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United States Department of Agriculture

Agricultural Research Service

Research Project: DEVELOPMENT AND CHARACTERIZATION OF GENETIC RESOURCES FOR AGRONOMIC AND QUALITY TRAITS USING GENOMIC TOOLS Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Mapping and validation of quantitative trait loci associated with concentrations of 16 elements in unmilled rice grain - (Peer Reviewed Journal)
Zhang, M., Pinson, S.R., Tarpley, L., Huang, X., Lahner, B., Yakubova, E., Baxter, I.R., Guerinot, M., Salt, D.E. 2014. Mapping and validation of quantitative trait loci associated with concentrations of 16 elements in unmilled rice grain. Theoretical and Applied Genetics. Vol 127: 137-165.
Free and bound total phenolics, procyanidin and anthocyanin profiles and their antioxidant capacities in whole grain rice (Oryza sativa L.) of different bran colors - (Peer Reviewed Journal)
Min, B., Gu, L., McClung, A.M., Bergman, C.J., Chen, M. 2012. Free and bound total phenolics, procyanidin and anthocyanin profiles and their antioxidant capacities in whole grain rice (Oryza sativa L.) of different bran colors. Food Chemistry. 133:715-722.
Variation in grain arsenic assessed in a diverse panel of rice (Oryza sativa)in multiple sites - (Peer Reviewed Journal)
Norton, G.J., Pinson, S.R., Alexander, J., McKay, S., Hansen, H., Duan, G., Islam, M., Islam, S., Stroud, J.L., Zhao, F., McGrath, S.P., Zhu, Y., Lahner, B., Yakubova, E., Guerinot, M., Tarpley, L., Eizenga, G.C., Salt, D.E., Meharg, A.A., Price, A.H. 2012. Variation in grain arsenic assessed in a diverse panel of rice grown in multiple sites. New Phytologist. 193:650–664. doi: 10.1111/j.1469-8137.2011.03983.x.
Enhanced molybdenum uptake in rice - (Abstract Only)
Ratnaprabha, R., Pinson, S.R., Tarpley, L. 2011. Enhanced molybdenum uptake in rice [abstract]. American Society of Agronomy Meetings, Oct. 16-17, 2011, San Antonio, TX. Available:http://a-c-s.confex.com/crops/2011am/webprogram/Paper66112.html
Elemental-composition and plant-trait patterns in an ionomically and genetically diverse set of rice germplasm - (Abstract Only)
Pinson, S.R., Tarpley, L., Yeater, K.M., Yan, W., Guerinot, M., Salt, D.E. 2011. Elemental-composition and plant-trait patterns in an ionomically and genetically diverse set of rice germplasm [abstract]. In: Proceedings of American Society of Agronomy Meetings, October 16-17, 2011, San Antonio, TX. Available: http://a-c-s.confex.com/crops/2011am/webprogram/Paper66112.html.
Can Seedling Ionomics Predict Rice Grain Ionomics? - (Abstract Only)
Ratnaprabha, R., Pinson, S.R., Tarpley, L. 2011. Can Seedling Ionomics Predict Rice Grain Ionomics? American Society of Agronomy Meetings. Paper 66150.
Registration of 'Jazzman' aromatic long-grain rice - (Peer Reviewed Journal)
Sha, X., Linscombe, S., Jodari, F., Chu, O., Groth, D., Blanche, S., Harrell, D., White, L., Oard, J., Chen, M., Theunissen, S., Blake, H. 2011. Registration of 'Jazzman' aromatic long-grain rice. Journal of Plant Registrations. 5:304-308.
Comparative ionomes of rice leaves and seeds - (Abstract Only)
Ratnaprabha, Pinson, S.R., Salt, D.E., Tarpley, L. 2011. Comparative ionomes of rice leaves and seeds [abstract]. Botanical Society of America for Poster Presentation at Annual Conference, July 9-13, 2011, St. Louis Missouri. p. 695.
Applied genetics: Speeding the development of improved varieties by developing breeding tools and genetic knowledge - (Experiment Station)
Pinson, S.R., Tabien, R., Tarpley, L. 2011. Applied genetics: Speeding the development of improved varieties by developing breeding tools and genetic knowledge. Texas Rice Special Section, Highlighting Research in 2011. p. I-II.
