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United States Department of Agriculture

Agricultural Research Service

Research Project: REDUCING SOYBEAN YIELD LOSSES THROUGH GENETIC IMPROVEMENT

Location: Crop Genetics Research Unit

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Genetics and mapping of quantitative traits for nodule number, weight, and size in soybean (Glycine max L. [Merr.]) - (Peer Reviewed Journal)
Hwang, S., Ray, J.D., Cregan, P.B., King, C., Davies, M., Purcell, L. 2013. Genetics and mapping of quantitative traits for nodule number, weight, and size in soybean (Glycine max L. [Merr.]). Euphytica. 195:419-434.
Evaluation of soybean commercial varieties for resistance to Phomopsis seed decay in the Mississippi Delta, 2012 - (Peer Reviewed Journal)
Li, S., Sciumbato, G. 2013. Evaluation of soybean commercial varieties for resistance to Phomopsis seed decay in the Mississippi Delta, 2012. Plant Disease Management Reports. 7:FC137.
QTL analysis of shoot ureide and nitrogen concentrations in soybean (Glycine max L. [Merr.]) - (Peer Reviewed Journal)
Hwang, S., King, C., Davies, M., Ray, J.D., Cregan, P.B., Purcell, L. 2013. QTL analysis of shoot ureide and nitrogen concentrations in soybean (Glycine max L. [Merr.]). Crop Science. 53:2421-2433.
Colonization of Clonostachys rosea on soybean root inoculated with Fusarium graminearum - (Peer Reviewed Journal)
Pan, F., Xue, G.A., Mclaughlin, B.N., Li, S., Xu, Y., Zhao, D., Qu, H. 2013. Colonization of Clonostachys rosea on soybean root inoculated with Fusarium graminearum. Acta Agriculture Scandinavica Section B – Soil & Plant Science. 63(6):564-569.
Evaluating soybean germplasm and commercial varieties for resistance to Phomopsis seed decay - (Abstract Only)
Li, S., Rupe, J., Holland, R., Steger, A., Chen, P., Sun, S., Sciumbato, G. 2013. Evaluating soybean germplasm and commercial varieties for resistance to Phomopsis seed decay. Phytopathology. 103:S2.80.
Quantification of leaf pigments in soybean (Glycine max (L.) Merr.) based on wavelet decomposition of hyperspectral features - (Peer Reviewed Journal)
(25-Apr-13)
First report of alternaria leaf spot of banana caused by Alternaria alternata in the United States - (Peer Reviewed Journal)
Parkunan, V., Li, S., Fonsah, E.G., Ji, P. 2013. First report of alternaria leaf spot of banana caused by Alternaria alternata in the United States. Plant Disease. 97(8):1116.
Screening soybean germplasm and commerical varieties for resistance to Phomopsis seed decay: results from 2012 trials - (Abstract Only)
Li, S., Sciumbato, G., Chen, P., Sun, S., Rupe, J., Holland, R., Steger, A. 2013. Screening soybean germplasm and commerical varieties for resistance to Phomopsis seed decay: results from 2012 trials. Southern Soybean Conference Proceedings. 21.
Research highlights on breeding for soybean disease resistance in the United States - (Abstract Only)
Li, S., Chen, P., Walker, D.R. 2013. Research highlights on breeding for soybean disease resistance in the United States. International Congress of Plant Pathology Abstracts and Proceedings. 43:98-99.
Research update on soybean Phomopsis seed decay and its primarily causal pathogen Phomopsis longicolla - (Abstract Only)
Li, S., Blum, B., Chen, P., Rupe, J., Wrather, A., Sciumbato, G. 2013. Research update on soybean Phomopsis seed decay and its primarily causal pathogen Phomopsis longicolla. Soybean Research World Conference Proceedings. D.5.
Agrobacterium tumefaciens-mediated transformation of the soybean pathogen Phomopsis longicolla - (Peer Reviewed Journal)
Li, S., Ridenour, J.B., Hirsch, R.L., Rupe, J.C., Bluhm, B.H. 2013. Agrobacterium tumefaciens-mediated transformation of the soybean pathogen Phomopsis longicolla . Journal of Microbiological Methods. 92:244-245.
