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United States Department of Agriculture

Agricultural Research Service

Research Project: Genomic Analyses and Management of Agricultural and Industrial Microbial Genetic Resources and Associated Information

Location: Bacterial Foodborne Pathogens & Mycology Research Unit

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Taxonomic evaluation of Streptomyces hirsutus and related species using multi-locus sequence analysis - (Abstract Only)
Labeda, D.P., Rong, X., Huang, Y., Doroghazi, J.R., Ju, K., Metcalf, W.W. 2014. Taxonomic evaluation of Streptomyces hirsutus and related species using multi-locus sequence analysis [abstract]. International Congress of Bacteriology and Applied Microbiology.
Description of Kuraishia piskuri f.a., sp. nov., a new methanol assimilating yeast and transfer of phylogenetically related Candida species to the genera Kuraishia and Nakazawaea as new combinations - (Peer Reviewed Journal)
(30-Jul-14)
Genetic relatedness versus biological compatibility between Aspergillus fumigatus and related species - (Peer Reviewed Journal)
(29-Jul-14)
Discovery of novel phosphonate natural products and their biosynthetic pathways by large-scale genome mining - (Abstract Only)
Ju, K., Gao, J., Doroghazi, J., Li, S., Metzger, E., Fudala, J., Su, J., Zhang, J., Lee, J., Labeda, D.P. 2014. Discovery of novel phosphonate natural products and their biosynthetic pathways by large-scale genome mining [abstract]. Society for Industrial Microbiology.
Acute respiratory distress caused by Neosartorya udagawae - (Peer Reviewed Journal)
Farrell, J.J., Kaspar, D.M., Tenaja, D., Baman, S., O'Rourke, L.M., Lowery, K.A., Sampath, R., Bonomo, R.A., Peterson, S.W. 2014. Acute respiratory distress caused by Neosartorya udagawae. Medical Mycology. 6:1-5.
First report of mango malformation disease caused by Fusarium pseudocircinatum in Mexico - (Research Notes)
(11-Jul-14)
Fusarium euwallaceae, a novel species cultivated by a Euwallacea ambrosia beetle that threatens avocado production in Israel and California - (Abstract Only)
Aoki, T., Freeman, S., Sharon, M., Maymon, M., Mendel, Z., Eskalan, A., Eskalen, A., O'Donnell, K. 2014. Fusarium euwallaceae, a novel species cultivated by a Euwallacea ambrosia beetle that threatens avocado production in Israel and California [abstract]. Mycological Society of Japan.
Evolutionary history of Ascomyceteous Yeasts - (Abstract Only)
Haridas, S., Riley, R., Salamov, A., Kurtzman, C.P., Blackwell, M., Jeffries, T.W., Gregoriev, I. 2014. Evolutionary history of Ascomyceteous Yeasts [abstract]. Mycological Society of America.
Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi - (Review Article)
Robbertse, B., Schoch, C.L., Robert, V., Duong, V., Cardinali, G., Irinyi, L., Meyer, W., Kurtzman, C.P., Lodge, D., Nakasone, K., et al. 2014. Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi. Database: The Journal of Biological Databases and Curation. DOI: 10.1093/database/bau061.
Living on the edge: disease, population decline and conservation efforts of the Florida torreya (Torreya taxifolia)" - (Abstract Only)
Smith, J.A., Spector, T., Determann, R., Cruse-Sanders, J., Pruner, R., Friel, M., O'Donnell, K., Bente, J. 2014. Living on the edge: disease, population decline and conservation efforts of the Florida torreya (Torreya taxifolia)" [abstract]. Florida Native Plant Society.
Update on the status of NRRL - (Abstract Only)
Ward, T.J. 2014. Update on the status of NRRL [abstract]. USCCN.
Clinical, morphological, and molecular characterization of Penicillium canis, sp. nov., isolated from a dog with osteomyelitis - (Peer Reviewed Journal)
Langlois, D.K., Sutton, D.A., Swenson, C.L., Bailey, C.J., Wiederhold, N.P., Nelson, N.C., Thompson, E.H., Wickes, B.L., French, S., Fu, J., Vilar-Saavedra, P., Peterson, S.W. 2014. Clinical, morphological, and molecular characterization of Penicillium canis, sp. nov., isolated from a dog with osteomyelitis. Journal of Clinical Microbiology. 52(7):2447-2453.
On the reclassification of species assigned to Candida and other anamorphic ascomycetous yeast genera based on phylogenetic circumscription - (Review Article)
Daniel, H., Lachance, M., Kurtzman, C.P. 2014. On the reclassification of species assigned to Candida and other anamorphic ascomycetous yeast genera based on phylogenetic circumscription. Antonie Van Leeuwenhoek. 106(1):67-84.
(2289) Proposal to Conserve the Name Morchella Semilibera Against Phallus Crassipes, P. Gigas and P. Undosus (Ascomycota) - (Other)
Moreau, P., Bellanger, J., Clowez, P., Courtecuisse, R., Hansen, K., Knudsen, H., O'Donnell, K., Richard, F. 2014. (2289) Proposal to conserve the name Morchella semilibera against Phallus crassipes, P. gigas and P. undosus (Ascomycota). Taxon. 63(3):677-678.
Aspergillus pragensis sp. nov. discovered during molecular reidentification of clinical isolates belonging Aspergillus section Candidi - (Peer Reviewed Journal)
Hubka, V., Lyskova, P., Frisvad, J.C., Skorepova, M., Peterson, S.W., Skorepova, M., Kolarik, M. 2014. Aspergillus pragensis sp. nov. discovered during molecular reidentification of clinical isolates belonging Aspergillus section Candidi. Medical Mycology. 52(6):565-576.
