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United States Department of Agriculture

Agricultural Research Service

Research Project: Genetic Enhancement of Allium, Cucumis, and Daucus Germplasm

Location: Vegetable Crops Research Unit

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Patterns of gene flow between crop and wild carrot, Daucus carota (Apiaceae) in the United States - (Peer Reviewed Journal)
(18-Jul-16)
The chlorophyll-deficient golden leaf mutation in cucumber is due to a single nucleotide substitution in CsChlI for magnesium chelatase I subunit - (Peer Reviewed Journal)
Gao, M., Hu, L., Li, Y., Weng, Y. 2016. The chlorophyll-deficient golden leaf mutation in cucumber is due to a single nucleotide substitution in CsChlI for magnesium chelatase I subunit. Theoretical and Applied Genetics. doi: 10.1007/s00122-016-2752-9.
Pentatricopeptide repeat 336 as the candidate gene for paternal sorting of mitochondria (Psm) in cucumber - (Peer Reviewed Journal)
Del Valle-Echevarria, A.R., Sanseverino, W., Garcia-Mas, J., Havey, M.J. 2016. Pentatricopeptide repeat 336 as the candidate gene for paternal sorting of mitochondria (Psm) in cucumber. Theoretical and Applied Genetics. doi: 10.1007/s00122-016-2751-x.
Organellar genomes of the cucurbits - (Book / Chapter)
(23-Jun-16)
Nuclear DNA content variation within the genus Daucus (Apiaceae) determined by flow cytometry     Reprint Icon - (Peer Reviewed Journal)
Nowicka, A., Sliwinska, E., Grzebelus, D., Baranski, R., Simon, P.W., Nothnagel, T., Grzebelus, E. 2016. Nuclear DNA content variation within the genus Daucus (Apiaceae) determined by flow cytometry. Scientific Horticulture. 209:132-138. doi: 10.1016/j.scienta.2016.06.023.
Asynchronous meiosis in Cucumis hystrix-cucumber synthetic tetraploids resulting in low male fertility - (Peer Reviewed Journal)
Han, Y., Pan, J., Thammapichai, P., Li, Z., Weng, Y. 2016. Asynchronous meiosis in Cucumis hystrix-cucumber synthetic tetraploids resulting in low male fertility. The Crop Journal. doi: 10.1016/j.cj.2016.05.003.
QTL mapping for downy mildew resistance in cucumber inbred line WI7120 (PI 330628) - (Peer Reviewed Journal)
Wang, Y., VandenLangenberg, K., Wehner, T.C., Kraan, P.A.G., Suelmanm, J., Zheng, X., Owens, K., Weng, Y. 2016. QTL mapping for downy mildew resistance in cucumber inbred line WI7120 (PI 330628). Theoretical and Applied Genetics. doi: 10.1007/s00122-016-2719-x.
A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution     Reprint Icon - (Peer Reviewed Journal)
Iorizzo, M., Ellison, S., Senalik, D., Zeng, P., Satapoomin, P., Huang, J., Bowman, M., Iovene, M., Sanseverino, W., Cavagnaro, P., Yildiz, M., Spooner, D.M., Simon, P.W., et al. 2016. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution. Nature Genetics. 48(6):657-666. doi: 10.1038/ng.3565.
Identification and characterisation of Dof transcription factors in the cucumber genome     Reprint Icon - (Peer Reviewed Journal)
Wen, C., Cheng, Q., Zhao, L., Mao, A., Yang, J., Yu, S., Weng, Y., Xu, Y. 2016. Identification and characterisation of Dof transcription factors in the cucumber genome. Scientific Reports. 6:23072. doi: 10.1038/srep23072.
Significant parent-of-origin effects in cucumber - (Proceedings)
Shen, J., Dirks, R., Havey, M.J. 2016. Significant parent-of-origin effects in cucumber. Eucarpia Cucurbitaceae Symposium Proceedings. Paper No. L8.
Factors contributing to bacterial bulb rots of onion - (Trade Journal)
Havey, M.J. 2016. Factors contributing to bacterial bulb rots of onion. Onion World. 32(2):17.
A truncated F-box protein confers the dwarfism in cucumber     Reprint Icon - (Peer Reviewed Journal)
Lin, T., Wang, S., Zhong, Y., Gao, D., Cui, Q., Chen, H., Zhang, Z., Shen, H., Weng, Y., Huang, S. 2016. A truncated F-box protein confers the dwarfism in cucumber. Journal of Genetics and Genomics. 43(4):223-226. doi: 10.1016/j.jgg.2016.01.007.
