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United States Department of Agriculture

Agricultural Research Service

Research Project: MODIFICATION OF SOYBEAN SEED COMPOSITION FOR FOOD, FEED, AND OTHER INDUSTRIAL USES Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Symbiosomes: temporary moonlighting organelles     Reprint Icon - (Review Article)
Emerich, D.W., Krishnan, H.B. 2014. Symbiosomes: temporary moonlighting organelles. Biochemical Journal. 460:1-11.
Initial description of the developing soybean seed protein-Lys-Ne-acetylome     Reprint Icon - (Peer Reviewed Journal)
Smith-Hammond, C., Swatek, K.N., Johnston, M.L., Thelen, J.J., Miernyk, J.A. 2014. Initial description of the developing soybean seed protein-Lys-Ne-acetylome. Journal of Proteomics. 96:56-66.
A nopA deletion mutant of Sinorhizobium fredii USDA257, a soybean symbiont, is impaired in nodulation     Reprint Icon - (Peer Reviewed Journal)
Kim, W., Krishnan, H.B. 2013. A nopA deletion mutant of Sinorhizobium fredii USDA257, a soybean symbiont, is impaired in nodulation. Current Microbiology. 68:239-246.
Circles within circles: crosstalk between protein Ser/Thr/Tyr-phosphorylation and Met oxidation     Reprint Icon - (Peer Reviewed Journal)
Rao, S.R., Xu, D., Thelen, J.J., Miernyk, J.A. 2013. Circles within circles: crosstalk between protein Ser/Thr/Tyr-phosphorylation and Met oxidation. BMC Bioinformatics. 14:S14.
Identification of an abundant 56 kDa protein implicated in food allergy as granule-bound starch synthase - (Peer Reviewed Journal)
Krishnan, H.B., Chen, M. 2013. Identification of an abundant 56 kDa protein implicated in food allergy as granule-bound starch synthase. Journal of Agricultural and Food Chemistry. 61:5404-5409.
Proteomic analysis of the testa from developing soybean seeds     Reprint Icon - (Peer Reviewed Journal)
Miernyk, J.A., Johnston, M.L. 2013. Proteomic analysis of the testa from developing soybean seeds. Journal of Proteomics. 89:265-272.
Identification of a plant introduction soybean line with genetic lesions affecting two distinct glycinin subunits and evaluation of impacts on protein content and composition     Reprint Icon - (Peer Reviewed Journal)
Kim, W., Gillman, J.D., Krishnan, H.B. 2013. Identification of a plant introduction soybean line with genetic lesions affecting two distinct glycinin subunits and evaluation of impacts on protein content and composition. Molecular Breeding. 32(2):291-298.
Classification of distinct seed carbohydrate profiles in soybean - (Peer Reviewed Journal)
Hagely, K., Palmquist, D.E., Bilyeu, K.D. 2013. Classification of distinct seed carbohydrate profiles in soybean. Journal of Agricultural and Food Chemistry. 61:1105-1111. Available: http://pubs.acs.org/doi/full/10.1021/jf303985q
A versatile mass spectrometry-based method to both identify kinase client-relationships and characterize signaling network topology     Reprint Icon - (Peer Reviewed Journal)
Ahsan, N., Huang, Y., Tovar-Mendez, A., Swatek, K.N., Zhang, J., Miernyk, J.A., Xu, D., Thelen, J. 2013. A versatile mass spectrometry-based method to both identify kinase client-relationships and characterize signaling network topology. Journal of Proteomics. 12(2):937-948.
“Seed Proteomics" - (Book / Chapter)
Miernyk, J.A. 2013. Seed Proteomics. In: Jorrin-Novo, J.V., Weckerth, W., Komatsu, S., Wienkoop, S., editors. Plant Proteomics: Methods and Protocols. 2nd edition. New York, NY: Humana Press.p. 361-377.
In silico biosynthesis of virenose, a methylated deoxy-sugar unique to Coxiella burnetii lipopolysaccharide     Reprint Icon - (Peer Reviewed Journal)
Flores-Ramirez, G., Janecek, S., Miernyk, J.A., Skultety, L. 2012. In silico biosynthesis of virenose, a methylated deoxy-sugar unique to Coxiella burnetii lipopolysaccharide. Proteome Science. 10:67.
