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United States Department of Agriculture

Agricultural Research Service

Research Project: Improving Fruit Quality, Disease Resistance, and Tolerance to Abiotic Stress in Grape

Location: Grape Genetics Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Foreword: Special issue on fungal grapevine diseases - (Peer Reviewed Journal)
(20-Apr-16)
Climate and developmental plasticity: interannual variability in grapevine leaf morphology - (Peer Reviewed Journal)
Chitwood, D.H., Rundell, S.M., Li, D.Y., Woodford, Q.L., Yu, T.T., Lopez, J.R., Kang, J., Londo, J.P. 2016. Climate and developmental plasticity: interannual variability in grapevine leaf morphology. Plant Physiology. doi: http://dx.doi.org/10.1101/030957.
A next-generation marker genotyping platform (AmpSeq) in heterozygous crops: a case study for marker assisted selection in grapevine - (Peer Reviewed Journal)
Yang, S., Fresnedo, J., Wang, M., Cote, L., Bogdanowicz, S., Schweitzer, P., Barba, P., Takacs, E., Clark, M., Luby, J., Manns, D., Sacks, G., Mansfield, A., Londo, J.P., Fennel, A., Gadoury, D., Reisch, B., Cadle Davidson, L.E., Sun, Q. 2016. A next-generation marker genotyping platform (AmpSeq) in heterozygous crops: a case study for marker assisted selection in grapevine. Horticulture Research. 3:16002.doi:10.1038/hortres.2016.2.
Next generation mapping of enological traits in an F2 interspecific grapevine hybrid family - (Peer Reviewed Journal)
Yang, S., Fresnedo, J., Sun, Q., Manns, D., Sacks, G., Awale, M., Mansfield, A., Luby, J., Londo, J.P., Reisch, B., Cadle Davidson, L.E., Fennell, A. 2016. Next generation mapping of enological traits in an F2 interspecific grapevine hybrid family. PLoS One. 11(3):e0149560. doi:10.1371/journal.pone.0149560.
Comparing RNA-seq and GBS to identify SNPs useful for determining population structure in obligate biotrophic pathogens Pseudoperonospora cubensis and P. humuli - (Peer Reviewed Journal)
Summers, C., Gulliford, C., Lillis, J.A., Carlson, M., Cadle Davidson, L.E., Gent, D.H., Smart, C. 2015. Comparing RNA-seq and GBS to identify SNPs useful for determining population structure in obligate biotrophic pathogens Pseudoperonospora cubensis and P. humuli. PLoS One. doi: 10.1371/journal.pone.0143665.
Leaves as composites of latent developmental and evolutionary shapes - (Peer Reviewed Journal)
Chitwood, D., Klein, L., Miller, A., Londo, J.P. 2016. Leaves as composites of latent developmental and evolutionary shapes. New Phytologist. 210 (1): 343-55.
Rootstocks: diversity, domestication and impacts on shoot phenotypes - (Review Article)
Warschefsky, E., Bishop-Von Wettberg, E., Chitwood, D., Frank, M., Klein, L., Londo, J.P., Miller, A. 2015. Rootstocks: diversity, domestication and impacts on shoot phenotypes. Trends in Plant Science. DOI: http//dx.doi.org/10.106/j.tplants.2015.11.008.
A next-generation marker genotyping platform (AmpSeq) in heterozygous crops: A case study for marker assisted selection in grapevine     Reprint Icon - (Abstract Only)
Yang, S., Fresnedo, J., Wang, M., Cote, L., Schweitzer, P., Barba, P., Takacs, E., Clark, M., Luby, J., Manns, D., Sacks, G., Mansfield, A., Londo, J.P., Fennell, A., Gadoury, D., Reisch, B., Cadle Davidson, L.E., Sun, Q. 2016. A Next-Generation Marker Genotyping Platform (AmpSeq) in Heterozygous Crops: A Case Study for Marker Assisted Selection in Grapevine. Plant and Animal Genome Conference.