Integrated analysis in bi-parental and natural populations reveals CsCLAVATA3 (CsCLV3) underlying carpel number variations in cucumber     Reprint Icon - (Peer Reviewed Journal)
Li, S., Pan, Y., Wen, C., Li, Y., Liu, X., Zhang, X., Behera, T.K., Xing, G., Weng, Y. 2016. Integrated analysis in bi-parental and natural populations reveals CsCLAVATA3 (CsCLV3) underlying carpel number variations in cucumber. Theoretical and Applied Genetics. 129(5):1007-1022. doi: 10.1007/s00122-016-2679-1.
The loss-of-function GLABROUS 3 mutation in cucumber is due to LTR-retrotransposon insertion in a class IV HD-ZIP transcription factor gene CsGL3 that is epistatic over CsGL1     Reprint Icon - (Peer Reviewed Journal)
Pan, Y., Bo, K., Cheng, Z., Weng, Y. 2015. The loss-of-function GLABROUS 3 mutation in cucumber is due to LTR-retrotransposon insertion in a class IV HD-ZIP transcription factor gene CsGL3 that is epistatic over CsGL1. Biomed Central (BMC) Plant Biology. 15(1):302. doi: 10.1186/s12870-015-0693-0.
High-resolution tyramide-FISH mapping of markers tightly linked to the male-fertility restoration (Ms) locus of onion     Reprint Icon - (Peer Reviewed Journal)
Khrustaleva, L., Jiang, J., Havey, M.J. 2015. High-resolution tyramide-FISH mapping of markers tightly linked to the male-fertility restoration (Ms) locus of onion. Theoretical and Applied Genetics. 129(3):535-545. doi: 10.1007/s00122-015-2646-2.
Fine mapping of a dominantly inherited powdery mildew resistance major-effect QTL, Pm1.1, in cucumber identifies a 41.1 kb region containing two tandemly arrayed cysteine-rich receptor-like protein kinase genes     Reprint Icon - (Peer Reviewed Journal)
Xu, X., Yu, T., Xu, R., Shi, Y., Lin, X., Xu, Q., Qi, X., Weng, Y., Chen, X. 2015. Fine mapping of a dominantly inherited powdery mildew resistance major-effect QTL, Pm1.1, in cucumber identifies a 41.1 kb region containing two tandemly arrayed cysteine-rich receptor-like protein kinase genes. Theoretical and Applied Genetics. 129(3):507-516. doi: 10.1007/s00122-015-2644-4.
Transcriptomic and QTL analysis suggest candidate fruit shape factors in cucumber (Cucumis sativus) - (Abstract Only)
Colle, M., Weng, Y., Ophir, R., Sherman, A., Kang, Y., Grumet, R. 2016. Transcriptomic and QTL analysis suggest candidate fruit shape factors in cucumber (Cucumis sativus) [abstract]. Plant and Animal Genome. Paper No. P0073.
QTL mapping of downy mildew resistance in PI 197088 and PI 330628 cucumbers - (Abstract Only)
Wang, Y.H., Vanden Langenberg, K., Wehner, T.C., Kraan, P., Suelmann, J., Zheng, X.Y., Owens, K., Weng, Y. 2016. QTL mapping of downy mildew resistance in PI 197088 and PI 330628 cucumbers [abstract]. Plant and Animal Genome. Paper No. P1161.
De novo assembly of a draft genome for Cucumis hystrix, the closest relative of cucumber - (Abstract Only)
Thammapickai, P., Weng, Y. 2016. De novo assembly of a draft genome for Cucumis hystrix, the closest relative of cucumber [abstract]. Plant and Animal Genome. Paper No. 1162.
Single nucleotide polymorphisms and indel markers from the transcriptome of garlic     Reprint Icon - (Peer Reviewed Journal)
Havey, M.J., Ahn, Y. 2016. Single nucleotide polymorphisms and indel markers from the transcriptome of garlic. Journal of the American Society for Horticultural Science. 141(1):62-65.
QTL mapping for downy mildew resistance in WI7120B (PI 330628) cucumber - (Proceedings)
Wang, Y.H., Vanden Langenberg, K., Wehner, T.C., Kraan, P., Suelmann, J., Zheng, X.Y., Owens, K., Weng, Y. 2015. QTL mapping for downy mildew resistance in WI7120B (PI 330628) cucumber [abstract]. Pickle Packers International Meeting Proceedings.
