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United States Department of Agriculture

Agricultural Research Service

Research Project: Using Bioinformatic Tools to Investigate the Basis of Resistance/tolerance in Cotton Species to Cotton Leaf Virus (Clcuv)

Location: Genomics and Bioinformatics Research Unit

Project Number: 6066-21310-004-16
Project Type: Specific Cooperative Agreement

Start Date: Sep 01, 2012
End Date: Sep 30, 2015

Objective:
The objective of this project is to utilize computational biology and comparative genomics approaches to explore genes/alleles involved in resistance/susceptibility of cotton species/cultivars to cotton leaf curl virus (CLCuV). The project will leverage the complementary strengths of the USDA ARS Genomics and Bioinformatics Research Unit (GBRU) and Mississippi State University’s Institute for Genomics, Biocomputing & Biotechnology (IGBB).

Approach:
An Biocomputing & Biotechnology (IGBB) postdoctoral associate will use data mining and in silico comparative biomolecule approaches to identify and characterize genes and/or gene regions involved in cotton leaf curl virus (CLCuV) resistance/susceptibility. Data from a wide array of sources will be analyzed and new sequence, molecular mapping, and phenotypic information generated at the Genomics and Bioinformatics Research Unit (GBRU), the IGBB, and elsewhere will be integrated into the computational analyses as it becomes available. The postdoctoral associate will work closely with both GBRU and IGBB research groups and their directors. The postdoctoral associate will utilize Mississippi State University’s supercomputing facility (i.e., the High Performance Computing Collaboratory) to conduct computationally intensive analyses. All of these activities will be considered true collaborations and thus, by definition, each party will be considered to have provided a true intellectual contribution consistent with authorship.

Last Modified: 11/28/2014
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