Genetic dissection of powdery mildew resistance in interspecific half-sib grapevine families using SNP-based maps     Reprint Icon - (Abstract Only)
Teh, S., Clark, M., Fresnedo, J., Sun, Q., Cadle Davidson, L.E., Luby, J. 2016. Genetic dissection of powdery mildew resistance in interspecific half-sib grapevine families using SNP-based maps. Plant and Animal Genome Conference. 1.
Free the tannins: the role of grape pathogenesis-related proteins in limiting condensed tannin extraction during winemaking - (Abstract Only)
Sacks, G., Springer, L., Fresnedo, J., Yang, S., Takacs, E., Reisch, B., Cadle Davidson, L.E. 2016. Free the tannins: the role of grape pathogenesis-related proteins in limiting condensed tannin extraction during winemaking. Plant and Animal Genome Conference. https://pag.confex.com/pag/xxiv/meetingapp.cgi/Paper/20053.
Genetics of downy mildew resistance in two interspecific hybrid grapevine families - (Abstract Only)
Divilov, K., Barba, P., Cadle Davidson, L.E., Reisch, B. 2016. Genetics of downy mildew resistance in two interspecific hybrid grapevine families. Plant and Animal Genome Conference. https://pag.confex.com/pag/xxiv/meetingapp.cgi/Paper/20666.
A Phocus on Phenotyping: opportunities and challenges in local and centralized trait evaluation from the VitisGen experience - (Abstract Only)
Cadle Davidson, L.E., Sacks, G., Fennell, A., Gadoury, D., Sun, Q., Schweitzer, P., Londo, J.P., Ledbetter, C.A., Clark, M., Luby, J., Hemstad, P., Hegeman, A., Teh, S., Manns, D., Barba, P., Hwang, C., Sapkota, S., Chen, L., Fresnedo, J., Yang, S., Takacs, E., Reisch, B. 2016. A Phocus on Phenotyping: opportunities and challenges in local and centralized trait evaluation from the VitisGen experience. Plant and Animal Genome Conference. https://pag.confex.com/pag/xxiv/meetingapp.cgi/Paper/18722.
Using the combined analysis of transcripts and metabolites to propose key genes for differential terpene accumulation across two regions - (Peer Reviewed Journal)
Wen, Y., Zhong, G., Gao, Y., Lan, Y., Duan, C., Pan, Q. 2015. Using the combined analysis of transcripts and metabolites to propose key genes for differential terpene accumulation across two regions. Biomed Central (BMC) Plant Biology. 15:240. DOI: 10.1186/s12870-015-0631-1.
Messenger RNA exchange between scions and rootstocks in grafted grapevines - (Peer Reviewed Journal)
Yang, Y., Mao, L., Jittayasothorn, Y., Kang, Y., Jiao, C., Fei, Z., Zhong, G. 2015. Messenger RNA exchange between scions and rootstocks in grafted grapevines. Biomed Central (BMC) Plant Biology. 15:251.
Cold Stress-Induced Disease Resistance(SIDR): Indirect effects of low temperatures on host-pathogen interactions and disease progress in the grapevine powdery mildew pathosystem     Reprint Icon - (Peer Reviewed Journal)
Moyer, M., Londo, J.P., Gadoury, D., Cadle Davidson, L.E. 2015. Cold Stress-Induced Disease Resistance(SIDR): Indirect effects of low temperatures on host-pathogen interactions and disease progress in the grapevine powdery mildew pathosystem. European Journal of Plant Pathology. DOI 10.1007/s10658-015-074-1.
Uncovering co-expression gene network regulating fruit acidity in diverse apples - (Peer Reviewed Journal)
Bai, Y., Dougherty, L., Cheng, L., Zhong, G., Xu, K. 2015. Uncovering co-expression gene network regulating fruit acidity in diverse apples. Biomed Central (BMC) Genomics. 16(1):612. DOI:10.1186/s12864-015-1816-6.