Resistance to Phomopsis Seed Decay in soybean - (Review Article)
Li, S., Chen, P. 2013. Resistance to Phomopsis Seed Decay in soybean. International Scholarly Research Network (ISRN). 2013:1-8.
Relationship between aflatoxoin contamination and physiological responses of corn plants under drought and heat stress - (Peer Reviewed Journal)
Kebede, H.A., Abbas, H.K., Fisher, D.K., Bellaloui, N. 2012. Relationship between aflatoxoin contamination and physiological responses of corn plants under drought and heat stress. Toxins. 4:1385-1403.
Effects of Fusarium virguliforme phytotoxin on soybean gene expression suggests a multi-dimensional defense approach - (Peer Reviewed Journal)
Radwan, O., Li, M., Calla, B., Li, S., Hartman, G.L., Clough, S.J. 2013. Effects of Fusarium virguliforme phytotoxin on soybean gene expression suggests a multi-dimensional defense approach. Molecular Plant Pathology. 14 (3):293-307.
First report of Phomopsis Seed Decay of soybeans caused bt Phomopsis longicolla in South China - (Peer Reviewed Journal)
Shan, Z., Li, S., Liu, Y., Yang, Z., Yang, C., Sha, A., Chen, H., Chen, S., Zhou, X. 2012. First report of Phomopsis Seed Decay of soybeans caused bt Phomopsis longicolla in South China. Plant Disease. 96 (11):1693.
A new gene that controls seed coat wrinkling in soybean - (Peer Reviewed Journal)
Kebede, H.A., Smith, J.R., Ray, J.D. 2012. A new gene that controls seed coat wrinkling in soybean. Euphytica. 189:309-320.
Co-inoculation with rhizobia and arbuscular mycorrhizal fungi inhibited soybean red crown rot: from field study to plant defense-related gene expression analysis - (Peer Reviewed Journal)
Gao, X., Lu, X., Wu, M., Pan, R.Q., Tian, J., Li, S., Liao, H. 2012. Co-inoculation with rhizobia and arbuscular mycorrhizal fungi inhibited soybean red crown rot: from field study to plant defense-related gene expression analysis. PLoS One. 7(3):e33977.
Identification of a new soybean rust resistance gene in PI 567102B - (Peer Reviewed Journal)
Li, S., Smith, J.R., Ray, J.D., Frederick, R.D. 2012. Identification of a new soybean rust resistance gene in PI 567102B. Theoretical and Applied Genetics. 125:133-142.
Evaluation of maturity group III soybean lines for resistance to purple seed stain in Mississippi, 2010 - (Peer Reviewed Journal)
Li, S., Sciumbato, G. 2012. Evaluation of maturity group III soybean lines for resistance to purple seed stain in Mississippi, 2010. Plant Disease. doi:10.1094/PDMR06: ST004.
Reaction of current commerical soybean cultivars in the mid-southern US to Soybean mosaic virus (SMV) - (Peer Reviewed Journal)
Shakiba, E., Chen, P., Gergerich, R., Li, S., Dombek, D., Brye, K., Shi, A. 2013. Reaction of current commerical soybean cultivars in the mid-southern US to Soybean mosaic virus (SMV). Crop Science. 52 (5):1990-1997.
Reaction of mid-southern U.S. southern cultivars to Bean pod mottle virus and Tobacco ringspot virus - (Peer Reviewed Journal)
Skakiba, E., Chen, P., Gergerich, R., Li, S., Shi, A. 2012. Reaction of mid-southern U.S. southern cultivars to Bean pod mottle virus and Tobacco ringspot virus. Crop Science. 52(5):1980-1989.
Mapping a new gene that controls seed coat wrinkling in soybean - (Abstract Only)
Kebede, H.A., Smith, J.R., Ray, J.D. 2012. Mapping a new gene that controls seed coat wrinkling in soybean. Plant and Animal Genome Conference. January 14-18, 2012. http://pag.confex.com/pag/xx/webprogram/Paper2473.html.
Evaluation of corn genotypes for drought and heat stress tolerance using physiological measurements and a microcontroller-based monitoring system - (Abstract Only)
Kebede, H.A., Fisher, D.K., Young, L.D. 2012. Evaluation of corn genotypes for drought and heat stress tolerance using physiological measurements and a microcontroller-based monitoring system. American Society of Agronomy Branch Meeting. http://a-c-s.confex.com/crops/2012srb/webprogram/Paper70164.html.
