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United States Department of Agriculture

Agricultural Research Service

Research Project: FUNCTIONAL GENOMICS FOR IMPROVING NUTRIENTS AND QUALITY IN ALFALFA AND SOYBEAN

Location: Plant Science Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Legume genomics: understanding biology through DNA and RNA sequencing - (Peer Reviewed Journal)
(26-Apr-14)
A re-sequencing based assessment of genomic heterogeneity and fast neutron-induced deletions in a common bean cultivar     Reprint Icon - (Peer Reviewed Journal)
O'Rourke, J.A., Iniguez, L.P., Bucciarelli, B., Roessler, J., Schumtz, J., McClean, P., Jackson, S.A., Hernandez, G., Graham, M.A., Stupar, R.M., Vance, C.P. 2013. A re-sequencing based assessment of genomic heterogeneity and fast neutron-induced deletions in a common bean cultivar. Frontiers in Plant Genetics and Genomics. DOI:10.3389/fpls.2013.00210.
Past, present, and future of Brachypodium as a model plant - (Abstract Only)
Garvin, D.F. 2013. Past, present, and future of Brachypodium as a model plant [abstract]. 1st International Brachypodium Conference, June 19-21, 2013, Modena, Italy. p. SO.1.
Genomic heterogeneity and structural variation in soybean near isogenic lines     Reprint Icon - (Peer Reviewed Journal)
Stec, A.O., Bhaskar, P.B., Bolon, Y., Nolan, R.K., Shoemaker, R.C., Vance, C.P., Stupar, R.M. 2013. Genomic heterogeneity and structural variation in soybean near isogenic lines. Frontiers in Plant Genetics and Genomics. DOI:10.3389/fpls.2013.00104.
Report of the 2012 Uniform Regional Scab Nursery for Spring Wheat Parents - (Other)
Garvin, D.F., Blankenheim, Z. 2013. Report of the 2012 Uniform Regional Scab Nursery for Spring Wheat Parents. Uniform Regional Scab Nursery for Spring Wheat Parents. 15 p. Available: http://scabusa.org/pdfs_dpupload/ursn12_report.pdf.
An RNA-seq transcriptome analysis of orthophosphate-deficient white lupin reveals novel insights into phosphorus acclimation in plants - (Peer Reviewed Journal)
O'Rourke, J.A., Yang, S.H., Miller, S.S., Bucciarelli, B., Liu, J., Rydeen, A., Uhde-Stone, C., Tu, Z., Allan, D., Gronwald, J.W., Vance, C.P. 2012. An RNA-seq transcriptome analysis of orthophosphate-deficient white lupin reveals novel insights into phosphorus acclimation in plants. Plant Physiology. 161(1):705-724.
Investigating nitrogen deficiency in common beans - (Abstract Only)
O'Rourke, J.A., Iniguez, L.P., Bucciarelli, B., Woodey, J.L., Shoemaker, R.C., Graham, M.A., Cannon, S.B., Mcclean, P.E., Jackson, S.A., Hernandez, G., Vance, C.P. 2012. Investigating nitrogen deficiency in common beans [abstract]. Molecular & Cellular Biology of the Soybean Conference, August 12-15, 2012, Des Moines, Iowa. Available: http://www.extension.iastate.edu/registration/events/soybean/speakeranchor.htm#speaker16.
How resilient is the soybean genome? Insights from fast neutron mutagenesis - (Abstract Only)
Bolon, Y., Stec, A., Roessler, J., Michno, J., Anderson, J., Muehlbauer, G., Vance, C.P., Stupar, R. 2012. How resilient is the soybean genome? Insights from fast neutron mutagenesis [abstract]. Molecular & Cellular Biology of the Soybean Conference, August 12-15, 2012, Des Moines, Iowa. Available: http://www.extension.iastate.edu/registration/events/soybean/speakeranchor.htm#speaker26.
From George Washington Carver to the genome: leveraging genetics and molecular biology to improve soybean - (Abstract Only)
Vance, C.P. 2012. From George Washington Carver to the genome: leveraging genetics and molecular biology to improve soybean [abstract]. Molecular & Cellular Biology of the Soybean Conference, August 12-15, 2012, Des Moines, Iowa. Available: http://www.extension.iastate.edu/registration/events/soybean/speakeranchor.htm#speaker1.
Characterization of the Linkage Group I seed protein QTL in soybean - (Book / Chapter)
Bolon, Y.E., Vance, C.P. 2012. Characterization of the Linkage Group I seed protein QTL in soybean. In: Wilson, R.F., editor. Designing Soybeans for 21st Century Markets. Urbana, Illinois: American Oil Chemists' Society. p. 175-195.
The transcriptome of common bean: nodules to beans - (Abstract Only)
O'Rourke, J.A., Iniguez, L.P., Bucciarelli, B., Woody, J.L., McClean, P.E., Jackson, S.A., Shoemaker, R.C., Hernandez, G., Vance, C.P. 2011. The transcriptome of common bean: nodules to beans [abstract]. XIV National Congress of Biochemistry and Plant Molecular Biology and 7th Symposium Mexico - USA, November 29-December 2, 2011, Campeche, Mexico. p. 17.
Transcriptome of common bean (Phaseolus vulgaris) through RNA-seq: nodulation, symbiotic nitrogen fixation, transcription factors - (Abstract Only)
Hernandez, G., Iniguez, L.P., O'Rourke, J.A., McClean, P., Shoemaker, R.C., Jackson, S., Vance, C.P. 2012. Transcriptome of common bean (Phaseolus vulgaris) through RNA-seq: nodulation, symbiotic nitrogen fixation, transcription factors [abstract]. Plant and Animal Genome XX Conference, January 14-18, 2012, San Diego, California. Available: http://pag.confex.com/pag/xx/webprogram/Paper1559.html.