Heterozygous Mapping Strategy (HetMapps)for High Resolution Genotyping-by-Sequencing Markers: a case study in grapevine.     Reprint Icon - (Peer Reviewed Journal)
Hyma, K., Barba, P., Wang, M., Londo, J.P., Acharya, C., Mitchell, S., Sun, Q., Reisch, B., Cadle Davidson, L.E. 2015. Heterozygous Mapping Strategy (HetMapps)for High Resolution Genotyping-by-Sequencing Markers: a case study in grapevine.. PLoS One. 10(8):e0134880. DOI 10.1371/journal/pone.0134880 (online only).
Population structure of Vitis rupestris, an important resource for viticulture - (Peer Reviewed Journal)
Pap, D., Miller, A., Londo, J.P., Kovacs, L. 2015. Population structure of Vitis rupestris, an important resource for viticulture. American Journal of Enology and Viticulture. 66:403-410.
Application of genotyping-by-sequencing for mapping disease resistance in grapevine breeding families - (Abstract Only)
Cadle Davidson, L.E., Paola, B., Sun, Q., Hyma, K., Takacs, E., Lillis, J.A., Ledbetter, C.A., Ramming, D.W., Reisch, B. 2015. Application of genotyping-by-sequencing for mapping disease resistance in grapevine breeding families. American Phytopathological Society Annual Meeting. 104(11):152.
Effect of detergent on the quantification of grapevine downy mildew Sporangia from leaf discs - (Peer Reviewed Journal)
Kono, A., Sato, A., Reisch, B., Cadle Davidson, L.E. 2015. Effect of detergent on the quantification of grapevine downy mildew Sporangia from leaf discs. HortScience. 50(5):656-660.
Strategies for durable resistance to the grapevine powdery mildew fungus, Erysiphe necator - (Abstract Only)
Cadle Davidson, L.E. 2015. Strategies for durable resistance to the grapevine powdery mildew fungus, Erysiphe necator. American Phytopathological Society Annual Meeting. Phytopathology 105:S.
Mechanisms of quantitative resistance to Erysiphe necator in Vitis rupestris B38     Reprint Icon - (Peer Reviewed Journal)
Barba, P., Galarneau, E., Reisch, B., Cadle Davidson, L.E. 2015. Mechanisms of quantitative resistance to Erysiphe necator in Vitis rupestris B38. Phytopathology. DOI. http://dx.doi.org/10.1094/PHYTO-09-14-0260-R.
Benefits of transgenic insect resistance in Brassica hybrids under selection - (Peer Reviewed Journal)
Sagers, C., Londo, J.P., Bautista, N., Lee, E.H., King, G., Watrud, L. 2015. Benefits of transgenic insect resistance in Brassica hybrids under selection. Journal of Agronomy. 5(1):21-34.
Geographic trend of bud hardiness response in Vitis riparia     Reprint Icon - (Peer Reviewed Journal)
Londo, J.P., Martinson, T. 2015. Geographic trend of bud hardiness response in Vitis riparia. Acta Horticulturae. (ISHS) 1082:299-304.
Strategies for RUN1 deployment using RUN2 and REN2 to manage grapevine powdery mildew informed by studies of race-specificity - (Peer Reviewed Journal)
Feechan, A., Kocsis, M., Riaz, S., Zhang, W., Walker, A., Dry, I., Reisch, B., Cadle Davidson, L.E. 2015. Strategies for RUN1 deployment using RUN2 and REN2 to manage grapevine powdery mildew informed by studies of race-specificity. Phytopathology. DOI: 10.1094/Phyto-09-14-0244-R.
VitisGen on the road: mapping the way to the next generation of grapes     Reprint Icon - (Abstract Only)
Yang, S., Fresnedo, J., Takacs, E., Barba, P., Hyma, K., Lillis, J.A., Acharya, C., Fisher, A., Cote, L., Manns, D., Ryona, I., Gadoury, D., Seem, B., Sacks, G., Mansfield, A., Ledbetter, C.A., Luby, J., Hemstad, P., Fennell, A., Hwang, C., Walker, A., Riaz, S., Cousins, P., Londo, J.P., Buckler Iv, E.S., Mitchell, S., Schweitzer, P., Sun, Q., Cadle Davidson, L.E., Reisch, B. 2015. VitisGen on the road: mapping the way to the next generation of grapes. Annual International Plant & Animal Genome Conference. P0873: 15597.
