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Research Project: GENOMICS AND BIOINFORMATICS RESEARCH IN AGRICULTURALLY IMPORTANT ORGANISMS

Location: Genomics and Bioinformatics Research Unit

Project Number: 6402-21310-003-00
Project Type: Appropriated

Start Date: May 20, 2008
End Date: May 19, 2013

Objective:
Utilization and development of bioinformatic and genomic tools/information to support structural analysis of plant and animal genomes. This includes the generation of DNA sequences and subsequent analysis. Development and implementation of DNA markers for development of superior cultivars (e.g., superior yield, improved quality, or resistance to the biotic or abiotic factors) or germplasm/population/species characterization. Both marker data and DNA sequences will be used for genome structure analysis.

Approach:
The Genomics and Bioinformatics Research Unit conducts research in the area of genomics and bioinformatics for an array of species and topics. It also acts as a fully integrated component of the Mid South Area by providing genomics research support for an array of technologies and research projects. The support includes, but is not limited to high throughput DNA sequencing, gene expression analysis, bioinformatics, DNA marker development, BAC fingerprinting and high throughput genotyping with DNA marker. The centralization of these operations assures that all research projects in the MSA that could benefit from these genomic tools have access to the technology, that there is no unnecessary duplication of equipment within the Area, and there is maximum utilization and conservation of funding.

   

 
Project Team
Scheffler, Brian
Scheffler, Jodi
Erpelding, John
Percy, Richard
Stetina, Salliana - Sally
 
Project Annual Reports
  FY 2012
  FY 2011
  FY 2010
  FY 2009
 
Publications
   Publications
 
Related National Programs
  Aquaculture (106)
  Plant Genetic Resources, Genomics and Genetic Improvement (301)
 
Related Projects
   DEVELOPMENT OF COTTON LEAF CURL VIRUS (CLCUV) DIAGNOSTIC TOOLS AND MONITORING OF CLCUV
   STABLE INTROGRESSION OF COTTON LEAF CURL VIRUS RESISTANCE INTO CULTIVATED COTTON AND GERMPLASM ENHANCEMENT
   INCREASE OF COTTON GERMPLASM WITH EMPHASIS ON NON-CULTIVATED SPECIES FOR EXAMINATION OF IMPORTANT DISEASE RESISTANCE TRAITS
   Identification and Introgression of Cotton Leaf Curl Virus Resistance into Cultivated Cotton
   ENHANCING COTTON GERMPLASM, IMPROVING RESISTANCE TO COTTON LEAF CURL VIRUS AND SUPPORTING COTTON BEST MANAGEMENT PRACTICES FOR SMALL FARMERS
   IDENTIFICATION OF EST-SSR AND SNP MARKERS FOR LINKAGE MAPPING IN DIOSCOREA ALATA L.(YAM)
   Mississippi Rice Variety Acceleration Breeding Project Proposal - Phase 2
   GENOMIC ANALYSIS OF CULTIVATED COTTON AND RELATED WILD SPECIES
   INVESTIGATION OF THE PEANUT GENOME
   BIOCOMPUTATIONAL TOOLS FOR ANALYSIS OF COMPLEX AGRICULTURAL GENOMES
   USING BIOINFORMATIC TOOLS TO INVESTIGATE THE BASIS OF RESISTANCE/TOLERANCE IN COTTON SPECIES TO COTTON LEAF CURL VIRUS (CLCUV)
   PAKISTAN COTTON LEAF CURL VIRUS PROJECT
   DEVELOPMENT OF DIAGNOSTIC SCREENING TOOLS AND EVALUATION OF TRANSGENIC TOMATO PLANTS FOR COTTON LEAF CURL VIRUS (CLCUV) RESISTANCE
   IMPROVING RESISTANCE TO COTTON LEAF CURL VIRUS (CLCUV) AND SUPPORTING COTTON BEST MANAGEMENT PRACTICES FOR SMALL FARMERS
   A physical, genetic, and functional sequence assembly of chromosomes 12 and 26 Gossypium hirsutum L. cv. TM-1 using mapped BACs (#13-603)
   Utilization of the Cotton and Genome Sequence of Gossypium Barbadense for Discovery of Rare Alleles in Upland Cotton Derived From G. Barbadense
 
 
Last Modified: 05/21/2013
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