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United States Department of Agriculture

Agricultural Research Service

Research Project: IDENTIFYING AND MANIPULATING DETERMINANTS OF PHOTOSYNTHATE PRODUCTION AND PARTITIONING Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

A bacterial tyrosine phosphatase inhibits plant pattern recognition receptor activation - (Peer Reviewed Journal)
Macho, A., Schwessinger, B., Ntoukakis, V., Brutis, A., Segonzac, C., Roy, S., Kadota, Y., Oh, M., Sklenar, J., Huber, S.C., et al. 2014. A bacterial tyrosine phosphatase inhibits plant pattern recognition receptor activation. Science. 343:1509-1512.
A meta-analysis of responses of canopy photosynthetic conversion efficiency to environmental factors reveal major causes of yield gap - (Peer Reviewed Journal)
Slattery, R.A., Ainsworth, E.A., Ort, D.R. 2013. A meta-analysis of responses of canopy photosynthetic conversion efficiency to environmental factors reveal major causes of yield gap. Journal of Experimental Botany. DOI:10.1093/jxb/ert207.
How will the two major Midwest crops respond to global climate change? Results from ten years of investigation at SoyFACE - (Abstract Only)
(17-May-13)
Identification and functional analysis of tomato BRI1 and BAK1 receptor kinase phosphorylation sites - (Peer Reviewed Journal)
Bajwa, V.S., Wang, X., Blackburn, R.K., Goshe, M.B., Mitra, S.K., Williams, E.L., Bishop, G.J., Krasnyanski, S., Allen, G., Huber, S.C., Clouse, S.D. 2013. Identification and functional analysis of tomato BRI1 and BAK1 receptor kinase phosphorylation sites. Plant Physiology. 163:30-42.
Impacts of elevated CO2 concentration on the productivity and surface energy budget of the soybean and maize agroecosystem in the Midwest US - (Peer Reviewed Journal)
(13-May-13)
Identifying physiological gains in the historic Midwest soybean germplasm - (Abstract Only)
(09-May-13)
Soybean leaf hydraulic conductance does not acclimate to growth at elevated [CO2] or temperature in growth chambers or in the field - (Peer Reviewed Journal)
Locke, A.M., Sack, L., Bernacchi, C.J., Ort, D.R. 2013. Soybean leaf hydraulic conductance does not acclimate to growth at elevated [CO2] or temperature in growth chambers or in the field. Annals Of Botany. 112(5):911-918.
Using leaf optical properties to detect ozone effects on foliar biochemistry - (Peer Reviewed Journal)
Ainsworth, E.A., Serbin, S.P., Skoneczka, J.A., Townsend, P.A. 2013. Using leaf optical properties to detect ozone effects on foliar biochemistry. Photosynthesis Research. DOI:10.1007/s11120-013-9837-y.
Chronic ozone exacerbates the reduction in photosynthesis and acceleration of senescence caused by limited N availability in Nicotiana sylvestris - (Peer Reviewed Journal)
Yendrek, C.R., Leisner, C.P., Ainsworth, E.A. 2013. Chronic ozone exacerbates the reduction in photosynthesis and acceleration of senescence caused by limited N availability in Nicotiana sylvestris. Global Change Biology. 19(10):3155-3166.
Modelling C3 photosynthesis from the chloroplast to the ecosystem - (Peer Reviewed Journal)
Bernacchi, C.J., Bagley, J.E., Serbin, S.P., Ruiz-Vera, U.M., Rosenthal, D.M., VanLoocke, A.D. 2013. Modelling C3 photosynthesis from the chloroplast to the ecosystem. Plant Cell and Environment. 36:1641-1657.
Water use efficiency of perennial and annual bioenergy crops in central Illinois - (Peer Reviewed Journal)
Zeri, M., Zaman Hussain, M., Anderson-Teixeira, K.J., DeLucia, E.H., Bernacchi, C.J. 2013. Water use efficiency of perennial and annual bioenergy crops in central Illinois. Journal of Geophysical Research-Biogeosciences. 118(2):581-589.
Global warming can negate the expected CO2 stimulation in photosynthesis and productivity for soybean grown in the Midwest United States - (Peer Reviewed Journal)
Ruiz-Vera, U.M., Siebers, M., Gray, S., Rosenthal, D.M., Kimball, B.A., Ort, D.R., Bernacchi, C.J. 2013. Global warming can negate the expected CO2 stimulation in photosynthesis and productivity for soybean grown in the Midwest United States. Plant Physiology. 162:410-423.