Persistence and protection of mitochondrial DNA in the generative cell of cucumber is consistent with its paternal transmission     Reprint Icon - (Peer Reviewed Journal)
Shen, J., Zhao, J., Bartoszewski, G., Malepszy, S., Havey, M., Chen, J. 2015. Persistence and protection of mitochondrial DNA in the generative cell of cucumber is consistent with its paternal transmission. Plant And Cell Physiology. 56(11):2271-2282. doi: 10.1093/pcp/pcv140.
A novel allele of monoecious (m) locus is responsible for elongated fruit shape and perfect flowers in cucumber (Cucumis sativus L.)     Reprint Icon - (Peer Reviewed Journal)
Tan, J., Tao, Q., Niu, H., Zhang, Z., Li, D., Gong, Z., Weng, Y., Li, Z. 2015. A novel allele of monoecious (m) locus is responsible for elongated fruit shape and perfect flowers in cucumber (Cucumis sativus L.). Theoretical and Applied Genetics. 128(12):2483-2493. doi: 10.1007/s00122-015-2603-0.
Fine genetic mapping of target leaf spot resistance gene cca-3 in cucumber, Cucumis sativus L.     Reprint Icon - (Peer Reviewed Journal)
Wen, C., Mao, A., Dong, C., Liu, H., Yu, S., Guo, Y.D., Weng, Y., Xu, Y. 2015. Fine genetic mapping of target leaf spot resistance gene cca-3 in cucumber, Cucumis sativus L.. Theoretical and Applied Genetics. 128(12):2495-2506. doi: 10.1007/s00122-015-2604-z.
Variation for epicuticular waxes and thrips resistance in onion - (Abstract Only)
Damon, S., Groves, R., Havey, M.J. 2015. Variation for epicuticular waxes and thrips resistance in onion [abstract]. Plant Breeding Conference Proceedings. p. 26.
Recent advance in carrot genomics - (Peer Reviewed Journal)
(25-Jul-15)
The CIOA (Carrot Improvement for Organic Agriculture) Project: Location, cropping system, and genetic background influence carrot performance including top height and flavor - (Peer Reviewed Journal)
(23-Jul-15)
The next generation of carotenoid studies in carrot (Daucus carota L.) - (Peer Reviewed Journal)
(17-Jul-15)
Genetic diversity, population structure, and formulation of a core collection of 1,197 Citrullus accessions     Reprint Icon - (Peer Reviewed Journal)
Zhang, H., Fan, J., Guo, S., Ren, Y., Gong, G., Zhang, J., Weng, Y., Davis, A., Xu, Y. 2016. Genetic diversity, population structure, and formulation of a core collection of 1,197 Citrullus accessions. HortScience. 51(1):23-29.
Cucumber as a model plant to study mitochondrial-nuclear interactions - (Abstract Only)
Del Valle-Echevarria, A.R., Sanseverino, W., Garcia-Mas, J., Havey, M.J. 2015. Cucumber as a model plant to study mitochondrial-nuclear interactions [abstract]. Slovenian Genetics Society Meeting. p. 2.
Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects     Reprint Icon - (Peer Reviewed Journal)
Kole, C., Muthamilarasan, M., Henry, R., Edwards, D., Sharma, R., Abberton, M., Batley, J., Bentley, A., Blakeney, M., Bryant, J., Simon, P.W., et al. 2015. Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects. Frontiers in Plant Science. 6:563. doi: 10.3389/fpls.2015.00563.
Tyramide-FISH mapping of single genes for development of an integrated recombination and cytogenetic map of chromosome 5 of Allium cepa     Reprint Icon - (Peer Reviewed Journal)
Romanov, D., Divashuk, M., Havey, M.J., Khrustaleva, L. 2015. Tyramide-FISH mapping of single genes for development of an integrated recombination and cytogenetic map of chromosome 5 of Allium cepa. Genome. 58(3):111-119. doi: 10.1139/gen-2015-0019.
