Page Banner

United States Department of Agriculture

Agricultural Research Service

Research Project: Genomic Approaches and Genetic Resources for Improving Rice Yield and Grain Quality

Location: Dale Bumpers National Rice Research Center

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain - (Peer Reviewed Journal)
Huang, X., Deng, F., Pinson, S.R., Guerinot, M., Salt, D.E., Ma, J. 2016. A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain. Nature Communications. Nature Communications 7:121138. doi10.138/ncomms12138.
Transgressive variation for yield components measured throughout the growth cycle of Jefferson rice (Oryza sativa) x O. rufipogon introgression lines - (Peer Reviewed Journal)
Eizenga, G.C., Edwards, J., Yeater, K.M., Mccouch, S.R., Mcclung, A.M. 2016. Transgressive variation for yield components measured throughout the growth cycle of Jefferson rice (Oryza sativa) x O. rufipogon introgression lines. Crop Science. Crop Science 56:1-12. DOI: 10.2135/cropsci2015.10.0603.
Bran data of total flavonoid and total phenolic contents, oxygen radical absorbance capacity, and profiles of proanthocyanidins and whole grain physical traits of 32 red and purple rice varieties - (Peer Reviewed Journal)
Chen, M., McClung, A.M., Bergman, C.J. 2016. Bran data of total flavonoid and total phenolic contents, oxygen radical absorbance capacity, and profiles of proanthocyanidins and whole grain physical traits of 32 red and purple rice varieties. Data in Brief. 8:6-13.
Concentrations of oligomers and polymers of proanthocyanidins in red and purple rice bran and their relationships to total phenolics, flavonoids, antioxidant capacity and whole grain color - (Peer Reviewed Journal)
Chen, M., McClung, A.M., Bergman, C.J. 2016. Concentrations of oligomers and polymers of proanthocyanidins in red and purple rice bran and their relationships to total phenolics, flavonoids, antioxidant capacity and whole grain color. Food Chemistry. 208:279-287.
Small Differences in Water Level Impacted Straighthead Ratings - (Proceedings)
(25-Mar-16)
Fine Mapping and Introgressing a Fissure Resistance Locus - (Proceedings)
(25-Mar-16)
Differences in how rice plants processes arsenic in their cells - (Proceedings)
(25-Mar-16)
Identification of genes and physiological factors that reduce accumulation of arsenic in rice grain - (Proceedings)
(25-Mar-16)
Rice fissure resistance QTLs from ‘Saber’ complement those from ‘Cypress’ - (Proceedings)
(25-Mar-16)
Is there variation in resistant starch among high amylose rice varieties? - (Proceedings)
(25-Feb-16)
Progress in the paddy field - (Popular Publication)
McClung, A.M. 2016. Progress in the paddy field. International Innovation. Pg. 1-4.
Evidence for divergence of response in Indica, Japonica, and wild rice to high CO2 x temperature interaction - (Proceedings)
Wang, D.R., Bunce, J.A., Tomecek, M.B., Gealy, D.R., Mcclung, A.M., Mccouch, S.R., Ziska, L.H. 2016. Evidence for divergence of response in Indica, Japonica, and wild rice to high CO2 x temperature interaction. Rice Technical Working Group Meeting Proceedings. Global Change Biology 22, 2620-2632.
Open Access Resources for Genome Wide Association Studies (GWAS) in rice (Oryza sativa) illustrate the power of population-specific mapping - (Peer Reviewed Journal)
McCouch, S.R., Wright, M.H., Tung, C., Maron, L.G., McNally, K., Fitzgerald, M., Singh, N., DeClerck, G.A., Agosoto Perez, F., Korniliev, P., Greenberg, A., Naredo, M.B., Mercado, S.M., Harrington, S.E., Shi, Y., Branchini, D.A., Kuser-Falcao, P.R., Leung, H., Ebana, K., Yano, M., Eizenga, G.C., McClung, A.M., Mezey, J. 2016. Open Access Resources for Genome Wide Association Studies (GWAS) in rice (Oryza sativa) illustrate the power of population-specific mapping. Nature Communications. 7:10532. doi: 10.1038/ncomms10532.