Maximizing soybean production in a high CO2 world - (Abstract Only)
(17-Jan-13)
Future carbon dioxide concentration decreases canopy evapotranspiration and soil water depletion by field-grown maize - (Peer Reviewed Journal)
Hussain, M.Z., VanLoocke, A., Markelz, R., Leakey, A., Ort, D.R., Bernacchi, C.J. 2013. Future carbon dioxide concentration decreases canopy evapotranspiration and soil water depletion by field-grown maize. Global Change Biology. 19(5):1572-1584.
Future carbon dioxide concentration decreases canopy evapotranspiration and soil water depletion by field-grown maize - (Peer Reviewed Journal)
Hussain, M.Z., VanLoocke, A.D., Markelz, R., Siebers, M.H., Ruiz-Vera, U.M., Leakey, A., Ort, D.R., Bernacchi, C.J. 2013. Future carbon dioxide concentration decreases canopy evapotranspiration and soil water depletion by field-grown maize. Global Change Biology. 19:1572-1584.
Energy and carbon accounting to compare bioenergy crops - (Peer Reviewed Journal)
Borak, B., Ort, D.R., Burbaum, J.J. 2013. Energy and carbon accounting to compare bioenergy crops. Current Opinion in Biotechnology. 24(3):369-375.
Gap filling strategies and error in estimating annual soil respiration - (Peer Reviewed Journal)
Gomez-Casanovas, N., Anderson-Teixeira, K., Zeri, M., Bernacchi, C.J., DeLucia, E.H. 2013. Gap filling strategies and error in estimating annual soil respiration. Global Change Biology. 19(6):1941-1952.
Transphosphorylation of E. coli proteins during production of recombinant protein kinases provides a robust system to characterize kinase specificity - (Peer Reviewed Journal)
Wu, X., Oh, M., Kim, H., Schwartz, D., Imai, B., Yau, P., Clouse, S.D., Huber, S.C. 2012. Transphosphorylation of E. coli proteins during production of recombinant protein kinases provides a robust system to characterize kinase specificity. Frontiers in Plant Science. 3:262.
Altered belowground carbon cycling following land use change to perennial bioenergy crops - (Peer Reviewed Journal)
Anderson-Teixeira, K.J., Masters, M.D., Black, C.K., Zeri, M., Hussain, Z., Bernacchi, C.J., DeLucia, E. 2013. Altered belowground carbon cycling following land use change to perennial bioenergy crops. Ecosystems. DOI: 10.1007/s10021-012-9628-x.
A comparative study of the Arabidopsis thaliana guard-cell transcriptome and its modulation by sucrose - (Peer Reviewed Journal)
Bates, G.W., Rosenthal, D.M., Sun, J., Chattopadhyay, M., Peffer, E., Jones, A.M., Ort, D.R. 2012. A comparative study of the Arabidopsis thaliana guard-cell transcriptome and its modulation by sucrose. PLoS One. 7(11):e49641.
Differential lysine acetylation profiles of Erwinia amylovora strains revealed by proteomics - (Peer Reviewed Journal)
Wu, X., Vellaichamy, A., Wang, D., Zamdborg, L., Kelleher, N., Huber, S.C., Zhao, Y. 2013. Differential lysine acetylation profiles of Erwinia amylovora strains revealed by proteomics. Journal of Proteomics. 79:60-71.
CDPKs are dual-specificity protein kinases and tyrosine autophosphorylation attenuates kinase activity - (Peer Reviewed Journal)
Oh, M., Wu, X., Kim, H., Harper, J., Zielinski, R., Clouse, S.D., Huber, S.C. 2012. CDPKs are dual-specificity protein kinases and tyrosine autophosphorylation attenuates kinase activity. FEBS Letters. 586(23):4070-4075.
Ozone exposure response for U.S. soybean cultivars: linear reductions in photosynthetic potential, biomass and yield - (Peer Reviewed Journal)
Betzelberger, A.M., Yendrek, C.R., Sun, J., Leisner, C.P., Nelson, R.L., Ort, D.R., Ainsworth, E.A. 2012. Ozone exposure response for U.S. soybean cultivars: linear reductions in photosynthetic potential, biomass and yield. Plant Physiology. 160(4):1827-1839.