Can seedling mineral composition predict rice grain nutritional value? - (Experiment Station)
Ratnaprabha, R., Pinson, S.R., Salt, D.E., Tarpley, L. 2011. Can seedling mineral composition predict rice grain nutritional value? Texas Rice Special Section, Highlighting Research in 2011. p. XIII-XIV.
Polyphenols and antioxidant capacity: Rice versus other common cereal grains - (Experiment Station)
Chen, M. 2011. Polyphenols and antioxidant capacity: Rice versus other common cereal grains. Texas Rice Special Section, Highlighting Research in 2011. p. VII-VIII.
Phytochemicals and antioxidant capacity in rice brans of different color - (Peer Reviewed Journal)
Min, B., McClung, A.M., Chen, M.H. 2011. Phytochemicals and antioxidant capacity in rice brans of different color. Journal of Food Science. 76:C117-126.
Genetic Diversity for Concentration of Sixteen Mineral Elements Among Diverse Rice Germplasm - (Abstract Only)
Pinson, S.R., Tarpley, L., Baxter, I.R., Zhang, M., Guerinot, M., Punshon, T., Salt, D.E. 2010. Genetic Diversity for Concentration of Sixteen Mineral Elements Among Diverse Rice Germplasm. In: Proceedings of the American Society of Agronomy Meeting, Oct. 31 - Nov. 4, 2010, Long Beach, CA. 296-1.
Making rice even healthier! - (Experiment Station)
Pinson, S.R., Tarpley, L. 2010. Making rice even healthier! Texas Rice Experiment Station Bulletins. X(8):1,6-8. Available: http://beaumont.tamu.edu/eLibrary/Newsletter/2010_October_Newsletter.pdf.
Efficacy of Using a Giant Embryo Mutant for Enhancing Whole Grain Rice Health Beneficial Properties     Reprint Icon - (Abstract Only)
Bergman, C.J., Chen, M., Champagne, E.T., Grimm, C.C., Mcclung, A.M. 2010. EFFICACY OF USING A GIANT EMBRYO MUTANT FOR ENHANCING WHOLE GRAIN RICE HEALTH BENEFICIAL PROPERTIES. Meeting Abstract. 4487.
Effect of steam-cooking and parboiling on phenolics and antioxidant capacities of red and purple rice cultivars     Reprint Icon - (Abstract Only)
Chen, M., Min, B., Mcclung, A.M. 2010. Effect of steam-cooking and parboiling on phenolics and antioxidant capacities of red and purple rice cultivars. Cereal Foods World. 55:A21.
Metabolomic and functional genomic analyses reveal varietal differences in bioactive compounds of cooked rice - (Peer Reviewed Journal)
Heuberger, A.L., Lewis, M.R., Chen, M., Brick, M.A., Leach, J.E., Ryan, E.P. 2010. Metabolomic and functional genomic analyses reveal varietal differences in bioactive compounds of cooked rice. PLoS One 5:e12915.
Heat-stability of health-beneficial phytonutrients/antioxidants in rice - (Experiment Station)
Chen, M. 2010. Heat-stability of health-beneficial phytonutrients/antioxidants in rice. Texas Experiment Station Field Day Handout.
Development of three allele-specific codominant rice Waxy gene PCR markers suitable for marker assisted selection of amylose content and paste viscosity - (Peer Reviewed Journal)
Chen, M., Fjellstrom, R.G., Christensen, E.F., Bergman, C.J. 2010. Development of three allele-specific codominant rice Waxy gene PCR markers suitable for marker assisted selection of amylose content and paste viscosity. Molecular Breeding. 26:513-523.
Early generation selection for rice fissure resistance proves effective and indicates a fissure resistance gene on chromsome 1 - (Proceedings)
Pinson, S.R., Jia, Y., Gibbons, J. 2010. Early generation selection for rice fissure resistance proves effective and indicates a fissure resistance gene on chromsome 1. Rice Technical Working Group Meeting Proceedings. CDROM.
Phytonutrients in rices of different bran color - (Proceedings)
Min, B., Mcclung, A.M., Chen, M. 2010. Phytonutrients in rices of different bran color. 33rd ice Technical Working Group Meeting Proceedings, Feb. 22-25, 2010. CD ROM.
Development of three allele-specific co-Dominant PCR markers suitable for marker-assisted selection of amylose class and paste viscosity of rice - (Proceedings)
Chen, M., Fjellstrom, R.G., Christensen, E.F., Bergman, C.J. Development of three allele-specific co-Dominant PCR markers suitable for marker-assisted selection of amylose class and paste viscosity of rice. Poster Presentation, Rice Technical Working Groups, Biloxi, MS, Feb. 22, 2010.