Fungicide, herbicide, and genotype effects on charcoal rot and phomopsis seed decay in soybeans - (Peer Reviewed Journal)
Cross, C., Wrather, A., Fothegill, K., Shannon, G., Li, S., Shumway, C., Rupe, J. 2012. Fungicide, herbicide, and genotype effects on charcoal rot and phomopsis seed decay in soybeans. Plant Disease. 96 (8): 1154-1158.
Analysis of Fusarium populations in a soybean field under different fertilization management by real-time quantitative PCR and denaturing gradient gel electrophoresis - (Peer Reviewed Journal)
Wei, W., Xu, Y., Li, S., Lui, J., Han, X., Li, W., Ji, P. 2012. Analysis of Fusarium populations in a soybean field under different fertilization management by real-time quantitative PCR and denaturing gradient gel electrophoresis. Journal of Plant Pathology. 94(1):119-126.
Diversity and implications of soybean stem nitrogen concentration - (Peer Reviewed Journal)
(04-Oct-11)
Genomic location of a gene conditioning a miniature phenotype in soybean - (Peer Reviewed Journal)
Ray, J.D., Smith, J.R., Taliercio, E.W., Fritschi, F.B. 2011. Genomic location of a gene conditioning a miniature phenotype in soybean. Plant Biology. 55:26-32.
Determination of moisture deficit and heat stress tolerance in corn using physiological measurements and a low-cost microcontroller-based monitoring system - (Peer Reviewed Journal)
Kebede, H.A., Fisher, D.K., Young, L.D. 2011. Determination of moisture deficit and heat stress tolerance in corn using physiological measurements and a low-cost microcontroller-based monitoring system. Journal of Agronomy and Crop Science. 198:118-129.
Evaluation of maturity group IV soybean lines for resistance to purple seed stains in Mississippi 2010 - (Peer Reviewed Journal)
Li, S., Sciumbato, G. 2011. Evaluation of maturity group IV soybean lines for resistance to purple seed stains in Mississippi 2010. Plant Disease Management Reports. 5:FC123.
Reaction of maturity group V soybean lines to purple seed stains in Mississippi 2010 - (Peer Reviewed Journal)
Li, S., Sciumbato, G. 2011. Reaction of maturity group V soybean lines to purple seed stains in Mississippi 2010. Plant Disease Management Reports. doi:10.1094/PDMR05:FC122.
Resistance to phomopsis seed decay identified in maturity group V soybean plant introductions - (Peer Reviewed Journal)
Li, S., Smith, J.R., Nelson, R.L. 2011. Resistance to phomopsis seed decay identified in maturity group V soybean plant introductions. Crop Science. 51:2681-2688.
Effects of metabolites of Gliocladium Roseum on egg hatch and juvenile mortality of Meloidogyne incognita - (Peer Reviewed Journal)
Wang, L., Xu, Y., Li, S., Li, C., Xue, A.G. 2011. Effects of metabolites of Gliocladium Roseum on egg hatch and juvenile mortality of Meloidogyne incognita. Soybean Science. 30:818-822.
Identification of soybean accessions with resistance to Phomopsis seed decay: joint effort from USDA and university scientists - (Abstract Only)
Li, S., Chen, P., Rupe, J., Wrather, A., Sciumbato, G., Smith, J.R., Nelson, R.L. 2011. Identification of soybean accessions with resistance to Phomopsis seed decay: joint effort from USDA and university scientists. APS Annual Meeting. 101(6):S103.
Genetic resistance to soybean rust in PI 567099A is at or near the Rpp3 locus - (Peer Reviewed Journal)
Ray, J.D., Smith, J.R., Morel, W., Bogado, N., Walker, D.R. 2011. Genetic resistance to soybean rust in PI 567099A is at or near the Rpp3 locus. Journal of Crop Improvement. 25(3):219-231.
Assessment of the effects of Hirsutella minnesotensis on Soybean Cyst Nematode and growth of soybean - (Peer Reviewed Journal)
Qian, H., Li, S., Xu, Y., Li, C., Sun, Y. 2011. Assessment of the effects of Hirsutella minnesotensis on Soybean Cyst Nematode and growth of soybean. Soybean Science. 30(2):266-271.