CO2 uptake and ecophysiological parameters of the grain crops of midcontinent North America: estimates from flux tower measurements - (Peer Reviewed Journal)
Gilmanov, T.G., Wylie, B.K., Tieszen, L.L., Meyers, T.P., Amiro, B.D., Baron, V.S., Bernacchi, C.J., Billesbach, D.P., Burba, G.G., Fischer, M.L., Hatfield, J.L., Prueger, J.H. 2013. CO2 uptake and ecophysiological parameters of the grain crops of midcontinent North America: estimates from flux tower measurements. Agriculture, Ecosystems and Environment. 164:162-175.
The bench scientist's guide to RNA-Seq analysis - (Peer Reviewed Journal)
Yendrek, C.R., Ainsworth, E.A., Thimmapuram, J. 2013. Method: The bench scientist's guide to RNA-Seq analysis. BMC Research Notes. 5:506.
Reduced nitrogen losses following conversion of row crop agriculture to perennial biofuel crops - (Peer Reviewed Journal)
Smith, C.M., David, M.B., Mitchell, C.A., Masters, M.D., Anderson-Teixiera, K.J., Bernacchi, C.J., DeLucia, E.H. 2013. Reduced nitrogen losses following conversion of row crop agriculture to perennial biofuel crops. Journal of Environmental Quality. 42:219-228.
Tyrosine phosphorylation of the BRI1 receptor kinase occurs via a posttranslational modification and is activated by the juxtamembrane domain - (Peer Reviewed Journal)
Oh, M., Clouse, S.D., Huber, S.C. 2012. Tyrosine phosphorylation of the BRI1 receptor kinase occurs via a posttranslational modification and is activated by the juxtamembrane domain. Frontiers in Plant Physiology. 3:175.
Urgent need for basic treatment data to make precipitation manipulation experiments comparable - (Peer Reviewed Journal)
Vicca, S., Gilgen, A.K., Camino Serrano, M., Dreesen, F.E., Dukes, J.S., Estiarte, M., Gray, S.B., Guidolotti, G., Leakey, A., Ogaya, R., Ort, D.R., Ostrogovic, M., Rambal, S., Sardans, J., Schmitt, M., Siebers, M., Van Der Linden, L., Van Straaten, O., Granier, A. 2012. Urgent need for basic treatment data to make precipitation manipulation experiments comparable. New Phytologist. 195(3):518:522.
Impacts of herbaceous bioenergy crops on atmospheric volatile organic composition and potential consequences for global climate change - (Peer Reviewed Journal)
(22-May-12)
A regional comparison of water use efficiency for miscanthus, switchgrass and maize - (Peer Reviewed Journal)
VanLoocke, A., Twine, T.E., Zeri, M., Bernacchi, C.J. 2012. A regional comparison of water use efficiency for miscanthus, switchgrass and maize. Agricultural and Forest Meteorology. 164:82-95.
Comparative transcriptomics implicates glutathione as a key regulator of ozone tolerance in legume crops - (Abstract Only)
Yendrek, C.R., Koester, R.P., Ainsworth, E.A. 2012. Comparative transcriptomics implicates glutathione as a key regulator of ozone tolerance in legume crops [abstract]. Plant Biology Annual Meeting. Paper No. P23003.
Quantifying gaps in understanding of crop and ecosystem responses to elevated CO2 - (Abstract Only)
Bishop, K., Leakey, A., Ainsworth, E.A. 2012. Quantifying gaps in understanding of crop and ecosystem responses to elevated CO2 [abstract]. Plant Biology Annual Meeting. Paper No. P23001.
Identifying physiological gains in the historic Midwest soybean germplasm - (Abstract Only)
Koester, R.P., Skoneczka, J.A., Diers, B.W., Ainsworth, E.A. 2012. Identifying physiological gains in the historic Midwest soybean germplasm [abstract]. Plant Biology Annual Meeting. Paper No. P29001.
Dissecting Arabidopsis G beta signal transduction on the protein surface - (Peer Reviewed Journal)
Jiang, K., Frick-Chen, A., Trusov, Y., Delgado-Cerezo, M., Rosenthal, D.M., Lorek, J., Panstruga, R., Booker, F.L., Botella, J., Molina, A., Ort, D.R., Jones, A.M. 2012. Dissecting Arabidopsis G beta signal transduction on the protein surface. Plant Physiology. 159:975-983.