Genetic diversity for grain mineral concentrations among diverse rice germplasm grown gnder aerobic and anaerobic field conditions - (Proceedings)
Pinson, S.R., Tarpley, L., Salt, D.E., Zhang, M., Baxter, I., Guerinot, M.L., Punshon, T. 2010. Genetic diversity for grain mineral concentrations among diverse rice germplasm grown gnder aerobic and anaerobic field conditions. Rice Technical Working Group Meeting, Biloxi, MS, Feb. 22-25, 2010. CDROM.
Spatially resolved elemental mapping of two U.S. rice core collection grain accessions with diverse arsenic accumulation characteristics via synchrotron x-Ray fluorescence microscopy (SXRF) - (Proceedings)
Punshon, T., Guerinot, M.L., Lanzirotti, A., Pinson, S.R., Tarpley, L., Salt, D.E., Zhang, M., Baxter, I. 2010. Spatially resolved elemental mapping of two U.S. rice core collection grain accessions with diverse arsenic accumulation characteristics via synchrotron x-Ray fluorescence microscopy (SXRF). Rice Technical Working Group Meeting Proceedings, Biloxi, MS, Feb. 22-25, 2010. CDROM.
A population of ‘TeQing’-into-‘Lemont’ chromosome segment substitution lines supports QTL discovery, fine-mapping, and determination of breeding values - (Proceedings)
Pinson, S.R., Liu, G., Jia, M.H., Jia, Y., Fjellstrom, R.G., Sharma, A., Yang, Y., Tabien, R.E., Li, Z. 2009. A population of ‘TeQing’-into-‘Lemont’ chromosome segment substitution lines supports QTL discovery, fine-mapping, and determination of breeding values. 6th International Rice Genetics Symposium on Nov. 16-18, 2009, Manilla, Philippines. P9-1 Page 215.
Natural antioxidants and antioxidant capacity of dark colored bran rice - (Experiment Station)
Min, B., McClung, A.M., Chen, M. 2009. Natural antioxidants and antioxidant capacity of dark colored bran rice. Texas Rice, Highlighting Research in 2009. pp. VII-VIII.
Development of new marker protocols that identify Waxy gene DNA sequence variations associated with rice grain quality traits - (Experiment Station)
Chen, M. 2009. Development of new marker protocols that identify Waxy gene DNA sequence variations associated with rice grain quality traits. Texas Experiment Station Field Day Handout. Available: http://beaumont.tamu.edu/eLibrary_default.htm
Addressing the dilemmas of measuring amylose in rice - (Peer Reviewed Journal)
Fitzgerald, M.A., Bergman, C.J., Ressurreccion, A.P., Moller, J., Jimenez, R., Reinke, R.F., Martin, M., Blanco, P., Molina, F., Chen, M., Kuri, V., Romero, M.V., Habibi, F., Umemoto, T., Jongdee, S., Graterol, E., Reddy, K.R., Bassinello, P.Z., Sivakami, R., Rani, N.S., Das, S., Wang, Y., Indrassi, S.D., Ramli, A., Rauf, A., Dipti, S.S., Xie, L., Lang, N.T., Singh, P., Toro, D.C., Tavasoli, F. 2009. Addressing the dilemmas of measuring amylose in rice. Cereal Chemistry. 86(5):492-498.
The Rice Quality Program of the USDA-ARS Rice Research Unit - (Experiment Station)
Chen, M. 2009. The Rice Quality Program of the USDA-ARS Rice Research Unit. Experiment Station Bulletins. Texas Rice. Vol. IV. p. 7. Available: http://beaumont.tamu.edu/elibrary_default.htm
Phytochemical profiles and iron chelating capability of rice varieties - (Abstract Only)
Min, B., McClung, A.M., Chen, M. 2009. Phytochemical profiles and iron chelating capability of rice varieties [abstract]. Institute of Food Technology, June 6-9, 2009, Anaheim, CA. p. 32.
Analysis of genotypic diversity in esterase activity of rice bran - (Proceedings)
Chen, M., Yan, W. 2008. Analysis of genotypic diversity in esterase activity of rice bran. In: Proceedings of the United States Japan Natural Resources Protein Panel. p. 83-84.
Last Modified: 4/23/2014
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