Phomopsis seed decay of soybean - (Book / Chapter)
Li, S. 2011. Phomopsis seed decay of soybean. Intech. 277-292.
Reaction of maturity group III soybean plant introductions to Phomopsis seed decay in Arkansas Mississippi and Missouri 2009 - (Peer Reviewed Journal)
Li, S., Wrather, A., Rupe, J., Chen, P. 2010. Reaction of maturity group III soybean plant introductions to Phomopsis seed decay in Arkansas, Mississippi and Missouri, 2009. Plant Disease Management Reports. 4:ST036.
Reaction of maturity group IV soybean plant introductions to Phomopsis Seed Decay in Arkansas Mississippi and Missouri 2009 - (Peer Reviewed Journal)
Li, S., Rupe, J., Chen, P., Wrather, A. 2010. Reaction of maturity group IV soybean plant introductions to Phomopsis Seed Decay in Arkansas, Mississippi, and Missouri, 2009. Plant Disease Management Reports. 4:ST035
Reaction of maturity group V soybean plant introductions to Phomopsis Seed Decay in Arkansas Mississippi and Missouri 2009 - (Peer Reviewed Journal)
Li, S., Chen, P., Rupe, J., Wrather, A. 2010. Reaction of Maturity Group V Soybean Plant Introductions to Phomopsis Seed Decay in Arkansas, Mississippi, and Missouri, 2009. Plant Disease Management Reports. 4:ST034.
Effects of Conventional and Conservational Tillage Systems on Soybean Growth and Soil Microbial Populations - (Peer Reviewed Journal)
Meng, J., Xu, Y., Li, S., Li, C., Zhang, X., Chen, P. 2010. Effects of Conventional and Conservational Tillage Systems on Soybean Growth and Soil Microbial Populations. Journal of Crop Improvement. 337-348.
Screening germplasm for resistance to phomopsis seed decay in soybean - (Abstract Only)
Li, S., Rupe, J., Chen, P., Wrather, A. 2010. Screening germplasm for resistance to phomopsis seed decay in soybean. Phytopathology. 100:S70.
Agressiveness of Phomopsis longicolla and other Phomopsis species on soybean - (Peer Reviewed Journal)
Li, S., Hartman, G.L., Boykin, D.L. 2010. Agressiveness of Phomopsis longicolla and other Phomopsis species on soybean. Plant Disease. 94:1035-1040.
Research Update on Screening Germplasm and Breeding for Resistance to Phomopsis Seed Decay in Soybean - (Abstract Only)
Li, S., Wrather, A., Chen, P., Rupe, J. 2010. Research Update on Screening Germplasm and Breeding for Resistance to Phomopsis Seed Decay in Soybean. Abstracts of the 37th Annual Meeting of the Southern Disease Workers, 2010. p.24
Stachbotrys Root Rot - (Book / Chapter)
(02-Sep-09)
Phomopsis Seed Decay - (Book / Chapter)
(02-Sep-09)
First Report of Soybean Yellow Mottle Mosaic Virus in Soybean in North America - (Peer Reviewed Journal)
Li, S., Moon, J.S., Lee, S.H., Domier, L.L. 2009. First Report of Soybean Yellow Mottle Mosaic Virus in Soybean in North America. Plant Disease. 93 (11):1214.
Sugarcane Response to High Water Tables and Intermittent Flooding - (Peer Reviewed Journal)
Ray, J.D., Sinclair, T.R., Glaz, B.S. 2010. Sugarcane Response to High Water Tables and Intermittent Flooding. Journal of Crop Improvement. 24:12-27.
The Importance of Phenolic Metabolism to Limit the Growth of Phakopsora pachyrhizi     Reprint Icon - (Peer Reviewed Journal)
Lygin, A., Li, S., Vittal, R., Hartman, G.L., Widholm, J., Lozovaya, V. 2009. The Importance of Phenolic Metabolism to Limit the Growth of Phakopsora pachyrhizi. Phytopathology. 99:1412-1420.