QTL mapping in multiple populations and development stages reveals dynamic quantitative trait loci for fruit size in cucumbers of different market classes     Reprint Icon - (Peer Reviewed Journal)
Weng, Y., Colle, M., Wang, Y., Yang, L., Rubinstein, M., Sherman, A., Ophir, R., Grumet, R. 2015. QTL mapping in multiple populations and development stages reveals dynamic quantitative trait loci for fruit size in cucumbers of different market classes. Theoretical and Applied Genetics. 128(9):1747-1763.
Lessons from 25 years of genetic mapping in onion: where next? - (Proceedings)
Havey, M.J. 2015. Lessons from 25 years of genetic mapping in onion: where next?. International Symposium on the Edible Alliaceae. Paper No. IL150127003.
Chromosome-specific painting in Cucumis species using bulked oligonucleotides     Reprint Icon - (Peer Reviewed Journal)
Han, Y., Zhang, T., Thammapichai, P., Weng, Y., Jiang, J. 2015. Chromosome-specific painting in Cucumis species using bulked oligonucleotides. Genetics. 200(3):771-779.
Identification and characterization of terpene synthases potentially involved in the formation of volatile terpenes in carrot (Daucus carota L.) roots     Reprint Icon - (Peer Reviewed Journal)
Yahyaa, M., Tholl, D., Cormier, G., Jensen, R., Simon, P.W., Ibdah, M. 2015. Identification and characterization of terpene synthases potentially involved in the formation of volatile terpenes in carrot (Daucus carota L.) roots. Journal of Agricultural and Food Chemistry. 63(19):4870-4878. doi: 10.1021/acs.jafc.5b00546.
The mosaic mutants of cucumber: A method to produce knock-downs of mitochondrial transcripts     Reprint Icon - (Peer Reviewed Journal)
Del Valle-Echevarria, A.R., Kielkowska, A., Bartoszewski, G., Havey, M.J. 2015. The mosaic mutants of cucumber: a method to produce knock-downs of mitochondrial transcripts. G3, Genes/Genomes/Genetics. 5(6):1211-1221.
Cucumber applied genomics: where we are five years after release of cucumber draft genome - (Abstract Only)
Weng, Y. 2015. Cucumber applied genomics: where we are five years after release of cucumber draft genome [abstract]. International Symposium on Cucurbits Proceedings. Paper No. S3.
Cucumber possesses a single terminal alternative oxidase gene that is upregulated by cold stress and in the mosaic (MSC) mitochondrial mutants     Reprint Icon - (Peer Reviewed Journal)
Mroz, T.L., Havey, M.J., Bartoszewski, G. 2015. Cucumber possesses a single terminal alternative oxidase gene that is upregulated by cold stress and in the mosaic (MSC) mitochondrial mutants. Plant Molecular Biology Reporter. 33(6):1893-1906. doi:10.1007/s11105-015-0883-9.
A sequencing-based linkage map of cucumber     Reprint Icon - (Peer Reviewed Journal)
Zhou, Q., Miao, H., Li, S., Zhang, S., Wang, Y., Weng, Y., Zhang, Z., Huang, S., Gu, X. 2015. A sequencing-based linkage map of cucumber. Molecular Plant. 8(6):961-963.
Leaf waxes and thrips resistance in onion - (Trade Journal)
Havey, M.J. 2015. Leaf waxes and thrips resistance in onion. Onion World. 31(3):10-11.
Diallel crossing among doubled haploids of cucumber reveals significant reciprocal-cross differences     Reprint Icon - (Peer Reviewed Journal)
Shen, J., Dirks, R., Havey, M.J. 2015. Diallel crossing among doubled haploids of cucumber reveals significant reciprocal-cross differences. Journal of the American Society for Horticultural Science. 140(2):178-182.
Ultrahigh-density linkage map for cultivated cucumber (Cucumis sativus L.) using a single-nucleotide polymorphism genotyping array     Reprint Icon - (Peer Reviewed Journal)
Rubinstein, M., Katzenellenbogen, M., Eshed, R., Rozen, A., Katzir, N., Colle, M., Yang, L., Grumet, R., Weng, Y., Sherman, A., Ophir, R. 2015. Ultrahigh-density linkage map for cultivated cucumber (Cucumis sativus L.) using a single-nucleotide polymorphism genotyping array. PLoS One. 10(4):e0124101.
Epicuticular waxes and thrips resistance in onion - (Abstract Only)
Havey, M.J., Damon, S.J., Duangjit, J., Groves, R., Bohanec, B., Town, C.D. 2015. Epicuticular waxes and thrips resistance in onion [abstract]. International Symposium on the Edible Alliaceae. Paper No. O150127002.