Evaluation of a M-202x Oryza nivara advanced backcross population for seedling vigor, agronomic traits, yield components, yield and grain quality - (Peer Reviewed Journal)
Eizenga, G.C., Neves, P.C., Bryant, R.J., Agrama, H.A., Mackill, D.J. 2015. Evaluation of a M-202x Oryza nivara advanced backcross population for seedling vigor, agronomic traits, yield components, yield and grain quality. Euphytica. 208:157–171. doi: 10.1007/s10681-015-1613-y.
Transgressive variation for yield components and dynamic traits in Jefferson (Oryza sativa) x O. rufipogon introgression lines - (Abstract Only)
Edwards, J., Eizenga, G.C., Yeater, K.M., McCouch, S.R., McClung, A.M. 2016. Transgressive variation for yield components and dynamic traits in Jefferson (Oryza sativa) x O. rufipogon introgression lines. Plant and Animal Genome Conference Proceedings. W012.
Vitamin E homologs and ¿-oryzanol levels in rice (Oryza sativa L.) during seed development - (Peer Reviewed Journal)
Chen, M., Bergman, C.J. 2016. Vitamin E homologs and y-oryzanol levels in rice (Oryza sativa L.) during seed development. Cereal Chemistry. 93:182-188.
Unlocking the variation hidden in rice germplasm collections with genomics - (Abstract Only)
Eizenga, G.C., Shakiba, E., Edwards, J., Baldo, A.M., Korniliev, P., Mccouch, S.R. 2015. Unlocking the variation hidden in rice germplasm collections with genomics. Agronomy Society of America, Crop Science Society of America, Soil Science Society of America Meeting. . In: Abstracts, Annual Meeting, ASA-CSSA-SSSA, Minneapolis, MN 15-18 November 2015. Available at: https://scisoc.confex.com/scisoc/2015am/webprogram/Paper92079.html Paper 92079.
Genetic architecture of grain chalk in rice and interactions with a low phytic acid locus - (Abstract Only)
Mcclung, A.M., Jackson, A.K., Bryant, R.J., Edwards, J. 2015. Genetic architecture of grain chalk in rice and interactions with a low phytic acid locus. Agronomy Abstracts, paper number 94185, Minneapolis, MN, Nov. 15-18, 2015. https://scisoc.confex.com/scisoc/2015am/webprogram/Paper94185.html. ASA-CSSA-SSSA Annual Meeting Abstracts. Poster Number 1035.
Greenhouse validation of yield component transgressive variation effects of wild Oryza species introgressions in an elite US rice cultivar - (Abstract Only)
Mcclung, A.M., Eizenga, G.C., Mccouch, S.M., Edwards, J. 2015. Greenhouse validation of yield component transgressive variation effects of wild Oryza species introgressions in an elite US rice cultivar. Agronomy Abstracts, paper number 94223, Minneapolis, MN, Nov. 15-18, 2015. https://scisoc.confex.com/scisoc/2015am/webprogram/Paper94223.html. ASA-CSSA-SSSA Annual Meeting Abstracts. Poster Number 1037.
Rice breeding trends over 30 years for predicting response to climate change - (Abstract Only)
Mcclung, A.M., Wang, D.R., Woodard, J.D., Mccouch, S.M., Edwards, J. 2015. Rice breeding trends over 30 years for predicting response to climate change. Agronomy Abstracts, paper number 95665, Minneapolis, MN, Nov. 15-18, 2015. https://scisoc.confex.com/scisoc/2015am/webprogram/Paper95665.html. ASA-CSSA-SSSA Annual Meeting Abstracts. Poster Number 601.
Rice varietal differences in arsenite metabolism - (Abstract Only)
Heuschele, D.J., Pinson, S.R., Smith, A.P. 2015. Rice varietal differences in arsenite metabolism. ASA-CSSA-SSSA Annual Meeting Abstracts. Minneapolis, MN, Nov. 15-18, 2015. Poster number: 1108. Paper number: 93248. https://scisoc.confex.com/scisoc/2015am/webprogram/Paper93248.html.