An update on VitisGen: recent advances in using DNA marker technologies in U.S. grape breeding programs - (Abstract Only)
Cadle Davidson, L.E., Reisch, B., Sun, Q., Schweitzer, P., Londo, J.P., Ledbetter, C.A., Luby, J., Hemstad, P., Hegeman, A., Teh, S., Manns, D., Barba, P., Hyma, K., Lillis, J.A., Fresnedo, J., Yang, S., Takacs, E. 2015. An update on VitisGen: recent advances in using DNA marker technologies in U.S. grape breeding programs. Annual International Plant & Animal Genome Conference. W419: 14264.
QTL identification in an interspecific grapevine cross segregating for resistance to Powdery Mildew, Downy Mildew, Black Rot, and Phylloxera - (Abstract Only)
Teh, S., Clark, M., Hemstad, P., Fresnedo, J., Sun, Q., Cadle Davidson, L.E., Hegeman, A., Luby, J. 2015. QTL identification in an interspecific grapevine cross segregating for resistance to Powdery Mildew, Downy Mildew, Black Rot, and Phylloxera. Annual International Plant & Animal Genome Conference, San Diego, CA.
Fast and robust generation of high-resolution genetic maps in grapevine interspecific hybrid half-sib families using the HetMappS pipeline and R/qtl - (Abstract Only)
Barba, P., Hyma, K., Wang, M., Londo, J.P., Acharya, C., Mitchell, S., Sun, Q., Reisch, B., Cadle Davidson, L.E. 2015. Fast and robust generation of high-resolution genetic maps in grapevine interspecific hybrid half-sib families using the HetMappS pipeline and R/qtl. Annual International Plant & Animal Genome Conference, San Diego, CA.
HetMappsS: Heterozygous mapping strategy for high resolution Genotyping-by-Sequencing Markers - (Abstract Only)
Hyma, K., Barba, P., Wang, M., Londo, J.P., Hare, M., Acharya, C., Mitchell, S., Sun, Q., Reisch, B., Cadle Davidson, L.E. 2015. HetMappsS: Heterozygous mapping strategy for high resolution Genotyping-by-Sequencing Markers. Annual International Plant & Animal Genome Conference, San Diego, CA.
Silencing of grapevine pectate lyase-like genes VvPLL2 and VvPLL3 confers resistance against Erysiphe necator and differentially modulates gene expression - (Abstract Only)
Majumdar, R., Mahanil, S., Lillis, J.A., Osier, M., Reisch, B., Cadle Davidson, L.E. 2015. Silencing of grapevine pectate lyase-like genes VvPLL2 and VvPLL3 confers resistance against Erysiphe necator and differentially modulates gene expression. Annual International Plant & Animal Genome Conference, San Diego, CA.
Application of Genotyping-By-Sequencing for selection of locus-specific BAC clones to construct physical maps and identify candidate genes in Vitis     Reprint Icon - (Abstract Only)
Lillis, J.A., Majumdar, R., Ledbetter, C.A., Cadle Davidson, L.E. 2015. Application of Genotyping-By-Sequencing for selection of locus-specific BAC clones to construct physical maps and identify candidate genes in Vitis. Annual International Plant & Animal Genome Conference. P0876: 15550.
Hybrid and selfed seedling progenies of Vitis hybrid ‘Roger’s Red’ grape segregate for tendril distribution - (Proceedings)
Cousins, P., Zhong, G. 2015. Hybrid and selfed seedling progenies of Vitis hybrid ‘Roger’s Red’ grape segregate for tendril distribution. Acta Horticulturae Proceedings (ISHS) 1082:373-378.
Genome-wide identification of WRKY family genes and their response to cold stress in Vitis vinifera - (Peer Reviewed Journal)
Wang, L., Zhu, W., Fang, L., Sun, X., Su, L., Wang, N., Liang, Z., Londo, J.P., Li, S., Xin, H. 2014. Genome-wide identification of WRKY family genes and their response to cold stress in Vitis vinifera. Biomed Central (BMC) Plant Biology. 14(1):103. DOI:10.1186/1471-2229-14-103.