Fine mapping of short hypocotyl locus in semi-wild Xishuangbanna cucumber - (Abstract Only)
Weng, Y., Bo, K., Yang, L., Simon, P.W., Chen, J. 2015. Fine mapping of short hypocotyl locus in semi-wild Xishuangbanna cucumber [abstract]. Plant and Animal Genome Conference. Paper No. P0932.
Vegetables of temperate climates: Carrot, parsnip and beetroot - (Book / Chapter)
Tanumihardjo, S.A., Suri, D., Simon, P., Goldman, I.L. 2016. Vegetables of temperate climates: Carrot, parsnip and beetroot. In: Caballero, B., Finglas, P.M., Toldra, F., editors. Enclyclopedia of Food and Health. Volume 5. Waltham, MA:Academic Press. p. 387-392.
A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation     Reprint Icon - (Peer Reviewed Journal)
Cavagnaro, P.F., Iorizzo, M., Yildiz, M., Senalik, D.A., Parsons, J., Ellison, S., Simon, P.W. 2014. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation. Biomed Central (BMC) Genomics. 15:1118.
The mosaic mutants of cucumber: A system to produce mitochondrial knock-downs - (Abstract Only)
Del Valle-Echevarria, A.R., Bartoszewski, G., Havey, M.J. 2015. The mosaic mutants of cucumber: A system to produce mitochondrial knock-downs [abstract]. Plant and Animal Genome Conference. Paper No. W545.
Why are there so many molecular markers tagging the Ms locus of onion - (Abstract Only)
Havey, M.J., Khrustaleva, L.I. 2014. Why are there so many molecular markers tagging the Ms locus of onion [abstract]. National Allium Research Conference. Paper No. 4.
Genetic analyses of anthocyanin concentrations and the intensity of red color in onion - (Abstract Only)
Duangjit, J., Welsh, K., Wise, M.L., Havey, M.J. 2014. Genetic analyses of anthocyanin concentrations and the intensity of red color in onion [abstract]. National Allium Research Conference. Paper No. 5.
Epicuticular waxes on onion leaves and associated resistance to onion thrips - (Abstract Only)
Damon, S., Groves, R., Havey, M.J. 2014. Epicuticular waxes on onion leaves and associated resistance to onion thrips [abstract]. National Allium Research Conference. Paper No. III-3.
Analysis of wild-species introgressions in tomato inbreds uncovers ancestral origins     Reprint Icon - (Peer Reviewed Journal)
Menda, N., Strickler, S.R., Edwards, J.D., Bombarely, A., Dunham, D.M., Martin, G.B., Mejia, L., Hutton, S.F., Havey, M.J., Maxwell, D.P., Mueller, L.A. 2014. Analysis of wild-species introgressions in tomato inbreds uncovers ancestral origins. Biomed Central (BMC) Genomics. 14(10):287-303.
Molecular mapping reveals structural rearrangements and quantitative trait loci underlying traits with local adaptation in semi-wild Xishuangbanna cucumber (Cucumis sativus L. var. xishuangbannanesis Qi et Yuan)     Reprint Icon - (Peer Reviewed Journal)
Bo, K., Ma, Z., Chen, J., Weng, Y. 2014. Molecular mapping reveals structural rearrangements and quantitative trait loci underlying traits with local adaptation in semi-wild Xishuangbanna cucumber (Cucumis sativus L. var. xishuangbannanesis Qi et Yuan). Theoretical and Applied Genetics. 128(1):25-39.
Meloidogyne incognita nematode resistance QTL in carrot - (Peer Reviewed Journal)
Parsons, J., Matthews, W., Iorizzo, M., Roberts, P., Simon, P. 2015. Meloidogyne incognita nematode resistance QTL in carrot. Molecular Breeding. 35:114. doi: 10.1007/s11032-015-0309-2.
QTL mapping of flowering time and fruit shape in Xishuangbana cucumber WI767 (Cucumis sativus L. var. xishuangbannanesis Qi et Yuan) - (Proceedings)
Qu, S., Pan, Y., Weng, Y. 2014. QTL mapping of flowering time and fruit shape in Xishuangbana cucumber WI767 (Cucumis sativus L. var. xishuangbannanesis Qi et Yuan). Cucurbitaceae Proceedings. p. 13.
