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United States Department of Agriculture

Agricultural Research Service

Research Project: Genomic and Metagenomic Approaches to Enhance Efficient and Sustainable Production of Beef Cattle

Location: Genetics, Breeding, & Animal Health

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Comparison of Bayesian models to estimate direct genomic values in multi-breed commercial beef cattle     Reprint Icon - (Peer Reviewed Journal)
Rolf, M.M., Garrick, D.J., Fountain, T., Ramey, H.R., Weaber, R.L., Decker, J.E., Pollak, E.J., Schnabel, R.D., Taylor, J.F. 2015. Comparison of Bayesian models to estimate direct genomic values in multi-breed commercial beef cattle. Genetics Selection Evolution. 47:23. DOI 10.1186/s12711-015-0106-8.
Evaluation of SNP in chromosomal regions impacting pregnancy status in cattle - (Peer Reviewed Journal)
(03-Jan-15)
Genomewide association study of lung lesions in cattle using sample pooling - (Peer Reviewed Journal)
Keele, J.W., Kuehn, L.A., McDaneld, T.G., Tait Jr., R.G., Jones, S., Smith, T.P., Shackelford, S.D., King, D.A., Wheeler, T.L., Lindholm-Perry, A.K., McNeel, A.K. 2015. Genomewide association study of lung lesions in cattle using sample pooling. Journal of Animal Science. 93(3):956-964. DOI: 10.2527/jas.2014-8492.
Multi-tissue omics analyses reveal molecular regulatory networks for puberty in composite beef cattle - (Peer Reviewed Journal)
Canovas, A., Reverter, A., DeAtley, K.L., Ashley, R.L., Colgrave, M.L., Fortes, M.R., Islas-Trejo, A., Lehnert, S.A., Porto-Neto, L.R., Rincon, G., Silver, G.A., Snelling, W.M., Medrano, J.F., Thomas, M.G. 2014. Multi-tissue omics analyses reveal molecular regulatory networks for puberty in composite beef cattle. PLoS One. 9(7):e102551. DOI: 10.1371/journal.pone.0102551.
Evaluation of anthelmintic resistance of intestinal parasitic nematodes in heifers in south central Nebraska - (Abstract Only)
Jones, S., Chase, C.C., Cortinas, R., Griffin, D., Kuehn, L.A., Shuck, K., Whitman, K., Tait Jr, R.G., Keele, J.W. 2014. Evaluation of anthelmintic resistance of intestinal parasitic nematodes in heifers in south central Nebraska [abstract]. Journal of Animal Science Supplement. 92(E-Supplement 2):462.
Filling the knowledge gap: Integrating quantitative genetics and genomics in graduate education and outreach - (Proceedings)
Lewis, R.M., Spangler, M.L., Lockee, B.B., Enns, R.M., Enns, K.J., Dekkers, J.C., Maltecca, C., Cassady, J.P., MacNeil, M.D., Gould, C.A., Boggs, D.L., Misztal, I., Pollak, E.J. 2014. Filling the knowledge gap: Integrating quantitative genetics and genomics in graduate education and outreach. In: Proceedings of the 10th World Congress on Genetics Applied to Livestock Production, August 17-22, 2014, Vancouver, BC, Canada. Paper No. 222. Available: https://asas.org/wcgalp-proceedings.
Genomewide association study of reproductive efficiency in female cattle - (Peer Reviewed Journal)
McDaneld, T.G., Kuehn, L.A., Thomas, M.G., Snelling, W.M., Smith, T.P.L., Pollak, E.J., Cole, J.B., Keele, J.W. 2014. Genomewide association study of reproductive efficiency in female cattle. Journal of Animal Science. 92(5):1945-1957.
Utilization of sequence on relatives to improve analysis of individuals' low-coverage NGS data - (Abstract Only)
(22-Jan-14)
Deletion on chromosome 5 associated with decreased reproductive efficiency in female cattle - (Peer Reviewed Journal)
McDaneld, T.G., Kuehn, L.A., Thomas, M.G., Pollak, E.J., Keele, J.W. 2014. Deletion on chromosome 5 associated with decreased reproductive efficiency in female cattle. Journal of Animal Science. 92:1378-1384.
Microbiome characterization using SMRT sequencing on 16S rRNA genes across a range of amplicon sizes and variable region content - (Abstract Only)
(04-Dec-13)
Characterization of microbiomes related to respiratory disease in cattle - (Abstract Only)
Smith, T.P., Kim, M.S., Myer, P.R., McDaneld, T.G., Kuehn, L.A., Clawson, M.L., Harhay, D.M., Harhay, G.P. 2014. Characterization of microbiomes related to respiratory disease in cattle [Abstract]. Proceedings of the Plant and Animal Genome XXII Conference, January 11-15, 2014, San Diego, CA. Poster W759.
Deep sequencing of immune repertoires during bovine development and in response to respiratory pathogen challenge - (Abstract Only)
Smith, T.P.L., and Larsen, P.A. 2013. Deep sequencing of immune repertoires during bovine development and in response to respiratory pathogen challenge [Abstract]. Advances in Genome Biology and Technology Conference, February 20-23, 2013, Marco Island, FL. Page 126.
Complete genome assemblies and methylome characterization in infectious diseases - (Abstract Only)
Smith, T.P. 2013. Complete genome assemblies and methylome characterization in infectious diseases [Abstract]. Plant & Animal Genome XXI Conference, January 12-16, 2013, San Diego, CA. Paper No. W483.
Last Modified: 6/3/2015
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