Sub-lethal glyphosate exposure increases outcrossing potential in Brassica spp. by altering flowering phenology and causing transient male-sterility - (Peer Reviewed Journal)
Londo, J.P., Mckinney, J., Schwartz, M., Bollman, M., Sagers, C., Watrud, L. 2014. Sub-lethal glyphosate exposure increases outcrossing potential in Brassica spp. by altering flowering phenology and causing transient male-sterility. Biomed Central (BMC) Plant Biology. doi:10.1186/1471-2229-14-70.
Evaluating wild grapevine germplasm with genotyping-by-sequencing methods for conservation, preservation, genetics and breeding - (Abstract Only)
(17-Mar-14)
Multiple loss-of-function 5-O-Glucosyltransferase alleles revealed in Vitis vinifera, but not in other Vitis species - (Abstract Only)
(17-Jan-14)
16D10 siRNAs inhibit root-knot nematode infection in transgenic grape hairy roots - (Abstract Only)
(17-Jan-14)
QTL analysis of fruit quality traits in muscadine grapes - (Abstract Only)
(17-Jan-14)
Genetic and protein sequence variation of CBF1-4 in cold hardy wild grapevine germplasm - (Peer Reviewed Journal)
Londo, J.P., Garris, A. 2014. Genetic and protein sequence variation of CBF1-4 in cold hardy wild grapevine germplasm. Vitis. 53(4):201-206.
Variation in winter survival mechanisms in cultivated and wild grapevine - (Abstract Only)
(17-Jan-14)
Selection, fitness, and control of grape isolates of Botrytis cinerea variably sensitive to fenhexamid - (Peer Reviewed Journal)
Saito, S., Cadle Davidson, L.E., Wilcox, W. 2014. Selection, fitness, and control of grape isolates of Botrytis cinerea variably sensitive to fenhexamid. Plant Disease. 98:233-240.
VitisGen: A coordinated effort in grapevine genotyping, phenotyping, and marker assisted breeding. - (Abstract Only)
Reisch, B., Cadle Davidson, L.E., Londo, J.P., Takacs, E., Hyma, K., Sun, Q., Barba, P., Fennell, A. 2014. VitisGen: A coordinated effort in grapevine genotyping, phenotyping, and marker assisted breeding. International Symposium of Grapevine Physiology and Biotechnology, Serena, Chile.
Mechanisms of resistance to an azole fungicide in the grapevine powdery mildew fungus, Erysiphe necator - (Peer Reviewed Journal)
Frenkel, O., Cadle Davidson, L.E., Wilcox, W., Milgroom, M. 2014. Mechanisms of resistance to an azole fungicide in the grapevine powdery mildew fungus, Erysiphe necator. Phytopathology. 105(3):370-377.
QTL analysis of fruit cluster abundance in grape (Vitis sp.) - (Peer Reviewed Journal)
(17-Jan-14)
Grape Pigments - (Book / Chapter)
Owens, C.L. 2015. Grape Pigments in Pigments in Fruits and Vegetables: Genomics and Dietetics. Springer. Chunxian, C. (ed.), pp. 189-204.
Comparative transcriptomics of wild North American Vitis species - (Abstract Only)
(17-Jan-14)
Genetic and protein sequence variation of CBF1-4 in cold hardy wild grapevine germplasm - (Peer Reviewed Journal)
Londo, J.P., Garris, A. 2014. Genetic and protein sequence variation of CBF1-4 in cold hardy wild grapevine germplasm. Vitis. 53 (4): 201-206.
Variation in the chilling requirement and bud burst rate of wild Vitis species - (Peer Reviewed Journal)
Londo, J.P., Johnson, L.M. 2014. Variation in the chilling requirement and bud burst rate of wild Vitis species. Environmental and Experimental Botany. 160: 138-147.
Last Modified: 7/27/2016
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