Accumulation of arsenic in leaves and grain are affected by variety and soil arsenic - (Abstract Only)
Pinson, S.R., Heuschele, D.J., Smith, A.P. 2015. Accumulation of arsenic in leaves and grain are affected by variety and soil arsenic. ASA-CSSA-SSSA Annual Meeting Abstracts. Minneapolis, MN, Nov. 15-18, 2015. Paper number 937367.
Preserving rice quality: fine mapping and introgressing a fissure resistance locus - (Abstract Only)
Sater, H.M., Moldenhauer, K.K., Mason, R.E., Pinson, S.R., Siebenmorgen, T., Boyett, V.A. 2015. Preserving rice quality: fine mapping and introgressing a fissure resistance locus. ASA-CSSA-SSSA Annual Meeting Abstracts. Minneapolis, MN, Nov. 15-18, 2015. Paper number 94498.
Effect of nitrogen rate and the environment on physicochemical properties of selected high amylose rice cultivars - (Peer Reviewed Journal)
Bryant, R.J., Yeater, K.M., Mcclung, A.M. 2015. Effect of nitrogen rate and the environment on physicochemical properties of selected high amylose rice cultivars. Cereal Chemistry. 92(6):604-610. doi.org/10.1094/CCHEM-02-15-0035-R.
In vitro fermentation patterns of rice bran components by human gut microbiota - (Abstract Only)
(18-Jun-15)
Rice tissue accumulation of particular elements is dependent on the plant’s physiology - (Experiment Station)
Tarpley, L., Chittoori, R., Pinson, S.R., Salt, D.E. 2015. Rice tissue accumulation of particular elements is dependent on the plant’s physiology. Texas Rice, Highlights in Research Special Edition 2015 [Meeting Abstract]. p. 8-9. Availiable: http://beaumont.tamu.edu/eLibrary/Newsletter/2015_Highlights_in_Research.pdf
Reducing arsenic accumulation in rice grain through iron oxide amendment - (Peer Reviewed Journal)
Farrow, E.M., Wang, J., Burken, J.G., Shi, H., Yan, W., Yang, J., Hua, B., Deng, B. 2015. Reducing arsenic accumulation in rice grain through iron oxide amendment. Ecotoxicology and Environmental Safety. 118:55-61. doi: 10.1016/j.ecoenv.2015.04.014.
Effects of cultivars, organic cropping management and environment on antioxidants in whole grain rice     Reprint Icon - (Peer Reviewed Journal)
Chen, M., Mcclung, A.M. 2015. Effects of cultivars, organic cropping management and environment on antioxidants in whole grain rice. Cereal Chemistry. 92(4):364-369. DOI.org/10.1094/CCHEM-11-14-0240-R.
New market opportunities for rice grains - (Abstract Only)
(19-Feb-15)
Registration of 24 ‘IR36’ rice trisomic lines - (Peer Reviewed Journal)
Eizenga, G.C., Khush, G.S. 2015. Registration of 24 ‘IR36’ rice trisomic lines. Journal of Plant Registrations. 9:398–402. doi:10.3198/jpr2014.11.0079crgs.
Construction of six Oryza sativa x O. rufipogon Chromosome Segment Substitution Line (CSSL) Libraries - (Abstract Only)
Shakiba E., Eizenga G.C., Singh N., Ali M.L., Kim H.J., Wright M., Ahn S.N., McCouch S. 2014. Construction of six Oryza sativa x O. rufipogon chromosome segment substitution line (CSSL) libraries. International Plant & Animal Genome XXIII. San Diego, CA. 10-14 Jan. 2015. Available at: https://pag.confex.com/pag/xxiii/webprogram/Paper15195.html.
