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United States Department of Agriculture

Agricultural Research Service

Research Project: Characterization, Etiology, and Disease Management for Vegetable Crops

Location: Vegetable Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Host cell compensation for genomic deterioration of an intracellular bacterial symbiont - (Peer Reviewed Journal)
(26-Aug-15)
Estimation of the whitefly Bemisia tabaci genome size based on k-mer and flow cytometry analyses     Reprint Icon - (Peer Reviewed Journal)
Wenbo, C., Hasegawa, D., Arumuganathan, K., Simmons, A.M., Wintermantel, W.M., Fei, Z., Ling, K. 2015. Estimation of the whitefly Bemisia tabaci genome size based on k-mer and flow cytometry analyses. Insects, 6, 704-715.
Transcriptome analysis to identify differentially expressed genes associated with ty-5 against tomato yellow leaf curl virus and Sw-7 against tomato spotted wilt virus in tomato - (Abstract Only)
(16-Jul-15)
Complete genome sequence of an emerging melon necrotic spot virus isolate infecting greenhouse cucumber in North America - (Peer Reviewed Journal)
(15-Jun-15)
The First complete genome sequence of an emerging cucumber green mottle mosaic virus isolate in North America - (Peer Reviewed Journal)
(03-Apr-15)
Complete genome sequence of a novel genotype of squash mosaic virus     Reprint Icon - (Peer Reviewed Journal)
Li, R., Gao, S., Berendsen, S., Fei, Z., Ling, K. 2015. Complete genome sequence of a novel genotype of squash mosaic virus. Genome Announcements. 3(1):e01583-14.
Evaluation of disinfectants to prevent mechanical transmission of viruses and a viroid in greenhouse tomato production     Reprint Icon - (Peer Reviewed Journal)
Li, R., Baysal-Gurel, F., Abdo, Z., Miller, S., Ling, K. 2015. Evaluation of disinfectants to prevent mechanical transmission of viruses and a viroid in greenhouse tomato production. Virology Journal. 12:5.
First report of tomato chlorotic spot virus infecting tomatoes in Ohio - (Peer Reviewed Journal)
Baysal-Gurel, F., Li, R., Ling, K., Miller, S. 2015. First report of tomato chlorotic spot virus infecting tomatoes in Ohio. Plant Disease. 99:163.
Complete genome sequence of an emerging genotype of tobacco streak virus in the U.S.     Reprint Icon - (Peer Reviewed Journal)
Padmanabhan, C., Gao, S., Li, R., Zhang, S., Fei, Z., Ling, K. 2014. Complete genome sequence of an emerging genotype of tobacco streak virus in the U.S. Genome Announcements. 2(6):e01138-14.
Research toward integrate management of the emerging viroid disease on tomato through seed health test, disinfectant application and disease resistance - (Abstract Only)
Ling, K., Li, R. 2014. Research toward integrate management of the emerging viroid disease on tomato through seed health test, disinfectant application and disease resistance. 29th Annual Tomato Disease Workshop. p 17.
Using small RNA (sRNA) deep sequencing to understand global virus distribution in plants - (Abstract Only)
(14-Aug-14)
Screening tomato germplasm for resistance to potato spindle tuber viroid - (Abstract Only)
Li, R., Ling, K. 2014. Screening tomato germplasm for resistance to potato spindle tuber viroid. Meeting Abstract. September 14-17, 2014. Page 8.
Improvement of grafted watermelon transplant survival as a result of size and starch increases over time caused by rootstock fatty alcohol treatment Part II - (Peer Reviewed Journal)
(02-Jun-14)
Discovery of a new genotype of Squash mosaic virus through deep sequencing of small RNAs and development of a qRT-PCR for broad spectrum detection - (Abstract Only)
Li, R., Gao, S., Berendsen, S., Fei, Z., Ling, K. 2014. Discovery of a new genotype of Squash mosaic virus through deep sequencing of small RNAs and development of a qRT-PCR for broad spectrum detection. Meeting Abstract. 104(S3):68.