Polygenic Inheritance of Canopy Wilting in Soybean [Glycine max (L.) Merr.] - (Peer Reviewed Journal)
Charlson, D.V., Bhatnagar, S., King, C.A., Ray, J.D., Sneller, C.H., Carter Jr, T.E., Purcell, L.C. 2009. Polygenic Inheritance of Canopy Wilting in Soybean [Glycine max (L.) Merr.]. Theoretical and Applied Genetics. DOI 10.1007/s11033-009-9496-4
Reaction of Soybean Cultivars to Phomopsis Seed Decay in the Mississippi Delta, 2007 - (Peer Reviewed Journal)
Li, S., Boykin, D.L., Sciumbato, G., Wrather, A., Shannon, G., Sleper, D. 2009. Reaction of Soybean Cultivars to Phomopsis Seed Decay in the Mississippi Delta, 2007. Plant Disease Management Reports. DOI:10.1094/PDMR03:FC096.
Evaluation of Soybean Cultivars for Resistance to Phomopsis longicolla - (Abstract Only)
Li, S., Boykin, D.L., Sciumbato, G., Wrather, A., Shannon, G., Sleper, D. 2009. Evaluation of Soybean Cultivars for Resistance to Phomopsis longicolla. Phytopathology. 99(5):S72
Glyceollin and Lignin Limit the Growth of Phakopsora pachyrhizi - (Abstract Only)
Lygin, A., Li, S., Vittal, R., Hartman, G.L., Widholm, J., Lozovaya, V. 2009. Glyceollin and Lignin Limit the Growth of Phakopsora pachyrhizi. Phytopathology. 99(5):S77
Evaluation of Selected Genotypes of Soybean for Resistance to Phakopsora pachyrhizi - (Peer Reviewed Journal)
Li, S., Young, L.D. 2009. Evaluation of Selected Genotypes of Soybean for Resistance to Phakopsora pachyrhizi. Plant Health Progress. doi:1094/PHP-2009-0615-01-RS
Genetics and mapping of adult plant rust resistance in soybean PI 587886 and PI 587880A - (Peer Reviewed Journal)
Ray, J.D., Wilfriod, M., Smith, J.R., Frederick, R.D., Miles, M.R. 2009. Genetics and mapping of adult plant rust resistance in soybean PI 587886 and PI 587880A. Theoretical and Applied Genetics. 119:271-280.
Research Highlights on Soybean Phomopsis Seed Decay in the U.S: Pathogen Characterization, Germplasm Screening, and Genetic Resistance - (Abstract Only)
Li, S., Chen, P., Hartman, G.L., Smith, J.R., Nelson, R.L. 2009. Research Highlights on Soybean Phomopsis Seed Decay in the U.S: Pathogen Characterization, Germplasm Screening, and Genetic Resistance. Soybean Research World Conference Proceedings. P199:91-92
Enviromental Effects on Oleic Acid in Soybean Seed Oil of Plant Introductions with Elevated Oleic Concentration - (Peer Reviewed Journal)
Lee, J., Woolard, M., Sleper, D.A., Smith, J.R., Pantalone, V.R., Nyinyi, C.N., Cardinal, A., Shannon, G.J. 2009. Enviromental Effects on Oleic Acid in Soybean Seed Oil of Plant Introductions with Elevated Oleic Concentration. Crop Science. 49:1762-1768.
Evaluation of Soybean Cultivars for Resistance to Soybean Phomopsis Seed Decay in the Mississippi Delta - (Abstract Only)
Li, S., Boykin, D.L., Sciumbato, G., Wrather, A., Shannon, G., Sleper, D. 2009. Evaluation of Soybean Cultivars for Resistance to Soybean Phomopsis Seed Decay in the Mississippi Delta. In Abstracts of the 36th Annual Meeting of the Southern Disease Workers, (Pensacola Beach, FL, March 11-12, 2009). p.5
Identification of New Sources of Resistance to Soybean Rust - (Book / Chapter)
Li, S. 2009. Identification of New Sources of Resistance to Soybean Rust. Plant Pathology in the 21st Century. pp.400
Ligninolytic Activity of Fusarium virguliforme (SYN. F. solani f. sp. glycines), the Causal Agent of Soybean Sudden Death Syndrome - (Abstract Only)
Lygin, A., Li, S., Zernova, O., Hartman, G.L., Widholm, J., Lozovaya, V. 2008. Ligninolytic Activity of Fusarium virguliforme (SYN. F. solani f. sp. glycines), the Causal Agent of Soybean Sudden Death Syndrome. International Fusarium Workshop. 0:10
Last Modified: 9/22/2014
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