editor. Grape pest management. 3rd edition. Oakland, CA: University of California, Division of Agriculture and Natural Resources. p. 61-68.
Last Modified: 8/28/2016
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