Rice Genotype Variation in Leaf-Grain Element Concentration Associations     Reprint Icon - (Abstract Only)
Tarpley L., R. Chittoori, S.R.M. Pinson, M.L. Guerinot, and D.E. Salt. 2014. Rice genotype variation in leaf-grain element concentration associations. Agronomy Abstracts, paper number 88078, Long Beach, CA, Nov. 2-6, 2014. https://scisoc.confex.com/scisoc/2014am/webprogram/Paper88078.html. (oral presentation)
Identification of major genes affecting nutritional element concentrations in rice grains     Reprint Icon - (Abstract Only)
Pinson, S.R.M., L. Tarpley, D.J. Heuschele, M.L. Guerinot, and D.E Salt. 2014. Identification of major genes affecting nutritional element concentrations in rice grains. Agronomy Abstracts, paper number 87946, Long Beach, CA, Nov. 2-6, 2014. https://scisoc.confex.com/scisoc/2014am/webprogram/Paper87946.html (oral presentation)
Health-promoting phytochemicals in rice: genotype screening for biofortification breeding - (Abstract Only)
Chen, M., Bergman, C.J., Fjellstrom, R.G., Pinson, S.R., Mcclung, A.M. 2014. Health-promoting phytochemicals in rice: genotype screening for biofortification breeding. Proc. ASA-CSSA-SSSA Annual Meeting Abstracts, San Diego, CA, Nov 2-5, 2104. p. x.
Developing and delivering biofortified Rice to the consumer - (Abstract Only)
Mcclung, A.M., Chen, M. 2014. Developing and delivering biofortified rice to the consumer. ASA-CSSA-SSSA Annual Meeting Abstracts, November 2-5, 2014, Long Beach, CA.
Six rice chromosome segment substitution lines libraries with O. rufipogon introgressions - (Abstract Only)
Eizenga G.C., Singh N., Shakiba E., Ali M.L., Kim H.J., Wright M.H., Ahn S.N. McCouch S.R. 2014. Six rice chromosome segment substitution line libraries with O. rufipogon introgressions. In: Abstracts, Annual Meeting, ASA-CSSA-SSSA, Long Beach, CA 2–5 Nov. 2014. Available at: https://scisoc.confex.com/scisoc/2014am/webprogram/Paper86425.html. [CDROM].
Rice lines with high leaf mineral nutrient levels - (Experiment Station)
Tarpley, L., Chittoori, R., Pinson, S.R., Salt, D.E. 2014. Rice lines with high leaf mineral nutrient levels. Texas Experiment Station Field Day Handout. Texas Rice, Highlights in Research Special Edition:pg.9-10. http://beaumont.tamu.edu/eLibrary/Newsletter/2014_Highlights_in_Research.pdf
Rice lines with high leaf mineral nutrient levels - (Experiment Station)
Tarpley, L., Chittoori, R., Pinson, S.R., Salt, D.E. 2014. Rice lines with high leaf mineral nutrient levels. Texas Experiment Station Field Day Handout. Texas Rice, Highlights in Research Special Edition:pg.9-10. http://beaumont.tamu.edu/eLibrary/Newsletter/2014_Highlights_in_Research.pdf
Isolation of functional components from red rice bran for evaluating their colon-specific health benefits - (Abstract Only)
(10-Apr-14)
Unraveling the secrets of rice wild species - (Book / Chapter)
Shakiba, E., Eizenga, G.C. 2014. Unraveling the secrets of rice wild species. In: Yan, W., Bao, J., editors. Rice - Germplasm, Genetics and Improvement. InTech. DOI. 10.5772/58393.
Effects of hydrothermal processes on antioxidants in brown, purple and red bran whole grain rice (Oryza sativa L.) - (Peer Reviewed Journal)
Min, B., McClung, A.M., Chen, M. 2014. Effects of hydrothermal processes on antioxidants in brown, purple and red bran whole grain rice (Oryza sativa L.). Food Chemistry. 159:106-115.
Identification of genetic loci underlying the kernel fissure-resistance exhibited by 'cypress' and 'saber' - (Proceedings)
1. Pinson, S.R.M., J. Gibbons, and Y. Jia. 2014. Identification of genetic loci underlying the kernel fissure-resistance exhibited by 'Cypress' and 'Saber'. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, pp. 58-59. Feb. 18-21, 2014. CDROM.
