Location: Plant-Microbe Interactions Research
2012 Annual Report
The potential for high socio-economic impact makes it essentially impossible to conduct designed experiments to validate epidemiological models for the spread of these diseases in real-world settings. In the absence of data from controlled experiments to test specific hypotheses and predictions, it is common to rely on endorsements by trusted subject matter experts or by fitting to extant observational data. In contrast, plant diseases such as wheat leaf rust, sudden oak death and late blight of potato and tomato offer the opportunity to conduct extensive validation of models and thereby to gain better insight into the spatiotemporal dynamics of infectious diseases.
Since infectious diseases of plants and animals can spread over similar scales of space and time, it makes sense to use plant diseases as proxies for highly contagious foreign animal diseases such as FMD in order to address generic, high-level questions relating to commonalities among pathosystems and methodologies for constructing quantitative models. By first addressing some more general, high-level questions in the context of particular well-characterized model plant systems, we propose to identify and address generic statistical and methodological issues, and then to test solutions to these problems in the context of specific models. This knowledge can then be used to guide the development, implementation and testing of models for specific animal diseases, despite the differences in the details of the models and biology of the organisms involved.
The USDA and DHS, in collaboration with researchers at Cornell University, are currently working together closely to address these problems. Within USDA and Cornell, this performance site is uniquely qualified to provide expertise in statistical physics, dynamical systems, applied mathematics, computational science, and close cooperation with subject matter experts in plant diseases. In addition, there are well-established relationships across a range of technical and scientific disciplines relevant to the project. The performer has already established a working relationship with DHS S&T and USDA-APHIS, as well as other DHS S&T performers (e.g., RAPPID).
Since award of this IAA on 21 January 2010, the Ithaca group has established a highly productive working relationship with several RAPIDD Working Groups. In addition, the group is now collaborating with researchers at Cornell (Ithaca, NY) and Cambridge (Cambridge, UK). The Ithaca group has been developing methods that exploit land use and related geographic and remote sensing data into spatial models of disease outbreaks. This is a unique and time critical opportunity for the DHS S&T FAD Modeling Program. Existing funding will be used to support two students, two full time senior scientific staff members and two postdoctoral researchers. These positions will all be supported for the remainder of this IAA (through Jan. 2014).