Cassava about-FACE: Greater than expected yield stimulation of cassava (Manihot esculenta) by future CO2 levels - (Peer Reviewed Journal)
Rosenthal, D.M., Slattery, R.A., Miller, R.E., Grennan, A.K., Gleadow, R.M., Cavagnaro, T.R., Fauquet, C.M., Ort, D.R. 2012. Cassava about-FACE: Greater than expected yield stimulation of cassava (Manihot esculenta) by future CO2 levels. Global Change Biology. 18:2661-2675.
Elements of a dynamic systems model of canopy photosynthesis - (Peer Reviewed Journal)
Zhu, X., Song, Q., Ort, D.R. 2012. Elements of a dynamic systems model of canopy photosynthesis. Current Opinion in Plant Biology. 15(3):237-244.
Rising ozone concentrations decrease soybean evapotranspiration and water use efficiency while increasing canopy temperature - (Peer Reviewed Journal)
VanLoocke, A., Betzelberger, A.M., Ainsworth, E.A., Bernacchi, C.J. 2012. Rising ozone concentrations decrease soybean evapotranspiration and water use efficiency while increasing canopy temperature. New Phytologist. 195(1):164-171.
Calcium/calmodulin inhibition of the BRI1 receptor kinase provides a possible link between calcium- and brassinosteroid-signaling - (Peer Reviewed Journal)
Oh, M., Kim, H., Wu, X., Clouse, S.D., Zielinski, R.E., Huber, S.C. 2012. Calcium/calmodulin inhibition of the BRI1 receptor kinase provides a possible link between calcium- and brassinosteroid-signaling. Biochemical Journal. 443:515-223.
A multi-biome gap in understanding of crop and ecosystem responses to elevated CO2 - (Peer Reviewed Journal)
Leakey, A., Bishop, K.A., Ainsworth, E.A. 2012. A multi-biome gap in understanding of crop and ecosystem responses to elevated CO2. Current Opinion in Plant Biology. 15(3):228-236.
From climate change to molecular response: redox proteomics of ozone-induced responses in soybean - (Peer Reviewed Journal)
Galant, A., Koester, R.P., Ainsworth, E.A., Hicks, L.M., Jez, J.M. 2012. From climate change to molecular response: redox proteomics of ozone-induced responses in soybean. New Phytologist. 194(1):220-229.
The effects of tropospheric ozone on net primary production and implications for climate change - (Peer Reviewed Journal)
Ainsworth, E.A., Yendrek, C.R., Sitch, S., Collins, W.J., Emberson, L.D. 2012. The effects of tropospheric ozone on net primary production and implications for climate change. Annual Reviews of Plant Biology. 63:637-661.
Deactivation of the Arabidopsis BRI1 receptor kinase by autophosphorylation within the glycine-rich loop involved in ATP binding - (Peer Reviewed Journal)
Oh, M., Wang, X., Clouse, S.D., Huber, S.C. 2012. Deactivation of the Arabidopsis BRI1 receptor kinase by autophosphorylation within the glycine-rich loop involved in ATP binding. Proceedings of the National Academy of Sciences. 109:327-332.
Ozone decreases soybean productivity and water use efficiency - (Abstract Only)
Betzelberger, A.M., Vanloocke, A.D., Bernacchi, C.J., Ainsworth, E.A. 2011. Ozone decreases soybean productivity and water use efficiency [abstract]. American Geophysical Union. PA33B-1822.
Identifying molecular markers for ozone tolerance in soybean - (Abstract Only)
Ainsworth, E.A., Skoneczka, J.A., Nelson, R.L. 2012. Identifying molecular markers for ozone tolerance in soybean [abstract]. Plant and Animal Genome Conference. Paper No. W664.
Examining cassava's potential to enhance food security under climate change - (Peer Reviewed Journal)
Rosenthal, D.M., Ort, D.R. 2012. Examining cassava's potential to enhance food security under climate change. Tropical Plant Biology. 5(1):30-38.
The orphan gene ybjN conveys pleiotropic effects on multicellular behavior and survival of Escherichia coli - (Peer Reviewed Journal)
Wang, D., Calla, B., Vimolmangkang, S., Korban, S.S., Wu, X., Huber, S.C., Clough, S.J., Zhao, Y. 2011. The orphan gene ybjN conveys pleiotropic effects on multicellular behavior and survival of Escherichia coli. PLoS One. 6(9):e25293.