Identification of QTLs that enhance the nutritional value of rice grain and limit accumulation of undesirable elements such as arsenic - (Proceedings)
2. Pinson, S.R.M., L.Tarpley, W. Yan, G. Norton, M. Zhang, M.L. Guerinot, and D.E. Salt. 2014. Identification of QTLs that enhance the nutritional value of rice grain and limit accumulation of undesirable elements such as arsenic. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, pp. 57-58. Feb. 18-21, 2014. CDROM.
Rice grain element concentration predictions based on leaf concentrations: accelerating improvement of nutritional quality - (Proceedings)
3. Tarpley, L., R. Chittoori, S.R.M. Pinson, D.E. Salt, M.L. Guerinot, B. Lahner, M. Zhang, and J.T. Cothren. 2014. Rice grain element concentration predictions based on leaf concentrations: accelerating improvement of nutritional quality. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p. 51. Feb. 18-21, 2014. CDROM.
Early screening of recombinant inbred lines for fissure resistance in non-semidwarf rice - (Proceedings)
4. Sater, H.M., Moldenhauer, K.A., Pinson, S.R.M., and Boyett, V.A. 2014. Early Screening of Recombinant Inbred Lines for Fissure Resistance in Non-Semidwarf Rice. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p. 61. Feb. 18-21, 2014. CDROM.
Characterization of an RNase Z nonsense mutation identified exclusively in environment-conditioned genic male sterile rice - (Peer Reviewed Journal)
Zhang, H.L., Huang, J.Z., Liu, Q.L., Nawaz, Z., Lu, H.P., Gong, J.Y., Zhu, Y.J., Yan, W., Shu, Q.Y. 2014. Characterization of an RNase Z nonsense mutation identified exclusively in environment-conditioned genic male sterile rice. Molecular Breeding. 34:481-489. doi: 10.1007/s11032-014-0051-1.
Effects of high night temperature and abscisic acid (ABA) on rice (Oryza sativa L.) physiology - (Proceedings)
Mohammed, A.R., Chen, M.-H., Tarpley, L. 2014. Effects of high night temperature and abscisic acid (ABA) on rice (Oryza sativa L.) physiology. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, pp. 113. Feb. 18-21, 2014. CDROM.
Development of Japonica mapping populations to validate GWAS in the rice diversity panel 1 - (Proceedings)
Hancock T.A., Ali M.L., McCouch, S.R., Eizenga, G.C. 2014. Development of Japonica mapping populations to validate GWAS in the rice diversity panel 1. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, pp. 64-65. Feb. 18-21, 2014. CDROM.
Use of the Rice Diversity Panel 1 to map traits important for rice improvement - (Proceedings)
Eizenga, G.C., McClung, A.M., Wright, M.H., Greenberg, A.J., Singh, N., Agosto-Perez, F.J., DeClerck, G.A., Mezey, J.G., and McCouch, S.R. 2014. Use of the Rice Diversity Panel 1 to map traits important for rice improvement. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, pp. 56-57. Feb. 18-21, 2014. CDROM.
Effect of enzyme activity on the starch structure and processing quality of selected rice varieties - (Abstract Only)
Bryant, R., Yeater, K., Wang, Y.-J., Counce, P., and McClung, A. 2014. Effect of Enzyme Activity on the Starch Structure and Processing Quality of Selected Rice Varieties. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p. 162. Feb. 18-21, 2014. CDROM.
US cultivar grain quality as assessed using objective and subjective methods - (Proceedings)
McClung, A.M., Yeater, K., Jodari, F, Linscombe, S., Walker, T., Ottis, B., Wilson, L.T., and Moldenhauer, K. 2014. U.S. Cultivar Grain Quality as Assessed Using Objective and Subjective Methods. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p. 165. Feb. 18-21, 2014. CDROM.
Generalizations on the use of leaf element concentrations to accelerate improvement of rice grain nutritional quality - (Abstract Only)
Tarpley, L., Chittoori, R., Pinson, S.R., Salt, D.E., Guerinot, M.L., Cothren, T. 2013. Generalizations on the use of leaf element concentrations to accelerate improvement of rice grain nutritional quality. ASA-CSSA-SSSA Annual Meeting Abstracts. Paper number 78835, Tampa, FL, Nov. 2-6, 2013.