QTLs for downy mildew resistance and their association with LRR-RLK resistance gene analogs in cucumber - (Proceedings)
Wang, Y., Vandenlangenberg, K., Wehner, T.C., Weng, Y. 2014. QTLs for downy mildew resistance and their association with LRR-RLK resistance gene analogs in cucumber. Cucurbitaceae Proceedings. p. 31.
Molecularly tagged genes and quantitative trait loci in cucumber - (Proceedings)
Weng, Y. 2014. Molecularly tagged genes and quantitative trait loci in cucumber. Cucurbitaceae Proceedings. Paper No. 48.
Molecularly tagged genes and quantitative trait loci in cucumber - (Proceedings)
Weng, Y. 2014. Molecularly tagged genes and quantitative trait loci in cucumber. Cucurbitaceae Proceedings. p. A8.
Iris yellow spot virus (Tospovirus: Bunyaviridae): from obscurity to research priority - (Review Article)
Bag, S., Schwartz, H.F., Cramer, C.S., Havey, M.J., Pappu, H.R. 2014. Iris yellow spot virus (Tospovirus: Bunyaviridae): from obscurity to research priority. Molecular Plant Pathology. 16:27.
Quantitative trait loci controlling amounts and types of epicuticular waxes in onion     Reprint Icon - (Peer Reviewed Journal)
Damon, S.J., Havey, M.J. 2014. Quantitative trait loci controlling amounts and types of epicuticular waxes in onion. Journal of the American Society for Horticultural Science. 139(5):597-602.
Genetic and environmental effects on production of spontaneous tetraploids in cucumber (Cucumis sativus L.) - (Abstract Only)
Ramirez-Madera, A.O., Havey, M.J., Weng, Y. 2014. Genetic and environmental effects on production of spontaneous tetraploids in cucumber (Cucumis sativus L.) [abstract]. National Association of Plant Breeders. Paper No. 51.
Development and validation of new SSR markers from expressed regions in the garlic genome     Reprint Icon - (Peer Reviewed Journal)
Ipek, M., Sahin, N., Ipek, A., Cansev, A., Simon, P.W. 2015. Development and validation of new SSR markers from expressed regions in the garlic genome. Scientia Horticulturae. 72(1):41-46.
Genetic basis of mitochondrial sorting in cucumber - (Proceedings)
Del-Valle Echevarria, A., Al-Faifi, S., Calderon, C., Sanseverino, W., Tormo, M., Garcia-Mas, J., Havey, M.J. 2014. Genetic basis of mitochondrial sorting in cucumber. Cucurbitaceae Proceedings. p. A15.
Variation for epicuticular waxes on onion foliage and impacts on numbers of onion thrips - (Peer Reviewed Journal)
Damon, S., Groves, R., Havey, M.J. 2014. Variation for epicuticular waxes on onion foliage and impacts on numbers of onion thrips. Journal of the American Society for Horticultural Science. 139(4):495-501.
QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumber     Reprint Icon - (Peer Reviewed Journal)
Lu, H., Lin, T., Klein, J., Wang, S., Qi, J., Zhou, Q., Sun, J., Zhang, Z., Weng, Y., Huang, S. 2014. QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumber. Theoretical and Applied Genetics. 127(7):1491-1499.
Genetic basis of mitochondrial sorting in cucumber - (Abstract Only)
Del-Valle Echevarria, A., Sanseverino, W., Tormo, M., Garcia-Mas, J., Al-Faifi, S., Calderon, C., Havey, M.J. 2014. Genetic basis of mitochondrial sorting in cucumber [abstract]. Cucurbitacea. Paper No. A15.
Evaluation of onion germplasm for resistance to Iris yellow spot (Iris yellow spot virus) and onion thrips, Thrips tabaci     Reprint Icon - (Peer Reviewed Journal)
Boateng, C.O., Schwartz, H.F., Havey, M.J., Otto, K. 2014. Evaluation of onion germplasm for resistance to Iris yellow spot (Iris yellow spot virus) and onion thrips, Thrips tabaci. Southwestern Entomologist. 39(2):237-260.
Conversion of a diversity arrays technology marker differentiating wild and cultivated carrots to a co-dominant cleaved amplified polymorphic site marker     Reprint Icon - (Peer Reviewed Journal)
Macko-Podgorni, A., Iorizzo, M., Smolka, K., Simon, P.W., Grzebelus, D. 2014. Conversion of a diversity arrays technology marker differentiating wild and cultivated carrots to a co-dominant cleaved amplified polymorphic site marker. Acta Biochimica Polonica. 61(1):19-22.
