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United States Department of Agriculture

Agricultural Research Service

Research Project: SOYBEAN GENETIC MANAGEMENT AND UTILIZATION

Location: Soybean/maize Germplasm, Pathology, and Genetics Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Increasing CO2 threatens human nutrition - (Peer Reviewed Journal)
Myers, S.S., Zanobetti, A., Kloog, I., Huybers, P., Leakey, A.D.B., