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United States Department of Agriculture

Agricultural Research Service

Research Project: DEFINING THE GENETIC DIVERSITY AND STRUCTURE OF THE SOYBEAN GENOME AND APPLICATIONS TO GENE DISCOVERY IN SOYBEAN AND WHEAT GERMPLASM

Location: Soybean Genomics and Improvement

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

A genome-wide association study in soybean - (Peer Reviewed Journal)
Hwang, E., Song, Q., Jia, G., Specht, J.E., Hyten, D.L., Costa, J., Cregan, P.B. 2014. A genome-wide association study in soybean. Biomed Central (BMC) Genomics. 15:1-12.
Identification of quantitative trait loci associated with drought tolerance in common bean using SNP markers     Reprint Icon - (Peer Reviewed Journal)
Mukeshimana, G., Beebe, S.E., Butare, L., Cregan, P.B., Kelly, J.D. 2014. Identification of quantitative trait loci associated with drought tolerance in common bean using SNP markers. Crop Science. 54:30-45.
Inheritance of soybean aphid resistance in 21 soybean plant introductions     Reprint Icon - (Peer Reviewed Journal)
Bonin, C.M., Kim, K., Cregan, P.B., Hill, C.B., Hartman, G.L., Diers, B.W. 2013. Inheritance of soybean aphid resistance in 21 soybean plant introductions. Theoretical and Applied Genetics. 127(1):43-50.
Soybean amino acid QTL detected using the Universal Soy Linkage Panel 1.0 with 1536 SNPs - (Peer Reviewed Journal)
Fallen, B.D., Nyinyi, C.N., Allen, F.L., Kopsell, D.A., Saxton, A.M., Chen, P., Kantsartzi, S.K., Cregan, P.B., Hyten, D.L., Pantalone, V.R. 2013. Soybean amino acid QTL detected using the Universal Soy Linkage Panel 1.0 with 1536 SNPs. Journal of Plant Genome Sciences. 1(3):68-79.
QTL analysis of unsaturated fatty acids in a recombinant inbred population of soybean - (Peer Reviewed Journal)
Jiang, G., Wang, X., Green, M., Scott, R.A., Hyten, D., Cregan, P.B. 2013. QTL analysis of unsaturated fatty acids in a recombinant inbred population of soybean. Molecular Breeding. 33(2):281-296.
Developing market class specific InDel markers from next generation sequence data in Phaseolus vulgaris L. - (Peer Reviewed Journal)
Mafi_Moghaddam, S., Song, Q., Mamidi, S., Schmutz, J., Lee, R., Cregan, P.B., Osorno, J.M., Mcclean, P.E. 2013. Developing market class specific InDel markers from next generation sequence data in Phaseolus vulgaris L.. Frontiers in Plant Genetics and Genomics. DOI:10.3389/fpls.2013.00251.
Mapping soybean aphid resistance genes in PI 567598B - (Peer Reviewed Journal)
Bales-Arcelo, C., Zhang, A., Liu, M., Mensah, C., Gu, C., Song, Q., Hyten, D., Cregan, P.B., Wang, D. 2013. Mapping soybean aphid resistance genes in PI 567598B. Theoretical and Applied Genetics. 126:2081-2091.
Genetic mapping and confirmation of quantitative trait loci for seed protein and oil contents and seed weight in soybean - (Peer Reviewed Journal)
Pathan, S.M., Vuong, T., Clark, K., Lee, J., Shannon, J.G., Roberts, C.A., Ellersieck, M.R., Burton, J.W., Cregan, P.B., Hyten, D.L., Nguyen, H.T., Sleper, D.A. 2013. Genetic mapping and confirmation of quantitative trait loci for seed protein and oil contents and seed weight in soybean. Crop Science. 53:765-774.
Development and evaluation of SoySNP50K, a high-density genotyping array for soybean - (Peer Reviewed Journal)
Song, Q., Hyten, D., Jia, G., Quigley, C.V., Fickus, E.W., Nelson, R.L., Cregan, P.B. 2013. Development and evaluation of SoySNP50K, a high-density genotyping array for soybean. PLoS Genetics. 8(1):e54985.
QTL analysis of saturated fatty acids in a population of recombinant inbred lines of soybean - (Peer Reviewed Journal)
Jiang, G., Wang, X., Green, M., Scott, R.A., Hyten, D., Cregan, P.B. 2012. QTL analysis of saturated fatty acids in a population of recombinant inbred lines of soybean. Molecular Breeding. 30:1163-1179.
Genome-wide association analysis identifies candidate genes associated with iron deficiency chlorosis in soybean - (Peer Reviewed Journal)
Mamidi, S., Chikara, S., Goos, R.J., Hyten, D.L., Moghaddam, S.M., Cregan, P.B., Mcclean, P.E. 2012. Genome-wide association analysis identifies candidate genes associated with iron deficiency chlorosis in soybean. The Plant Genome. 11:154-164.
Single nucleotide polymorphism (SNP) discovery in common bean - (Peer Reviewed Journal)
De Souza, T., De Barros, E.G., Bellato, C.M., Fickus, E.W., Cregan, P.B., Pastor Corrales, M.A. 2011. Single nucleotide polymorphism (SNP) discovery in common bean. Molecular Breeding. 30:419-428.
Stacking resistance alleles from wild and domestic soybean sources improves soybean cyst nematode resistance - (Peer Reviewed Journal)
Kim, M., Hyten, D.L., Niblack, T.L., Diers, B.W. 2011. Stacking resistance alleles from wild and domestic soybean sources improves soybean cyst nematode resistance. Crop Science. 51:934-943.
The composition and origins of intravarietal genomic heterogeneity in soybean - (Peer Reviewed Journal)
Haun, W.J., Hyten, D.L., Xu, W.W., Gerhardt, D.J., Albert, T.J., Richmond, T., Jeddeloh, J.A., Springer, N.M., Vance, C.P., Stupar, R. 2011. The composition and origins of intravarietal genomic heterogeneity in soybean. Plant Physiology. 155:645-655.
High-throughput SNP discovery and assay development in Common Bean - (Peer Reviewed Journal)
Hyten, D.L., Song, Q., Fickus, E.W., Choi, I., Quigley, C.V., Hwang, E., Pastor Corrales, M.A., Cregan, P.B. 2010. High-throughput SNP discovery and assay development in Common Bean. Biomed Central (BMC) Genomics. 11:475.
Abundance of SSR motifs and development of candidate polymorphic SSR markers (BARCSOYSSR_1.0) in soybean     Reprint Icon - (Peer Reviewed Journal)
Song, Q., Jia, G., Zhu, Y., Hwang, E., Hyten, D.L., Cregan, P.B., Grant, D.M., Nelson, R. 2010. Abundance of SSR motifs and development of candidate polymorphic SSR markers (BARCSOYSSR_1.0) in soybean. Crop Science. 50:1950-1960.
High-Throughput SNP Discovery through Deep Resequencing of a Reduced Representation Library to Anchor and Orient Scaffolds in the Soybean Whole Genome Sequence     Reprint Icon - (Peer Reviewed Journal)
Hyten, D.L., Cannon, S.B., Song, Q., Weeks, N.T., Fickus, E.W., Shoemaker, R.C., Specht, J.E., May, G.D., Cregan, P.B. 2010. High-Throughput SNP Discovery through Deep Resequencing of a Reduced Representation Library to Anchor and Orient Scaffolds in the Soybean Whole Genome Sequence. Biomed Central (BMC) Genomics. 11:38.
A high density integrated genetic linkage map of soybean and the development of a 1,536 Universal Soy Linkage Panel for QTL mapping - (Peer Reviewed Journal)
Hyten, D.L., Choi, I., Song, Q., Specht, J.E., Carter Jr, T.E., Shoemaker, R.C., Hwang, E., Matukumalli, L.K., Cregan, P.B. 2001. A high density integrated genetic linkage map of soybean and the development of a 1,536 Universal Soy Linkage Panel for QTL mapping. Crop Science. 50:960-968.
Single nucleotide polymorphisms in common bean: their discovery and genotyping using a multiplex detection system - (Peer Reviewed Journal)
Gaitan-Solis, E., Choi, I., Quigley, C.V., Cregan, P.B., Tohme, J. 2008. Single nucleotide polymorphisms in common bean: their discovery and genotyping using a multiplex detection system. The Plant Genome. 1:125-134.
QTL and Additive and Epistatic Effects for SCN Resistance in PI 437654 - (Peer Reviewed Journal)
Wu, X., Blake, S., Sleper, D.A., Shannon, J.G., Cregan, P.B., Nguyen, H.T. 2008. QTL and Additive and Epistatic Effects for SCN Resistance in PI 437654. Theoretical and Applied Genetics. 118:1093-1105.
Last Modified: 4/23/2014
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