“Scanning mutagenesis” of the amino acid sequences flanking phosphorylation site 1 of the mitochondrial pyruvate dehydrogenase complex     Reprint Icon - (Peer Reviewed Journal)
Ashan, N., Swatek, K.N., Zhang, J., Miernyk, J.A., Xxu, D., Thelen, J.J. 2012. “Scanning mutagenesis” of the amino acid sequences flanking phosphorylation site 1 of the mitochondrial pyruvate dehydrogenase complex. Frontiers in Plant Proteomics. 3:1-10.
Complete genome sequence of the broad-host-range strain Sinorhizobium fredii USDA257 - (Peer Reviewed Journal)
Schuldes, J., Orbegoso, M.R., Schmeisser, C., Krishnan, H.B., Daniel, R., Streit, W.R. 2012. Complete genome sequence of the broad-host-range strain Sinorhizobium fredii USDA257. Journal of Bacteriology. 194(16):4483.
The proteomic future: where mass spectrometry should be taking us     Reprint Icon - (Peer Reviewed Journal)
Thelen, J.J., Miernyk, J.A. 2012. The proteomic future: where mass spectrometry should be taking us. Biochemical Journal. 444/169-181.
Combinations of mutant FAD2 and FAD3 genes to produce high oleic acid and low linolenic acid soybean oil     Reprint Icon - (Peer Reviewed Journal)
Pham, A., Shannon, G.J., Bilyeu, K.D. 2012. Combinations of mutant FAD2 and FAD3 genes to produce high oleic acid and low linolenic acid soybean oil. Theoretical and Applied Genetics. 125:503-515.
Inhibition of soybean seeds in warm water results in the release of copious amounts of Bowman-Birk protease inhibitor, a putative anticarcinogenic agent - (Peer Reviewed Journal)
Palavalli, M.H., Natarajan, S.S., Wang, T.T., Krishnan, H.B. 2012. Inhibition of soybean seeds in warm water results in the release of copious amounts of Bowman-Birk protease inhibitor, a putative anticarcinogenic agent. Journal of Agricultural and Food Chemistry. 60:3135-3143.
“Parts Is Parts,” at least from the proteomics perspective - (Book / Chapter)
Miernyk, J.A. 2012. “Parts Is Parts,” at least from the proteomics perspective. In: Mock, H-P., Wang, Zz-Y, editors. Frontiers in Agriculture Proteome Research.Tsukuba, Japan: Tsukuba Science City Press. p. 24-28.
Growing location has a pronounced effect on the accumulation of cancer chemopreventive agent Bowman-Birk inhibitor in soybean seeds     Reprint Icon - (Peer Reviewed Journal)
Krishnan, H.B., Jang, S., Baxter, I.R., Wiebold, W.J. 2012. Growing location has a pronounced effect on the accumulation of cancer chemopreventive agent Bowman-Birk inhibitor in soybean seeds. Crop Science. 52:1786-1794.
New mutation in Delta-9-Stearoyl-Acyl Carrier Protein desaturase gene associated with enhanced stearic acid levels in soybean seed     Reprint Icon - (Peer Reviewed Journal)
Boersma, J.G., Ablett, G.R., Grainger, C., Gillman, J.D., Bilyeu, K.D., Rajcan, I. 2012. New mutation in Delta-9-Stearoyl-Acyl Carrier Protein desaturase gene associated with enhanced stearic acid levels in soybean seed. Crop Science. 52:1736-1742.
Environmental stability of oleic acid concentration in seed oil for soybean lines with FAD2-1A and FAD2-1B mutant genes     Reprint Icon - (Peer Reviewed Journal)
Lee, J., Bilyeu, K.D., Pantalone, V., Gillen, A.M., So, Y., Shannon, J. 2012. Environmental stability of oleic acid concentration in seed oil for soybean lines with FAD2-1A and FAD2-1B mutant genes. Crop Science. 52(3):1290-1297.
Loss-of-function mutations affecting a specific Glycine max R2R3 MYB transcription factor result in brown hilum and brown seed coats     Reprint Icon - (Peer Reviewed Journal)
Gillman, J.D., Tetlow, A., Deong-Lee, J., Shannon, G.J., Bilyeu, K.D. 2011. Loss-of-function mutations affecting a specific Glycine max R2R3 MYB transcription factor result in brown hilum and brown seed coats. Biomed Central (BMC) Plant Biology. 11:155. Available: http://www.biomedcentral.com/1471-2229/11/155.
