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United States Department of Agriculture

Agricultural Research Service

Related Topics

Research Project: Development of Genomic Tools to Study Ruminant Resistance to Gastrointestinal Nematodes

Location: Animal Genomics and Improvement Laboratory

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Splice variants and regulatory networks associated with host resistance to the intestinal worm Cooperia oncophora in cattle - (Peer Reviewed Journal)
Li, R.W., Wu, S., Li, C., Li, W., Schroeder, S.G. 2015. Splice variants and regulatory networks associated with host resistance to the intestinal worm Cooperia oncophora in cattle. Veterinary Parasitology. DOI:10.1016/j.vetpar.2015.05.010.
Analysis of the protective immune response following intramuscular vaccination of calves against the intestinal parasite Cooperia oncophora - (Peer Reviewed Journal)
Van Meulder, F., Ratman, D., Van Coppernolle, S., Borloo, J., Li, R.W., Chiers, K., Van Den Broeck, W., Claerebout, E., Geldhof, P. 2015. Analysis of the protective immune response following intramuscular vaccination of calves against the intestinal parasite Cooperia oncophora. International Journal for Parasitology. pii:S0020-7519(15)00112-5. DOI: 10.1016/j.ijpara.2015.03.007.
Genome-wide scan of gastrointestinal nematode resistance in closed Angus population selected for minimized influence of MHC - (Peer Reviewed Journal)
Benavides, M., Sonstegard, T.S., Kemp, S., Mugambi, J.M., Gibson, J., Baker, R., Hanottte, O., Marshall, K., Van Tassell, C.P. 2015. Genome-wide scan of gastrointestinal nematode resistance in closed Angus population selected for minimized influence of MHC. PLoS One. doi:10.1371/journal.pone.0122797.eCollection2015.
Red Maasai x Dorper resistance to gastrointestestinal parasite infections associated to a panel of SNPs - (Peer Reviewed Journal)
Benavides, M., Sonstegard, T.S., Kemp, S., Mugambi, J., Gibson, J., Baker, R., Van Tassell, C.P. 2015. Red Maasai x Dorper resistance to gastrointestestinal parasite infections associated to a panel of SNPs. PLoS One. 10(4):e0122797.
Genome-wide scan of gastrointestinal nematode resistance in closed Angus population selected for minimized influence of MHC - (Peer Reviewed Journal)
Kim, E., Sonstegard, T.S., Vinicius Da Silva, M., Gasbarre, L.C., Van Tassell, C.P. 2015. Genome-wide scan of gastrointestinal nematode resistance in closed Angus population selected for minimized influence of MHC. PLoS One. 10(3):e0119380.
A previously uncharacterized, nonphotosynthetic member of the chromatiaceae is the primary CO2-fixing constituent in a self-regenerating biocathode - (Peer Reviewed Journal)
Wang, Z., Leary, D.H., Malanoski, A., Li, R.W., Hervey, W.J., Eddie, B., Vora, G.J., Tender, L.M., Lin, B.C., Strycharz-Glaven, S.M. 2014. A previously uncharacterized, nonphotosynthetic member of the chromatiaceae is the primary CO2-fixing constituent in a self-regenerating biocathode. Applied and Environmental Microbiology. 81:699–712. DOI:10.1128/AEM.02947-14.
Metagenomic insights into RDX-degrading potential of the ovine rumen microbiome - (Peer Reviewed Journal)
Li, R.W., Giarrizzo, G., Wu, S., Li, W., Duringer, J.M., Craig, M.A. 2014. Metagenomic insights into RDX-degrading potential of the ovine rumen microbiome. PLoS One. 9(11):e110505. DOI:10.1371/journal.pone.0110505.
Biomolecular and metagenomic analyses of biofouling communities - (Proceedings)
Leavy, D.H., hervey, W.J., Hamdan, L.J., Lebedev, N., Wang, Z., Deschamps, J.R., 1 Kusterbeck, A., Li, R.W., Vora, G.J. 2014. Biomolecular and metagenomic analyses of skip hull biofouling communities. In: Annual Naval Research Laboratory Review 2014, pp. 130-133.
Molecular networks associated with host resistance to gastrointestional nematodes in cattle - (Abstract Only)
(09-Jun-13)
Identification of blaOXA-51, blaOXA-58, blaDIM-1 and blaVIM carbapenemase genes in hospital enterobacteriaceae isolates from Sierra Leone - (Peer Reviewed Journal)
Leski, T., Bangura, U., Jimmy, D.H., Ansumana, R., Lizewski, S.E., Li, R.W., Stenger, D.A., Taitt, C.R., Vora, G. 2013. Identification of blaOXA-51, blaOXA-58, blaDIM-1 and blaVIM carbapenemase genes in hospital enterobacteriaceae isolates from Sierra Leone. Journal of Clinical Microbiology. 51:2435-2438.
Identification of single nucleotide polymorphisms (SNPs)associated to Red Maasai x Dorper resistance to gastrointestinal parasite infections - (Abstract Only)
Benavides, M., Sonstegard, T.S., Kemp, S., Mugambi, J., Gibson, J., Baker, R., Van Tassell, C.P. 2013. Identification of single nucleotide polymorphisms (SNPs)associated to Red Maasai x Dorper resistance to gastrointestinal parasite infections. BARC Poster Day. BARC {oster Day 2013 Abstract #3.