How does the phylogenetic species concept correlate with biological characteristics of the pathogenic species in Aspergillus section Fumigati? - (Abstract Only)
Sugui, J.A., Figat, A., Kwon-Chung, K.J., Peterson, S.W., Mellado, E., Cuenca-Estrella, M. 2014. How does the phylogenetic species concept correlate with biological characteristics of the pathogenic species in Aspergillus section Fumigati? [abstract]. Advances Against Aspergillosis Conference.
Three new anascosporic genera of the Saccharomycotina: Danielozyma gen. nov., Deakozyma gen. nov. and Middelhovenomyces gen. nov. - (Peer Reviewed Journal)
Kurtzman, C.P., Robnett, C.J. 2014. Three new anascosporic genera of the Saccharomycotina: Danielozyma gen. nov., Deakozyma gen. nov. and Middelhovenomyces gen. nov. Antonie Van Leeuwenhoek. 105(5):933-942.
A preliminary assessment of the true morels (Morchella) in Newfoundland and Labrador - (Other)
O'Donnell, K. 2014. A preliminary assessment of the true morels (Morchella) in Newfoundland and Labrador. Omphalina. V(2):3-6.
Mel-36 – preliminary description of a new morel species - (Other)
Voitk, A., Burzynski, M., O'Donnell, K., Voitk, M., Marceau, A. 2014. Mel-36 – preliminary description of a new morel species. Omphalina. V(2):7-10.
Morel species Mel-19 – preliminary report - (Other)
Beug, M., O'Donnell, K. 2014. Morel species Mel-19 – preliminary report. Omphalina. V(2):14-15.
Streptomyces leeuwenhoekii sp. nov., the producer of chaxalactins and chaxamycins, forms a distinct branch in Streptomyces gene trees - (Peer Reviewed Journal)
Busarakam, K., Bull, A.T., Girard, G., Labeda, D.P., van Wezel, G.P., Goodfellow, M. 2014. Streptomyces leeuwenhoekii sp. nov., the producer of chaxalactins and chaxamycins, forms a distinct branch in Streptomyces gene trees. Antonie Van Leeuwenhoek. 105(5):849-861.
Taxonomic evaluation of Streptomyces albus and related species using multilocus sequence analysis and proposals to emend the description of Streptomyces albus and describe Streptomyces pathocidini sp. nov - (Peer Reviewed Journal)
Labeda, D.P., Doroghazi, J.R., Ju, K.-S., Metcalf, W.W. 2014. Taxonomic evaluation of Streptomyces albus and related species using multilocus sequence analysis and proposals to emend the description of Streptomyces albus and describe Streptomyces pathocidini sp. nov. International Journal of Systematic and Evolutionary Microbiology. 64(3):894-900.
Fusarium and other opportunistic hyaline fungi - (Book / Chapter)
(19-Nov-13)
Use of gene sequence analyses and genome comparisons for yeast systematics - (Review Article)
Kurtzman, C.P. 2014. Use of gene sequence analyses and genome comparisons for yeast systematics. International Journal of Systematic and Evolutionary Microbiology. 64(Pt.2):325-332.
Diversity and abundance of phosphonate biosynthetic genes in nature - (Peer Reviewed Journal)
Yu, X., Doroghazi, J.R., Janga, S., Zhang, J., Circello, B.T., Griffin, B.M., Labeda, D.P., Metcalf, W.W. 2013. Diversity and abundance of phosphonate biosynthetic genes in nature. Proceedings of the National Academy of Sciences. 110(51):20759-20764.
Description of Ambrosiozyma oregonensis sp. nov., and reassignment of Candida species of the Ambrosiozyma clade to Ambrosiozyma kashinagacola f.a., comb. nov., Ambrosiozyma llanquihuensis f.a., comb. nov., etc. - (Peer Reviewed Journal)
Kurtzman, C.P., Robnett, C.J. 2013. Description of Ambrosiozyma oregonensis sp. nov., and reassignment of Candida species of the Ambrosiozyma clade to Ambrosiozyma kashinagacola f.a., comb. nov., Ambrosiozyma llanquihuensis f.a., comb. nov., Ambrosiozyma maleeae f.a., comb. nov., Ambrosiozyma pseudovanderkliftii f.a., comb. nov., and Ambrosiozyma vanderkliftii f.a., comb. nov. International Journal of Systematic and Evolutionary Microbiology. 63(10):3877-3883.
Icy 2012 Highlights - (Other)
Abbas, C., Kurtzman, C.P., Liti, G. 2013. ICY 2012 Highlights. Yeast. 30(8):293-294.
Data management and database structure at the ARS Culture Collection - (Abstract Only)
Labeda, D.P. 2013. Data management and database structure at the ARS Culture Collection. Meeting Abstract.
The impact of culture collections on molecular identification, taxonomy, and solving real problems - (Abstract Only)
Geiser, D.M., Kang, S., Ward, T.J., O'Donnell, K., Robert, V., Crous, P.W. 2013. The impact of culture collections on molecular identification, taxonomy, and solving real problems. Meeting Abstract.
The ARS Culture Collection and Developments in Biotechnology - (Abstract Only)
Kurtzman, C.P. 2013. The ARS Culture Collection and Developments in Biotechnology [abstract]. U.S. Culture Collection Network.
Overview of the ARS Culture Collection - (Abstract Only)
Ward, T.J. 2013. Overview of the ARS Culture Collection. Meeting Abstract.
Culture Collections and Public Health Research - (Abstract Only)
Ward, T.J. 2013. Culture Collections and Public Health Research. Meeting Abstract.
Ambrosia beetle fungiculture - (Abstract Only)
O Donnell, K. 2013. Ambrosia beetle fungiculture [abstract]. Smithsonian Institute.
Last Modified: 8/29/2014
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