Genetic and field management strategies to enhance the nutritional value of rice grains and limit accumulation of undesirable elements such as arsenic - (Abstract Only)
Pinson, S.R., Tarpley, L., Chittoori, R., Yan, W., Guerinot, M.L., Salt, D.E. 2013. Genetic and field management strategies to enhance the nutritional value of rice grains and limit accumulation of undesirable elements such as arsenic. ASA-CSSA-SSSA Annual Meeting Abstracts. Paper number 78886, Tampa FL, Nov. 2-6, 2013.
Optimal fertilizer N rates and yield-scaled global warming potential in drill seeded rice - (Peer Reviewed Journal)
Adviento-Borbe, M.A., Pittelkow, C.M., Anders, M., Van Kessel, C., Hill, J.E., McClung, A.M., Six, J., Linquist, B.A. 2013. Optimal fertilizer N rates and yield-scaled global warming potential in drill seeded rice. Journal of Environmental Quality. 42(6):1623-1634.
Starch physicochemical properties of rice accessions and their association with molecular markers     Reprint Icon - (Peer Reviewed Journal)
Asante, M.D., Offei, S.K., Gracen, V., Adu-Dapaah, H., Danquah, E.Y., McClung, A.M., Bryant, R.J. 2013. Starch physicochemical properties of rice accessions and their association with molecular markers. Starch/Starke. 65:1-7.
Genetic and field management strategies to for limiting accumulation of arsenic in rice grains - (Abstract Only)
Pinson, S.R., Tarpley, L., Yan, W., Salt, D.E. 2013. Genetic and field management strategies to for limiting accumulation of arsenic in rice grains [abstract]. American Chemical Society Abstracts, April 7-11, 2013, New Orleans, Louisiana. p.324.
Found: genes controlling the nutrient content of the rice grain     Reprint Icon - (Abstract Only)
Pinson, S.R., Tarpley, L., Yeater, K.M., Yan, W., Guerinot, M., Salt, D.E. 2012. Found: genes controlling the nutrient content of the rice grain. ASA-CSSA-SSSA Annual Meeting Abstracts. Agronomy Abstracts Oct. 21-24, 2012 Cincinnati, OH. Paper number: 376-2.
Rice root physiological and morphological traits of diverse genotypes grown in different media     Reprint Icon - (Abstract Only)
Chittoori, R., Pinson, S.R., Tarpley, L. 2012. Rice root physiological and morphological traits of diverse genotypes grown in different media. ASA-CSSA-SSSA Annual Meeting Abstracts. Agronomy Abstracts. Cincinatti, OH. Oct. 21-24, 2012 Paper number: 97-8.
Root physiological and morphological characteristics of 24 rice varieties selected for diverse grain mineral     Reprint Icon - (Abstract Only)
Chittoori, R., Pinson, S.R., Tarpley, L. 2012. Root physiological and morphological characteristics of 24 rice varieties selected for diverse grain mineral. ASA-CSSA-SSSA Annual Meeting Abstracts. Agronomy Abstracts. Cincinnati, OH. Oct. 21 – 24, 2012 Poster number: 808.
Rice bran phytochemicals and dietary colon chemoprevention teamwork - (Proceedings)
Borreson, E., Forster, G., Kumar, A., Keller, A., Chen, M., Mcclung, A.M., Weir, T.L., Wdowik, M., Ryan, E. 2012. Rice bran phytochemicals and dietary colon chemoprevention teamwork. Rice Technical Working Group Meeting Proceedings. Hot Springs, AR Feb. 27 - Mar. 1, 2012. pg. 160-161.
Genotype and environment effects on Tocopherol, Tocotrienol, and y-Oryzanol contents of southern US rice - (Peer Reviewed Journal)
Bergman, C.J., Xu, Z. 2003. Genotype and environment effects on Tocopherol, Tocotrienol,andy-Oryzanol contents of southern US rice. Cereal Chemistry. 80(4):446-449.
Last Modified: 7/28/2016
Footer Content Back to Top of Page