Granule-exocytosis of granulysin and granzyme B as a potential key mechanism in vaccine-induced immunity in cattle against the nematode ostertagia ostertagi - (Peer Reviewed Journal)
Van, M., Van, C., Borloo, J., Rinaldi, M., Li, R.W., Chiers, K., Van Den Broeck, W., Vercruysse, J., Claerebout, E., Geldhof, P. 2013. Granule-exocytosis of granulysin and granzyme B as a potential key mechanism in vaccine-induced immunity in cattle against the nematode ostertagia ostertagi. Infection and Immunity. 81(15):1798-1809.
Recent progresses in metagenomics - (Abstract Only)
(26-Jan-13)
Metagenomic sequences of host associated gut microbiome in response to helminth infections. - (Other)
Li, R.W. 2012. Metagenomic sequences of host associated gut microbiome in response to helminth infections.. Metagenomics Analysis Server, MG-RAST. 4474250.3.
Assembled sequence contigs by SOAPdenova and Volvet algorithms from metagenomic short reads of a new bacterial isolate of gut origin - (Other)
Li, R.W. 2012. Assembled sequence contigs by SOAPdenova and Volvet algorithms from metagenomic short reads of a new bacterial isolate of gut origin. Metagenomics Analysis Server, MG-RAST. 4471171.3.
RNA sequences of the bovine epithelial transcriptome - (Other)
Li, R.W., Li, C. 2012. RNA sequences of the bovine epithelial transcriptome. National Center for Biotechnology Information (NCBI). SRX130570.
The transcriptomic profiles of Giardia duodenalis infected calves - (Other)
Li, R.W., Dreesen, L., Rinaldi, M., Claerbout, E., Geldhof, P. 2012. The transcriptomic profiles of Giardia duodenalis infected calves. NIH Gene Expression Omnibus (GEO) Database. GSE35920.
Whole genome shotgun metagenomic sequences from the proximal colon microbiota in response to helminth parasites - (Other)
Li, R.W., Wu, S., Li, W., Hill, D.C., Urban Jr, J.F. 2012. Whole genome shotgun metagenomic sequences from the proximal colon microbiota in response to helminth parasites . National Center for Biotechnology Information (NCBI). SRX065855.
Whole genome shotgun sequences for a novel Salmonella strain - (Other)
Li, R.W. 2012. Whole genome shotgun sequences for a novel Salmonella strain. Metagenomics Analysis Server, MG-RAST. 4469966.3.
Sequences from the hypervariable V3-V5 regions of the 16S rRNA gene amplified from the porcine proximal colon - (Other)
Li, R.W., Wu, S., Li, W., Hill, D.C., Urban Jr, J.F. 2012. Sequences from the hypervariable V3-V5 regions of the 16S rRNA gene amplified from the porcine proximal colon . National Center for Biotechnology Information (NCBI). SRX065852.
Comparative analyses of transcriptomic profiles of the bovine small intestine in response to both a primary infection and a drug-attenuated reinfection - (Other)
Li, R.W., Li, C., Gasbarre, L.C. 2012. Comparative analyses of transcriptomic profiles of the bovine small intestine in response to both a primary infection and a drug-attenuated reinfection . NIH Gene Expression Omnibus (GEO) Database. GSE24402.
Regulatory networks and pathways in the bovine small intestine during Cooperia oncophora infection - (Other)
Li, R.W., Gasbarre, L.C. 2012. Regulatory networks and pathways in the bovine small intestine during Cooperia oncophora infection. NIH Gene Expression Omnibus (GEO) Database. 39:813-824.
Metagenomic sequences of the bovine abomasal microbiota of immune cattle in response to parasitic nematode Ostertagia ostertagi - (Other)
Li, R.W. 2012. Metagenomic sequences of the bovine abomasal microbiota of immune cattle in response to parasitic nematode Ostertagia ostertagi. National Center for Biotechnology Information (NCBI). 6(9):e24417. doi:10.1371/journal.pone.0024417.
Complement activation in the development of protective immunity against Ostertagia ostertagi infections in cattle - (Other)
Li, R.W., Hou, Y.L., Li, C., Gasbarree, L.C. 2012. Complement activation in the development of protective immunity against Ostertagia ostertagi infections in cattle. NIH Gene Expression Omnibus (GEO) Database. 190:1-11.2012.
Gene expression profiling of a temperature-sensitive strain of Neospora caninum - (Other)
Li, R.W. 2012. Gene expression profiling of a temperature-sensitive strain of Neospora caninum. National Center for Biotechnology Information (NCBI). 129:346-354.
Effects of stress on endocrine and metabolic processes and redirection: Crosstalk between subcellular compartments - (Peer Reviewed Journal)
Elsasser, T.H., Kahl, S., Capuco, A.V., Schmidt, W.F. 2012. Effects of stress on endocrine and metabolic processes and redirection: Crosstalk between subcellular compartments. Domestic Animal Endocrinology. 43(2):132-145.
Identification of single nucleotide polymorphisms (SNPs) associated to Red Maasai x Dorper resistance to gastrointestinal parasite infections - (Abstract Only)
(26-Mar-12)
Last Modified: 8/4/2015
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