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United States Department of Agriculture

Agricultural Research Service

Research Project: GENOMICS AND PROTEOMICS APPROACHES TO BROADENING RESISTANCE OF SOYBEAN TO PESTS AND PATHOGENS

Location: Soybean Genomics and Improvement

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Expression analysis in soybean of IDA-like, HAESA-like and other key regulatory proteins during leaf abscission and cyst nematode infected roots - (Peer Reviewed Journal)
Tucker, M.L., Yang, R. 2012. Expression analysis in soybean of IDA-like, HAESA-like and other key regulatory proteins during leaf abscission and cyst nematode infected roots. Plant Physiology. doi:10.1093/aobpla/pls035.
Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing - (Peer Reviewed Journal)
Tremblay, A., Hosseini, P., Li, S., Alkharouf, N.W., Matthews, B.F. 2013. Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing. Biomed Central (BMC) Genomics. 14:614.
Separation anxiety: An analysis of ethylene-induced cleavage of EIN2     Reprint Icon - (Peer Reviewed Journal)
Cooper, B. 2013. Separation anxiety: An analysis of ethylene-induced cleavage of EIN2. Plant Signaling and Behavior. 8(7):e24721-1-e24721-5.
An IDA-like gene is expressed in root-knot nematodes (Meloidogyne spp.) - (Peer Reviewed Journal)
Tucker, M.L., Yang, R. 2013. An IDA-like gene is expressed in root-knot nematodes (Meloidogyne spp.). Experimental Parasitology. 134:165-170.
The problem with peptide presumption and the downfall of target-decoy false discovery rates     Reprint Icon - (Peer Reviewed Journal)
Cooper, B. 2012. The problem with peptide presumption and the downfall of target-decoy false discovery rates. Analytical Chemistry. 84:9663-9667.
CTR1 phosphorylates the central regulator EIN2 to control ethylene hormone signaling from the ER membrane to the nucleus in Arabidopsis     Reprint Icon - (Peer Reviewed Journal)
Ju, C., Yoon, G., Shemansky, J., Lin, D., Ying, I.S., Chang, J., Garrett, W.M., Kessenbrock, M., Groth, G., Tucker, M.L., Cooper, B., Kieber, J.J., Chang, C. 2012. CTR1 phosphorylates the central regulator EIN2 to control ethylene hormone signaling from the ER membrane to the nucleus in Arabidopsis. Proceedings of the National Academy of Sciences. 109:19486-19491.
The expression of a naturally occuriing truncated allele of an alpha-SNAP gene suppresses plant parasitic nematode infection - (Peer Reviewed Journal)
Matsye, P.D., Lawrence, G.W., Youssef, R., Kim, K., Matthews, B.F., Klink, V.P. 2012. Functional analysis of a naturally occurring mutant of an alpha soluble NSF attachment protein gene residing within the RHG1 locus. Plant Molecular Biology. 79:1-25.
A parallelized binary search tree     Reprint Icon - (Peer Reviewed Journal)
Feng, J., Naiman, D., Cooper, B. 2011. A parallelized binary search tree. Journal of Information Technology and Software Engineering. 1:103.
Gene expression in leaves of susceptible Glycine max during infection with Phakopsora pachyrhizi using Next-Generation sequencing     Reprint Icon - (Peer Reviewed Journal)
Tremblay, A., Hosseini, P., Alkharouf, N.W., Li, S., Matthews, B.F. 2011. Gene expression in leaves of susceptible Glycine max during infection with Phakopsora pachyrhizi using Next-Generation sequencing. Sequencing. doi:10.1155/2011/827250.
Identification of genes expressed by Phakopsora pachyrhizi, the pathogen causing soybean rust, at a late stage of infection of susceptible soybean leaves - (Peer Reviewed Journal)
Tremblay, A., Hosseini, P., Li, S., Alkharouf, N., Matthews, B.F. 2011. Identification of genes expressed by Phakopsora pachyrhizi, the pathogen causing soybean rust, at a late stage of infection of susceptible soybean leaves. Plant Pathology. 60:1-14.
Mapping cell fate decisions that occur during soybean defense responses - (Peer Reviewed Journal)
Matsye, P.D., Kumar, R., Hosseini, P., Jones, C.M., Alkharouf, N.W., Matthews, B.F., Klink, V.P. 2011. Mapping cell fate decisions that occur during soybean defense responses. Plant Molecular Biology. 77:513-528.
Using Illumina mRNA-Sequencing to understand Glycine max-Phakopsora pachyhrizi interaction - (Abstract Only)
(15-Apr-11)
Using a next generation sequencing strategy to understand Glycine max-Phakopsora pachyhrizi interaction - (Abstract Only)
(23-Mar-11)
Discovery of new soybean and soybean rust genes using next generation sequencing - (Abstract Only)
(01-Mar-11)
Overexpression of the MAP kinase gene OsMAPK33 enhances sensitivity to salt stress in rice (Oryza sativa L.) - (Peer Reviewed Journal)
Lee, S., Kim, B., Kwon, T., Jeong, M., Park, S., Lee, J., Byun, M., Kwon, H., Matthews, B.F., Hong, C., Park, S. 2011. Overexpression of the MAP kinase gene OsMAPK33 enhances sensitivity to salt stress in rice (Oryza sativa L.). Journal of Bioscience and Bioengineering. 36:139-151.
Differences in gene expression amplitude overlie a conserved transcriptomic program occurring between the rapid and potent localized resistant reaction at the syncytium of the Glycine max genotype Peking (PI 548402) - (Peer Reviewed Journal)
Klink, V.P., Hosseini, P., Matsye, P.D., Alkharouf, N.W., Matthews, B.F. 2012. Differences in gene expression amplitude overlie a conserved transcriptomic program occurring between the rapid and potent localized resistant reaction at the syncytium of the Glycine max genotype Peking (PI 548402). Plant Molecular Biology. 75:141-165.
Last Modified: 9/1/2014
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