Using genotyping-by-sequencing to identify SNPs linked to the Zucchini yellow mosaic virus resistance trait in bottle gourd and development of CAPS markers useful for marker assisted selection - (Abstract Only)
Wilder, A.J., Fei, Z., Levi, A., Ling, K. 2014. Using genotyping-by-sequencing to identify SNPs linked to the Zucchini yellow mosaic virus resistance trait in bottle gourd and development of CAPS markers useful for marker assisted selection. Cucurbitaceae 2014 Proceedings. p 94-97.
First report of bacterial leaf blight on mustard greens (Brassica juncea) caused by pseudomonas cannabina pv. alisalensis in Mississippi     Reprint Icon - (Peer Reviewed Journal)
Wechter, W.P., Keinath, A.P., Smith, J.P., Farnham, M.W., Bull, C.T., Schofield, D.A. 2014. First report of bacterial leaf blight on mustard greens (Brassica juncea) caused by pseudomonas cannabina pv. alisalensis in Mississippi. Plant Disease. 98:1151.
Development of reverse transcription loop-mediated isothermal amplification assay for rapid detection of an emerging potyvirus: tomato necrotic stunt virus - (Peer Reviewed Journal)
Li, R., Ling, K. 2014. Development of reverse transcription loop-mediated isothermal amplification assay for rapid detection of an emerging potyvirus: tomato necrotic stunt virus. Journal of Virological Methods. 200:35-40.
First report of cucumber green mottle mosaic virus infecting greenhouse cucumber in Canada - (Peer Reviewed Journal)
Ling, K., Li, R., Zhang, W. 2014. First report of cucumber green mottle mosaic virus infecting greenhouse cucumber in Canada. Plant Disease. 98(5):701.
First report of potato spindle tuber viroid naturally infecting field tomatoes in the Dominican Republic - (Peer Reviewed Journal)
Ling, K., Li, R., Groth-Helms, D., Assis-Filho, F.M. 2014. First report of potato spindle tuber viroid naturally infecting field tomatoes in the Dominican Republic. Plant Disease. 98(5):701.
Complete genome sequence of a new tobamovirus naturally infecting tomatoes in Mexico     Reprint Icon - (Peer Reviewed Journal)
Li, R., Gao, S., Fei, Z., Ling, K. 2013. Complete genome sequence of a new tobamovirus naturally infecting tomatoes in Mexico. Genome Announcements. 1(5):e00794-13.
Molecular and biological properties of tomato necrotic stunt virus and development of a sensitive real-time RT-PCR assay - (Peer Reviewed Journal)
Li, R., Fei, Z., Ling, K. 2014. Molecular and biological properties of tomato necrotic stunt virus and development of a sensitive real-time RT-PCR assay. Archives of Virology. 159(2):353-358.
Characterization and detection of emerging viroids in North American greenhouse tomatoes - (Abstract Only)
Ling, K., Li, R., Sombat, S. 2013. Characterization and detection of emerging viroids in North American greenhouse tomatoes. International workshop on viroids and satellite RNAs (IWVds). p. 5.
Global virus survey in tomato using small RNA deep sequencing technology - (Abstract Only)
Ling, K., Li, R., Fei, Z. 2013. Global virus survey in tomato using small RNA deep sequencing technology. Acta phytopathologica sinica 43 (suppl.). 281-282.
Pepino mosaic virus genotype shift in North America and rapid genotype identification using loop-mediated isothermal amplification - (Abstract Only)
Ling, K., Li, R., Bledsoe, M. 2013. Pepino mosaic virus genotype shift in North America and rapid genotype identification using loop-mediated isothermal amplification. Acta phytopathologica sinica 43 (suppl.). p. 402.
Molecular characterization and detection of Mexican papita viroid - (Abstract Only)
Li, R., Ling, K. 2013. Molecular characterization and detection of Mexican papita viroid. Phytopathology. 103: S2, 80.