Accelerating yield potential in soybean: potential targets for biotechnological improvement - (Peer Reviewed Journal)
Ainsworth, E.A., Yendrek, C.R., Skoneczka, J.A., Long, S.P. 2011. Accelerating yield potential in soybean: potential targets for biotechnological improvement. Plant Cell and Environment. 35(1):38-52.
Effects of elevated temperature and CO2 on gas exchange and chlorophyll fluorescence in soybean (Glycine max (L.) Merr.) and maize (Zea mays) grown under open-air field conditions - (Abstract Only)
Ruiz Vera, U.M., Siebers, M., Rosenthal, D.M., Gray, S., Ort, D.R., Bernacchi, C.J. 2011. Effects of elevated temperature and CO2 on gas exchange and chlorophyll fluorescence in soybean (Glycine max (L.) Merr.) and maize (Zea mays) grown under open-air field conditions [abstract]. American Society of Plant Biologists. Paper No. M2102.
Phosphorylation and RLK signaling - (Book / Chapter)
Clouse, S.D., Goshe, M.B., Huber, S.C. 2012. Phosphorylation and RLK signaling. In: Kemmerling, B., Tax, F., editors. Receptor-Like Kinases in Plants: From Signaling to Development. Berlin Heidelberg, Germany: Springer-Verlag. p. 222-252.
Optimizing chlorophyll content in soybean - (Abstract Only)
Slattery, R.A., Ort, D.R. 2011. Optimizing chlorophyll content in soybean [abstract]. American Society of Plant Biologists. Paper No. P22015.
Redox: another level of regulation in chlorophyll metabolism? - (Abstract Only)
Grennan, A.K., Ort, D.R. 2011. Redox: another level of regulation in chlorophyll metabolism? [abstract]. American Society of Plant Biologists. Paper No. P02035.
The regulatory role of reversible phosphorylation in the chlorophyll degradation pathway - (Abstract Only)
Hall, P.K., Ort, D.R. 2011. The regulatory role of reversible phosphorylation in the chlorophyll degradation pathway [abstract]. American Society of Plant Biologists. Paper No. P02046.
No minimum threshold for ozone-induced changes in soybean canopy fluxes - (Abstract Only)
Vanloocke, A., Bernacchi, C.J., Ainsworth, E.A., Betzelberger, A.M. 2011. No minimum threshold for ozone-induced changes in soybean canopy fluxes. [abstract]. American Society of Plant Biologists. Paper No. P06007.
Impact of simulated heat waves on soybean physiology and yield - (Abstract Only)
(20-Apr-11)
Impact of simulated heat waves on soybean physiology and yield - (Abstract Only)
Siebers, M.H., Yendrek, C.R., Black, C., Drag, D.W., Rios, L., Leakey, A., Ainsworth, E.A., Delucia, E., Ort, D.R., Bernacchi, C.J. 2011. Impact of simulated heat waves on soybean physiology and yield [abstract]. American Society of Plant Biologists. Paper No. M2103.
Carbon exchange by establishing biofuel crops in Central Illinois - (Peer Reviewed Journal)
Zeri, M., Anderson-Teixeira, K., Hickman, G., Masters, M., DeLucia, E., Bernacchi, C.J. 2011. Carbon exchange by establishing biofuel crops in Central Illinois. Agriculture, Ecosystems and Environment. 144:319-329.
Net carbon uptake by establishing biofuel crops in Central Illinois - (Abstract Only)
Zeri, M., Anderson-Tiexeira, K., Hickman, G., Masters, M., Delucia, E., Bernacchi, C.J. 2011. Net carbon uptake by establishing biofuel crops in Central Illinois. AmeriFlux Science Meeting and 3rd NACP All Investigators Meeting. #C-61.
A regional comparison of water-use efficiency for Miscanthus x giganteus and Panicum virgatum - (Abstract Only)
VanLoocke, A., Zeri, M., Twine, T.E., Bernacchi, C.J. 2011. A regional comparison of water-use efficiency for Miscanthus x giganteus and Panicum virgatum. AmeriFlux Science Meeting and 3rd NACP All Investigators Meeting. #D-83.
Functional importance of EAK1 tyrosine phosphorylation in vivo - (Peer Reviewed Journal)
Oh, M., Wu, X., Clouse, S.D., Huber, S.C. 2011. Functional importance of EAK1 tyrosine phosphorylation in vivo. Plant Signaling and Behavior. 6:400-405.
Last Modified: 11/23/2014
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