Digging deeper into the seed proteome: Pre-fractionation of total proteins - (Book / Chapter)
Miernyk, J.A., Johnston, M.L. 2012. Digging deeper into the seed proteome: Pre-fractionation of total proteins. In: Agrawal G.K., Rakwal R. Seed Development: OMICS Technologies Toward Improvement of Seed Quality and Crop Yield. Dordrecht, Netherlands: Springer Verlag. p. 265-278.
Mapping the lipoylation site of Arabidopsis thaliana plastidial dihydrolipoamide S-acetyltransferase using mass spectrometry and site-directed mutagenesis     Reprint Icon - (Peer Reviewed Journal)
Casteel, J., Miernyk, J.A., Thelen, J.J. 2011. Mapping the lipoylation site of Arabidopsis thaliana plastidial dihydrolipoamide S-acetyltransferase using mass spectrometry and site-directed mutagenesis. Plant Physiology and Biochemistry. 49:1355-1361.
Distinct cell surface appendages produced by Sinorhizobium fredii USDA257 and S. fredii USDA191, cultivar-specific and nonspecific symbionts of soybean     Reprint Icon - (Peer Reviewed Journal)
Krishnan, H.B., Natarajan, S.S., Kim, W. 2011. Distinct cell surface appendages produced by Sinorhizobium fredii USDA257 and S. fredii USDA191, cultivar-specific and nonspecific symbionts of soybean. Applied and Environmental Microbiology. 77(17):6240-6248.
A novel FAD2-1 A allele in a soybean plant introduction offers an alternate means to produce soybean seed oil with 85% oleic acid content - (Peer Reviewed Journal)
Anh-Tung, P., Jeong-Dong, L., Grover, S.J., Bilyeu, K.D. 2011. A novel FAD2-1 A allele in a soybean plant introduction offers an alternate means to produce soybean seed oil with 85% oleic acid content. Journal of Theoretical and Applied Genetics. 123(5):793-802.
Candidates as Suspects: Delivering more nutritious soybeans after molecular genetic detective work - (Abstract Only)
(24-May-11)
Accumulation of leginsulin, a hormone-like bioactive peptide, is drastically higher in Asian than in North American soybean accessions     Reprint Icon - (Peer Reviewed Journal)
Kim, W., Jang, S., Krishnan, H.B. 2011. Accumulation of leginsulin, a hormone-like bioactive peptide, is drastically higher in Asian than in North American soybean accessions. Crop Science. 52:262-271.
Proteomic analysis of high protein soybean (Glycine max) accessions demonstrates the contribution of novel glycinin subunits - (Peer Reviewed Journal)
Krishnan, H.B., Nelson, R.L. 2011. Proteomic analysis of high protein soybean (Glycine max) accessions demonstrates the contribution of novel glycinin subunits. Journal of Agricultural and Food Chemistry. 59:2432-2439.
Genes and alleles for quality traits on the soybean genetic/physical map - (Book / Chapter)
Gillman, J.D., Bilyeu, K.D. 2012. Genes and alleles for quality traits on the soybean genetic/physical map. Journal of the American Oil Chemists' Society. Wilson, RF., editors. Designing Soybeans for 21st Century Markets. Urbana, IL: AOCS Press. p.63-92.
Seed proteomics - (Peer Reviewed Journal)
Miernyk, J.A., Hajduch, M. 2010. Seed proteomics. Journal of Proteomics. 74(4):389-400.
Agricultural recovery of a formerly contaminated area: Establishment of a high-resolution quantitative protein map of mature flax seeds harvested from the remediated chernobyl area - (Peer Reviewed Journal)
Miernyk, J.A., Klubicova, K., Bercak, M., Danchenko, M., Skultey, L., Rashydov, N.M., Berezhna, V.V., Hajduch, M. 2010. Agricultural recovery of a formerly contaminated area: Establishment of a high-resolution quantitative protein map of mature flax seeds harvested from the remediated chernobyl area. Phytochemistry. 72:1308-1315.
Last Modified: 10/23/2014
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