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United States Department of Agriculture

Agricultural Research Service

Research Project: Genomic and Genetic Analysis of Crop Adaptation to Soil Abiotic Stresses

Location: Plant, Soil and Nutrition Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

The raf-like kinase ILK1 and the high affinity K+ transporter HAK5 are required for innate immunity and abiotic stress response - (Peer Reviewed Journal)
Brauer, E.K., Ahsan, N., Dale, R., Kato, N., Coluccio, A.E., Pineros, M., Kochian, L.V., Thelen, J.J., Popescu, S. 2016. The raf-like kinase ILK1 and the high affinity K+ transporter HAK5 are required for innate immunity and abiotic stress response. Plant Physiology. doi: 10.1104/pp.16.00035.
Plant vasculature-mediated signaling involved in early phosphate stress response - (Peer Reviewed Journal)
Zhang, Z., Zheng, Y., Ham, B., Chen, J., Yoshida, A., Kochian, L.V., Fei, Z., Lucas, B. 2016. Plant vasculature-mediated signaling involved in early phosphate stress response. Nature Plants. doi: 10.1038/nplants.2016.33.
Advances and considerations in technologies for growing, imaging, and analyzing 3-D root system architecture - (Peer Reviewed Journal)
Pineros, M., Larson, B., Shaff, J., Schneider, D.J., Falcao, A., Lixing, Y., Clark, R.T., Craft, E.J., Davis, T.W., Pradier, P., Liu, J., Assaranurak, I., Susan, M., Sturrock, C., Bennett, M., Kochian, L.V. 2016. Advances and considerations in technologies for growing, imaging, and analyzing 3-D root system architecture. Journal of Integrative Plant Biology. 58(3):230-241.
How high do ion fluxes go? A re-evaluation of the two-mechanism model of K+ 2 transport in plant roots - (Peer Reviewed Journal)
Coskun, D., Britto, D.T., Kochian, L.V., Kronzucker, H.J. 2015. How high do ion fluxes go? A re-evaluation of the two-mechanism model of K+ 2 transport in plant roots. Plant Science. 243:96-104.
Duplicate and conquer: multiple homologs of phosphorus-starvation tolerance 1 enhance phosphorus acquisition and sorghum performance on low-P soils - (Peer Reviewed Journal)
Hufnagel, B., De Sousa, S.M., Assis, L., Guimaraes, C.T., Leiser, W., Corradi, G., Negri, B., Larson, B.G., Shaff, J.E., Pastina, M., Barros, B.A., Weltzien, E., Rattunde, H.W., Viana, J.H., Clark, R.T., Falcao, A., Gazaffi, R., Garcia, A.F., Schaffert, R.E., Kochian, L.V., Magalhaes, J.V. 2014. Duplicate and conquer: multiple homologs of phosphorus-starvation tolerance 1 enhance phosphorus acquisition and sorghum performance on low-P soils. Plant Physiology. 166(2):659-677.
Plant adaptation to acid soils: the molecular basis for crop aluminum resistance - (Review Article)
Kochian, L.V., Pineros, M., Liu, J., Magalhaes, J. 2015. Plant adaptation to acid soils: the molecular basis for crop aluminum resistance. Annual Reviews of Plant Biology. 66:571-598. DOI: 10.1146/annualrev-arplant-043014-114822.
OPT3 is a phloem-specific iron transporter that is essential for systemic iron signaling and redistribution of iron and cadmium in arabidopsis - (Peer Reviewed Journal)
Zhiyang, Z., Gayomba, S.R., Jung, H., Vimalakumar, N.K., Pineros, M., Rutzke, M., Danku, J., Lahner, B., Punshon, T., Guerinot, M., Salt, D.D., Kochian, L.V., Vatamaniuk, O.K. 2014. OPT3 is a phloem-specific iron transporter that is essential for systemic iron signaling and redistribution of iron and cadmium in arabidopsis. The Plant Cell. DOI: http:dx.doi.org/10.1105/tpc.114.123737.
Natural variation underlies alterations in NRAT1 expression and function that play a key role in rice aluminum tolerance - (Peer Reviewed Journal)
Li, J., Liu, J., Dong, D., Jia, X., Mccouch, S., Kochian, L.V. 2014. Natural variation underlies alterations in NRAT1 expression and function that play a key role in rice aluminum tolerance. Proceedings of the National Academy of Sciences. 111(17):6503-6508.
Natural variation underlies alterations in Nramp aluminum transporter (NRAT1) expression and function that play a key role in rice aluminum tolerance - (Peer Reviewed Journal)
