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United States Department of Agriculture

Agricultural Research Service

Related Topics

Research Project: Employing Genomics, Epigenetics, and Immunogenetics to Control Diseases Induced by Avian Tumor Viruses

Location: Avian Disease and Oncology Laboratory

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Marek’s Disease Virus Influences the Core Gut Microbiome of the Chicken During the Early and Late Phases of Viral Replication - (Peer Reviewed Journal)
(19-Jul-14)
Marek’s disease virus and chicken host genome interactions - (Peer Reviewed Journal)
(18-Jun-14)
The cellular and molecular etiology of the craniofacial defects in the avian ciliopathic mutant talpid2 - (Peer Reviewed Journal)
(28-May-14)
Systematic Differences in the Response of Genetic Variation to Pedigree and Genome Based Selection Methods - (Peer Reviewed Journal)
(22-Apr-14)
gga-miR-375 plays a key role in tumorigenesis post subgroup J Avian Leukosis Virus infection - (Peer Reviewed Journal)
Li, H., Shang, H., Shu, D., Zhang, H., Ji, J., Sun, B., Li, H., Xie, Q. 2014. gga-miR-375 plays a key role in tumorigenesis post subgroup J Avian Leukosis Virus infection. PLoS One. 9(4):e90878. Available: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0090878.
Host genetic resistance to Marek’s disease sustains protective efficacy of herpesvirus of turkey in both experimental and commercial lines of chickens - (Peer Reviewed Journal)
Chang, S., Xie, Q., Dunn, J.R., Ernst, C.W., Song, J., Zhang, H. 2014. Host genetic resistance to Marek’s disease sustains protective efficacy of herpesvirus of turkey in both experimental and commercial lines of chickens. Vaccine. 32(16):1820-1827. Available: http://www.sciencedirect.com/science/article/pii/S0264410X14001558.
Preliminary analysis of microRNA transcriptome altered by vaccine and Marek’s disease virus in chickens - (Abstract Only)
Zhang, H., Xie, Q., Chang, S., Ernst, C.W., Song, J. 2014. Preliminary Analysis of MicroRNA Transcriptome Altered by Vaccine and Marek’s Disease Virus in Chickens. Plant and Animal Genome Conference. Paper No. 9952. Available: https://pag.confex.com/pag/xxii/webprogram/Paper9952.html.
Differential expression of Toll-like receptor pathway genes in chicken embryo fibroblasts from chickens resistant and susceptible to Marek’s disease - (Peer Reviewed Journal)
Haunshi, S., Cheng, H.H. 2014. Differential expression of Toll-like receptor pathway genes in chicken embryo fibroblasts from chickens resistant and susceptible to Marek’s disease. Poultry Science. 93:550-555. Available: http://dx.doi.org/10.3382/ps.2013-03597.
The Genetic Architecture of Genetic Resistance to Marek's Disease - (Proceedings)
Cheng, H.H., Perumbakkam, S., Black Pyrkosz, A.A., Subramaniam, S., Preeyanon, L., Dunn, J.R., Van Sambeek, F., Ansah, G., Muir, W.M. 2013. The Genetic Architecture of Genetic Resistance to Marek's Disease. In: Proceedings of the 8th European Symposium on Poultry Genetics, September 25-27, 2013, Venice, Italy. p. 12-13.
Transcriptional profiling of Meq-dependent genes in Marek’s disease resistant and susceptible inbred chicken lines - (Peer Reviewed Journal)
Subramaniam, S., Preeyanon, L., Cheng, H.H. 2013. Transcriptional profiling of Meq-dependent genes in Marek’s disease resistant and susceptible inbred chicken lines. PLoS One. 8(10):e78171. Available: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0078171.
Integrated analyses of genome-wide DNA occupancy and expression profiling identify key genes and pathways involved in cellular transformation by the Marek's disease virus oncoprotein Meq - (Peer Reviewed Journal)
Subramaniam, S., Johnston, J., Preeyanon, L., Brown, C., Kung, H., Cheng, H.H. 2013. Integrated analyses of genome-wide DNA occupancy and expression profiling identify key genes and pathways involved in cellular transformation by the Marek's disease virus oncoprotein Meq. Journal of Virology. 87(16):9016-9029. Available at: http://jvi.asm.org/content/87/16/9016.full.