Update on white lupin cluster roots acclimation to phosphorus deficiency - (Peer Reviewed Journal)
Cheng, L., Bucciarelli, B., Shen, J., Allan, D., Vance, C.P. 2011. Update on white lupin cluster roots acclimation to phosphorus deficiency. Plant Physiology. 156(3):1025-1032.
The transcriptome of common bean: more than nodulation - (Abstract Only)
O'Rourke, J.A., Iniguez, L.P., Bucciarelli, B., Woodey, J.L., McClean, P.E., Jackson, S.A., Shoemaker, R.C., Hernandez, G., Vance, C.P. 2011. The transcriptome of common bean: more than nodulation [abstract]. Plant Biology 2011, American Society of Plant Biologists Annual Meeting, August 6-10, 2011, Minneapolis, Minnesota. Available: http://abstracts.aspb.org/pb2011/public/M20/M2003.html.
Identifying genes involved in nodulation and symbiotic nitrogen fixation (SNF) in Phaseolus vulgaris using RNAseq technology - (Abstract Only)
Iniguez, L.P., O'Rourke, J.A., Bucciarelli, B., Woodey, J.L., Shoemaker, R.C., Hernandez, G., Vance, C.P. 2011. Identifying genes involved in nodulation and symbiotic nitrogen fixation (SNF) in Phaseolus vulgaris using RNAseq technology [abstract]. Plant Biology 2011, American Society of Plant Biologists Annual Meeting, August 6-10, 2011, Minneapolis, Minnesota. Available: http://abstracts.aspb.org/pb2011/public/P15/P15030.html.
Genetic architecture and regulatory networks in oilseed development - (Abstract Only)
Bolon, Y.E., Hyten, D.L., Orf, J.H., Vance, C.P., Muehlbauer, G.J. 2011. Genetic architecture and regulatory networks in oilseed development [abstract]. Plant Biology 2011, American Society of Plant Biologists Annual Meeting, August 6-10, 2011, Minneapolis, Minnesota. Available: http://abstracts.aspb.org/pb2011/public/P14/P14025.html.
Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean     Reprint Icon - (Peer Reviewed Journal)
Bolon, Y.E., Haun, W.J., Xu, W.W., Grant, D.M., Stacey, M.G., Nelson, R., Gerhardt, D.J., Jeddeloh, J.A., Stacey, G., Muehlbauer, G.J., Orf, J.H., Naeve, S.L., Stupar, R.M., Vance, C.P. 2011. Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean. Plant Physiology. 156(1):240-253.
Real-time RT-PCR profiling of transcription factors including 34 MYBs and signaling components in white lupin reveals their P status dependent and organ-specific expression     Reprint Icon - (Peer Reviewed Journal)
Yamagishi, M., Zhou, K., Osaki, M., Miller, S.S., Vance, C.P. 2011. Real-time RT-PCR profiling of transcription factors including 34 MYBs and signaling components in white lupin reveals their P status dependent and organ-specific expression. Plant and Soil Journal. 342(1-2):481-493.
Phenotypic and genomic analysis of a fast neutron mutant population resource in soybean - (Abstract Only)
Bolon, Y.E., Haun, W.J., Xu, W., Grant, D.M., Gerhardt, D.J., Albert, T.J., Richmond, T., Jeddeloh, J.A., Muehlbauer, G., Orf, J., Naeve, S., Stupar, R.M., Vance, C.P. 2011. Phenotypic and genomic analysis of a fast neutron mutant population resource in soybean [abstract]. XIX Plant and Animal Genome Conference Proceedings, January 15-19, 2011, San Diego, California. Abstract No. P390. Available: http://www.intl-pag.org/19/abstracts/P05f_PAGXIX_390.html.
Phosphorus as a critical macronutrient - (Book / Chapter)
Vance, C.P. 2011. Phosphorus as a critical macronutrient. In: Hawkesford, M., Barraclough, P., editors. The Molecular and Physiological Basis of Nutrient Use Efficiency in Crops. West Sussex, United Kingdom: John Wiley and Sons, Ltd. p. 229-261.
Genetic analysis of genome-wide transcriptional regulation through eQTL mapping in soybean - (Abstract Only)
Bolon, Y.E., Hyten, D.L., Orf, J., Vance, C.P., Muehlbauer, G. 2011. Genetic analysis of genome-wide transcriptional regulation through eQTL mapping in soybean [abstract]. XIX Plant and Animal Genome Conference Proceedings, January 15-19, 2011, San Diego, California. Abstract No. W550. Available: http://www.intl-pag.org/19/abstracts/W88_PAGXIX_550.html.
Alfalfa genomics: importance to sustainability and ecological services - (Abstract Only)
Vance, C.P. 2010. Alfalfa genomics: importance to sustainability and ecological services [abstract]. In: 2010 Minnesota Forage Research Symposium, November 17-18, 2010, St. Cloud, Minnesota. p. 9.
Identification of genes induced in proteoid roots of white lupin under nitrogen and phosphorus deprivation, with functional characterization of a formamidase     Reprint Icon - (Peer Reviewed Journal)
Rath, M., Salas, J., Parhy, B., Norton, R., Menakuru, H., Sommerhalter, M., Hatlstad, G., Kwon, J., Allan, D.L., Vance, C.P., Uhde-Stone, C. 2010. Identification of genes induced in proteoid roots of white lupin under nitrogen and phosphorus deprivation, with functional characterization of a formamidase. Plant and Soil. 334(1-2):137-150.
Last Modified: 8/22/2014
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