Incidence and severity of cavity spot of carrot as affected by pigmentation, temperature, and rainfall     Reprint Icon - (Peer Reviewed Journal)
Saude, C., Simon, P.W., McDonald, M.R. 2014. Incidence and severity of cavity spot of carrot as affected by pigmentation, temperature, and rainfall. Plant Disease. 98(7):929-936.
First report of bacterial blight of carrot in Indiana caused by Xanthomonas hortorum pv. carotae     Reprint Icon - (Peer Reviewed Journal)
Du Toit, L.J., Derie, M.L., Christianson, C.E., Hoagland, L., Simon, P.W. 2014. First report of bacterial blight of carrot in Indiana caused by Xanthomonas hortorum pv. carotae . Plant Disease. 98(5):685.
Genetic analyses of anthocyanin concentrations and intensity of red bulb color among segregating haploid progenies of onion     Reprint Icon - (Peer Reviewed Journal)
Duangjit, J., Welsh, K., Wise, M.L., Bohanec, B., Havey, M.J. 2014. Genetic analyses of anthocyanin concentrations and intensity of red bulb color among segregating haploid progenies of onion. Molecular Breeding. 34(1):75-85.
Progress toward increasing intake of dietary nutrients from vegetables and fruits: The case for a greater role for the horticultural sciences     Reprint Icon - (Peer Reviewed Journal)
Simon, P.W. 2014. Progress toward increasing intake of dietary nutrients from vegetables and fruits: The case for a greater role for the horticultural sciences. HortScience. 49(2):112-115.
A method of genotyping by pedigree-based training-set for identification of QTLs associated with cucumber fruit size - (Abstract Only)
Ophir, R., Rubinstein, M., Eshed, R., Katzir, N., Colle, M., Grumet, R., Yang, L., Weng, Y., Sherman, A. 2014. A method of genotyping by pedigree-based training-set for identification of QTLs associated with cucumber fruit size [abstract]. Plant and Animal Genome Conference. Paper No. W237.
Mechanisms of decreasing dysploidy in Cucumis - (Abstract Only)
Yang, L., Koo, D., Li, D., Jiang, J., Luan, F., Renner, S.S., Henaff, E., Sanseverino, W., Garcia-Mas, J., Casacuberta, J., Senalik, D.A., Simon, P.W., Chen, J., Weng, Y. 2014. Mechanisms of decreasing dysploidy in Cucumis [abstract]. Plant and Animal Genome Conference. Paper No. W233.
Genome-wide characterization of microsatellites in Cucumis hystrix and in silico identification of polymorphic SSR markers - (Abstract Only)
Yang, L., Weng, Y. 2014. Genome-wide characterization of microsatellites in Cucumis hystrix and in silico identification of polymorphic SSR markers [abstract]. Plant and Animal Genome Conference. Paper No. P689.
Sequencing and annotation of the chloroplast DNAs and identification of polymorphisms distinguishing normal male-fertile and male-sterile cytoplasms of onion     Reprint Icon - (Peer Reviewed Journal)
von Kohn, C., Kielkowska, A., Havey, M.J. 2013. Sequencing and annotation of the chloroplast DNAs and identification of polymorphisms distinguishing normal male-fertile and male-sterile cytoplasms of onion. Genome. 56(12):737-742.
Testing the utility of matK and ITS DNA regions for discrimination of Allium species     Reprint Icon - (Peer Reviewed Journal)
Ipek, M., Ipek, A., Simon, P.W. 2014. Testing the utility of matK and ITS DNA regions for discrimination of Allium species. Turkish Journal of Botany. 38(2):203-212.
Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers     Reprint Icon - (Peer Reviewed Journal)
Grzebelus, D., Iorizzo, M., Senalik, D.A., Ellison, S., Cavagnaro, P., Macko-Podgorni, A., Heller-Uszynska, K., Kilian, A., Nothnagel, T., Allender, C., Simon, P.W., Baranski, R. 2014. Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers . Molecular Breeding. 33(3):625-637.
Formation of norisoprenoid flavor compounds in carrot (Daucus carota L.) roots: characterization of a cyclic-specific carotenoid cleavage dioxygenase 1 gene     Reprint Icon - (Peer Reviewed Journal)
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