Developing hygiene protocols against mechanically transmitted pathogens in greenhouse tomato production systems - (Abstract Only)
Baysal-Gurel, F., Li, R., Ling, K., Kurowski, C., Miller, S.A. 2013. Developing hygiene protocols against mechanically transmitted pathogens in greenhouse tomato production systems. The 4th International Symposium on Tomato Diseases and 28th U.S. Annual Tomato Disease Workshop. p 29.
Evaluation of disinfectants to control mechanical transmission of tomato viruses and viroids in greenhouse tomatoes - (Abstract Only)
Li, R., Baysal-Gurel, F., Kurowski, C., Miller, S.A., Ling, K. 2013. Evaluation of disinfectants to control mechanical transmission of tomato viruses and viroids in greenhouse tomatoes. The 4th International Symposium on Tomato Diseases and 28th U.S. Annual Tomato Disease Workshop. p 30.
Understanding the global distribution of tomato viruses and viroids using next-generation sequencing technology - (Abstract Only)
Ling, K., Li, R., Gao, S., Fei, Z. 2013. Understanding the global distribution of tomato viruses and viroids using next-generation sequencing technology. The 4th International Symposium on Tomato Diseases and 28th U.S. Annual Tomato Disease Workshop. p 24.
Pepino mosaic virus genotype shift in North America and development of a loop-mediated isothermal amplification for rapid genotype identification     Reprint Icon - (Peer Reviewed Journal)
Ling, K., Li, R., Bledsoe, M. 2013. Pepino mosaic virus genotype shift in North America and development of a loop-mediated isothermal amplification for rapid genotype identification. Virology Journal. 10:117.
Development and field evaluation of multiple virus-resistant bottle gourd (Lagenaria siceraria) - (Peer Reviewed Journal)
Ling, K., Levi, A., Adkins, S.T., Kousik, C.S., Miller, G., Hassell, R.L., Keinath, A.P. 2013. Development and field evaluation of multiple virus-resistant bottle gourd (Lagenaria siceraria). Plant Disease. 97:1057-1062.
Identification of Potato spindle tuber viroid naturally infecting greenhouse tomatoes in North Carolina and its potential in seed transmission - (Proceedings)
Ling, K., Li, R., Panthee, D.R., Gardner, R.G. 2012. Identification of Potato spindle tuber viroid naturally infecting greenhouse tomatoes in North Carolina and its potential in seed transmission. Tomato Disease Workshop. p27.
Molecular and biological characterization of Mexican papita viroid - (Proceedings)
Li, R., Ling, K. 2012. Molecular and biological characterization of Mexican papita viroid. Tomato Disease Workshop. p28.
Sensitivity of mechanically transmitted pathogens to different disinfectants - (Proceedings)
Baysal-Gurel, F., Li, R., Ling, K., Henderson, D.R., Kurowski, C., Miller, S.A. 2012. Sensitivity of mechanically transmitted pathogens to different disinfectants. Tomato Disease Workshop. p29.
First report of potato spindle tuber viroid naturally infecting greenhouse tomatoes in North Carolina - (Peer Reviewed Journal)
Ling, K., Li, R., Panthee, D.R., Gardner, R.G. 2013. First report of potato spindle tuber viroid naturally infecting greenhouse tomatoes in North Carolina. Plant Disease. 97:148.
Three improved Citrullus lanatus var. citroides lines USVL246-FR2, USVL252-FR2, and USVL335-FR2, with resistance to Fusarium oxysporum f. sp. niveum race 2 - (Abstract Only)
Wechter, W.P., Kousik, C.S., Mcmillan, M.L., Farnham, M.W., Levi, A. 2012. Three improved Citrullus lanatus var. citroides lines USVL246-FR2, USVL252-FR2, and USVL335-FR2, with resistance to Fusarium oxysporum f. sp. niveum race 2. Phytopathology. 102:S4.133.
Last Modified: 9/2/2015
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