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United States Department of Agriculture

Agricultural Research Service

Research Project: GENETIC ENHANCEMENT OF SOYBEAN SEED VALUE BY BIOTECHNOLOGY Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Analysis of isotopic labeling in peptide fragments by tandem mass spectrometry     Reprint Icon - (Peer Reviewed Journal)
Allen, D.K., Libourel, I.G. 2014. Analysis of isotopic labeling in peptide fragments by tandem mass spectrometry. PLoS One. 9(3):e91537. DOI:10.1371/journal.pone.0091537.
Quantification of peptide m/z distributions from 13C-labeled cultures with high resolution mass spectrometry     Reprint Icon - (Peer Reviewed Journal)
Allen, D.K., Goldford, J., Gierse, J.K., Mandy, D., Diepenbrock, C.H., Libourel, I. 2014. Quantification of peptide m/z distributions from 13C-labeled cultures with high resolution mass spectrometry. Analytical Chemistry. 86:1894-1901.
Metabolic flux analysis using 13C peptide label measurements     Reprint Icon - (Peer Reviewed Journal)
Mandy, D., Goldford, J., Yang, H., Allen, D.K., Libourel, I. 2013. Metabolic flux analysis using 13C peptide label measurements. Plant Journal. 77:476-486.
Elemental concentrations in the seed of mutants and natural variants of Arabidopsis thaliana grown under varying soil conditions     Reprint Icon - (Peer Reviewed Journal)
McDowell, S.C., Akmakjian, G., Sladek, C., Mendoza-Cozatl, D., Saini, N., Baxter, I.R., Guerinot, M., Harper, J.F. 2013. Elemental concentrations in the seed of mutants and natural variants of Arabidopsis thaliana grown under varying soil conditions. PLoS One. 8(5):e63014.
Leveraging non-targeted metabolite profiling via statistical genomics     Reprint Icon - (Peer Reviewed Journal)
Shen, M., Broeckling, C., Chu, E., Ziegler, G., Baxter, I.R., Prenni, J., Hoekenga, O. 2013. Leveraging non-targeted metabolite profiling via statistical genomics. PLoS One. 8(2):e57667. Available: http://www.plosone.org/article/info:doi/10.1371/journal.pone.0057667.
Carbon and nitrogen provisions alter the metabolic flux in developing soybean embryos     Reprint Icon - (Peer Reviewed Journal)
Allen, D.K., Young, J.D. 2013. Carbon and nitrogen provisions alter the metabolic flux in developing soybean embryos. Plant Physiology. 161:1458-1475.
High-resolution genome-wide scan of genes, gene-networks and cellular systems impacting the yeast ionome - (Peer Reviewed Journal)
Yu, D., Danku, J., Baxter, I.R., Kim, S., Vatamaniuk, O., Vitek, O., Ouzzani, M., Salt, D. 2012. High-resolution genome-wide scan of genes, gene-networks and cellular systems impacting the yeast ionome. Biomed Central (BMC) Genomics. 13:623.
Ionomic screening of field-grown soybeans identifies mutants with altered seed elemental composition     Reprint Icon - (Peer Reviewed Journal)
Ziegler, G., Terauchi, A.M., Becker, A., Armstrong, P.R., Hudson, K.A., Baxter, I.R. 2012. Ionomic screening of field-grown soybeans identifies mutants with altered seed elemental composition. The Plant Genome. 6(2):1-9.
Genome-wide association studies identify heavy metal ATPase3 as the primary determinant of natural variation in leaf cadmium in Arabidopsis thaliana     Reprint Icon - (Peer Reviewed Journal)
Chao, D., Silva, A., Baxter, I.R., Huang, Y., Nordborg, M., Danku, J., Lahner, B., Yakubova, E., Salt, D. 2012. Genome-wide association studies identify heavy metal ATPase3 as the primary determinant of natural variation in leaf cadmium in Arabidopsis thaliana. PLoS Genetics. 8(9):e1002923.
Ionomic characterization of maize kernels in the Intermated B73 x Mo17 (IBM) population     Reprint Icon - (Peer Reviewed Journal)
Baxter, I.R., Gustin, J.L., Settles, M.A., Hoekenga, O. 2012. Ionomic characterization of maize kernels in the Intermated B73 x Mo17 (IBM) population. Crop Science. 53:208-220.
Elemental profiles reflect plant adaptations to the environment - (Peer Reviewed Journal)
Baxter, I.R., Dilkes, B. 2012. Elemental profiles reflect plant adaptations to the environment. Science. 336:1661-1663.
Biodiversity of mineral nutrient and trace element accumulation in Arabidopsis thaliana     Reprint Icon - (Peer Reviewed Journal)
Baxter, I.R., Hermans, C., Lahner, B., Yakubova, E., Tikhonova, M., Verbruggen, N., Chao, D., Salt, D.E. 2012. Biodiversity of mineral nutrient and trace element accumulation in Arabidopsis thaliana. PLoS One. 7(4):e35121. Available: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0035121.
Isotope labeling of rubisco subunits provides in vivo information on subcellular biosynthesis and exchange of amino acids between compartments.     Reprint Icon - (Peer Reviewed Journal)
Allen, D.K., Laclair, R.W., Ohlrogge, J.B., Shachar-Hill, Y. 2012. Isotope labeling of rubisco subunits provides in vivo information on subcellular biosynthesis and exchange of amino acids between compartments. Plant Cell and Environment. 35(7):1232-1244.
Rapid kinetic labeling of Arabidopsis cell suspension cultures: Implications for models of lipid export from plastids     Reprint Icon - (Peer Reviewed Journal)
Tjellstrom, H., Yang, Z., Allen, D.K., Ohlrogge, J.B. 2011. Rapid kinetic labeling of Arabidopsis cell suspension cultures: Implications for models of lipid export from plastids. Plant Physiology. 158:601-611.
Suppression of phospholipase D,gammas confers increased aluminum resistance in Arabidopsis thaliana     Reprint Icon - (Peer Reviewed Journal)
Zhao, J., Wang, C., Welti, R., Bedair, M., Sumner, L., Baxter, I.R., Wang, X. 2011. Suppression of phospholipase D,gammas confers increased aluminum resistance in Arabidopsis thaliana. PLoS One. 6(12):e28086. Available: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0028086.
Insights into primary metabolism in oilseeds from labeling and flux analysis - (Abstract Only)
(30-Jan-11)
A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2 - (Peer Reviewed Journal)
Thiele, I., Huduke, D.R., Steeb, B., Fankam, G., Allen, D.K., Bazzani, S., Charusanti, P., Chen, F., Fleming, R.M., Hsiung, C.A., Dekeersmaecker, S.C., Liao, Y., Marchal, K., Mo, M.L., Ozdemir, E., Raghunathan, A., Reed, J.L., Shin, S., Sigurbjornsdottir, S., Steinmann, J., Sudarsan, S., Swainston, N., Thijs, I.M., Zengler, K., Palsson, B.O., Adkins, J.N., Dirk, B. 2011. A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella typhimurium LT2. BMC Systems Biology. 5:8.
Last Modified: 12/19/2014
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