Lyi, J., Liu, J., Dong, D., Jia, X., Mccouch, S., Kochian, L.V. 2014. Natural variation underlies alterations in Nramp aluminum transporter (NRAT1) expression and function that play a key role in rice aluminum tolerance. Proceedings of the National Academy of Sciences. 111(17):6503-6508.
Effect of aluminum treatment on proteomes of radicles of seeds derived from Al-treated tomato plants - (Peer Reviewed Journal)
Okekeogbu, I., Ye, Z., Sangireddy, S.R., Li, H., Bhatti, S., Zhou, S., Howe, K.J., Fish, T., Yang, Y., Thannhauser, T.W. 2014. Effect of aluminum treatment on proteomes of radicles of seeds derived from Al-treated tomato plants. Proteomes. 2(2):169-190.
Root and shoot transcriptome analysis of two ecotypes of Noccaea caerulescens uncovers the role of NcNramp1 in Cd hyperaccumulation - (Peer Reviewed Journal)
Milner, M., Mitani-Ueno, N., Yamaji, N., Yokosho, K., Craft, E.J., Fei, Z., Ebbs, S., Ma, J., Kochian, L.V. 2014. Root and shoot transcriptome analysis of two ecotypes of Noccaea caerulescens uncovers the role of NcNramp1 in Cd hyperaccumulation. Plant Journal. 78:398-410.
Genetic dissection of Al tolerance QTLs in the maize genome by high density SNP scan - (Peer Reviewed Journal)
Guimaraes, C.T., Simoes, C.C., Lyza, M.G., Pastina, M.M., Magalhaes, J.V., Vasconcellos, R., Guimaraes, L., Lana, U., Tinoco, C., Noda, R.W., Jardim-Belicuas, S.N., Parentoni, S.N., Alves, V., Kochian, L.V. 2014. Genetic dissection of Al tolerance QTLs in the maize genome by high density SNP scan. Biomed Central (BMC) Genomics. 15:153. DOI:10.1186/1471-2164-15-153.
Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice - (Peer Reviewed Journal)
Wang, X., Wang, Z., Pineros, M., Wang, Z., Wang, W., Li, C., Wu, Z., Kochian, L.V., Wu, P. 2014. Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice. Plant Cell and Environment. 37(5):1159-1170. DOI: 10.1111/pce.201437.issue-5/issuetoc.
The role of aluminum sensing and signaling in plant aluminum resistance     Reprint Icon - (Review Article)
Liu, J., Pineros, M., Kochian, L.V. 2014. The role of aluminum sensing and signaling in plant aluminum resistance. Journal of Integrative Plant Biology. 56(3):221-230. DOI: 10.1111/jipb.12162
Identification of a novel pathway involving a GATA transcription factor in yeast and possibly plant Zn uptake and homeostasis     Reprint Icon - (Peer Reviewed Journal)
Milner, M., Pence, N., Liu, J., Kochian, L.V. 2014. Identification of a novel pathway involving a GATA transcription factor in yeast and possibly plant Zn uptake and homeostasis. Journal of Integrative Plant Biology. 56(3):271-280. DOI: 10.1111/jipb.12169.
Association mapping provides insights into the origin and the fine structure of the sorghum aluminum tolerance locus, AltSB - (Peer Reviewed Journal)
Caniato, F.F., Hamlin, M.T., Guimaraes, C.T., Zhang, Z., Schaffert, R.E., Kochian, L.V., Magalhaes, J.V. 2014. Association mapping provides insights into the origin and the fine structure of the sorghum aluminum tolerance locus, AltSB. PLoS One. 9(1):e87438.
Physiological and molecular analysis of selected Kenyan maize lines for aluminum tolerance - (Peer Reviewed Journal)
Matonyei, T., Cheprot, R., Liu, J., Pineros, M., Shaff, J., Gudo, S., Were, B., Magalhaes, J., Kochian, L.V. 2014. Physiological and molecular analysis of selected Kenyan maize lines for aluminum tolerance. Plant Journal. 377:357-367.
Functional, structural and phylogenetic analysis of domains underlying the Al-sensitivity of the aluminium-activated malate/anion transporter, TaALMT1     Reprint Icon - (Peer Reviewed Journal)
Ligaba, A., Dreyer, I., Margaryan, A., Schneider, D.J., Kochian, L.V., Pineros, M. 2013. Functional, structural and phylogenetic analysis of domains underlying the Al-sensitivity of the aluminium-activated malate/anion transporter, TaALMT1. Plant Journal. 76(6):766-780. DOI: 10.1111/tpj.12332
Last Modified: 7/23/2016
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