Visualization of Marek’s disease virus in vitro using enhanced green fluorescent protein fused with US10 - (Peer Reviewed Journal)
Mao, W., Kim, T., Cheng, H.H. 2013. Visualization of Marek’s disease virus in vitro using enhanced green fluorescent protein fused with US10. Virus Genes. 47(1):181-183. Available: http://link.springer.com/journal/11262/47/1/page/2.
Dnmt Gene Expression and Methylome in Marek’s Disease Resistant and Susceptible Chickens Prior to and Following Infection by Mdv - (Peer Reviewed Journal)
Tian, F., Zhan, F., Vanderkraats, N.D., Hiken, J.F., Edwards, J.R., Zhang, H., Zhao, K., Song, J. 2013. DNMT gene expression and methylome in Marek’s disease resistant and susceptible chickens prior to and following infection by MDV. Epigenetics. 8(4):431-444.
Does resistance to Marek’s disease select for specific gut microflora that play a role in influencing the host immune response - (Abstract Only)
Sudeep, P., Hunt, H.D., Cheng, H.H. 2013. Does resistance to Marek’s disease select for specific gut microflora that play a role in influencing the host immune response. Meeting Abstract. Keystone Symposia Conference, The Gut Microbiome: The Effector/Regulator Immune Network, February 10-15, 2013, Taos, New Mexico.
Reproducible Bioinformatics Research for Biologists - (Book / Chapter)
(09-Feb-13)
DNA methylation down-regulates EGFR expression in chicken - (Peer Reviewed Journal)
Luo, J., Chang, S., Zhang, H., Li, B., Song, J. 2013. DNA methylation down-regulates EGFR expression in chicken. Avian Diseases. 57(2):366-371.
Identification of direct gene targets that the MDV oncoprotein Meq regulates via ChIP and expression analyses - (Abstract Only)
Subramaniam, S., Preeyanon, L., C. Titus, B., Cheng, H.H. 2013. Identification of direct gene targets that the MDV oncoprotein Meq regulates via ChIP and expression analyses [abstract]. Plant and Animal Genome XXI Conference, January 12-16, 2013, San Diego, California. A-W638. Available: https://pag.confex.com/pag/xxi/webprogram/Paper5456.html.
Genome-wide copy number variant analysis in inbred chickens lines with different susceptibility to Marek's disease - (Abstract Only)
Luo, J., Yu, Y., Mitra, A., Zhang, H., Liu, G., Song, J. 2013. Genome-wide copy number variant analysis in inbred chickens lines with different susceptibility to Marek's disease [abstract]. Plant and Animal Genome XXI Conference, January 12-16, 2013, San Diego, California. A-P0649. Avaliable: https://pag.confex.com/pag/xxi/webprogram/Paper5185.html.
Identification of specific long noncoding RNA profiles in chicken with different susceptibility to Marek's disease - (Abstract Only)
Luo, J., Zhang, H., Zhao, K., Song, J. 2013. Identification of specific long noncoding RNA profiles in chicken with different susceptibility to Marek's disease [abstract]. Plant and Animal Genome XXI Conference, January 12-16, San Diego, California. A-P0651. Available:https://pag.confex.com/pag/xxi/webprogram/Paper5186.html.
Marek's Disease Virus Infection Induces Widespread Differential Chromatin Marks in Inbred Chicken Lines - (Abstract Only)
Mitra, A., Luo, J., Zhang, H., Zhao, K., Song, J. 2013. Marek's Disease Virus Infection Induces Widespread Differential Chromatin Marks in Inbred Chicken Lines [abstract]. Plant and Animal Genome XXI Conference, January 12-16, 2013, San Diego, California. A-P0650. Available:https://pag.confex.com/pag/xxi/webprogram/Paper5688.html.
Host Genetics and Vaccine Efficacy: Global gene expression differentiation induced by vaccine and MDV in MD resistant and susceptible chickens based on Next-Gen RNA-Seq reads - (Abstract Only)
Zhang, H., Chang, S., Xie, Q., Song, J., Ernst, C. 2013. Host Genetics and Vaccine Efficacy: Global gene expression differentiation induced by vaccine and MDV in MD resistant and susceptible chickens based on Next-Gen RNA-Seq reads [abstract]. Plant and Animal Genome XXI Conference, January 12-16, 2013, San Diego, California. A-W640. Available: https://pag.confex.com/pag/xxi/webprogram/Paper5459.html.
Last Modified: 7/28/2014
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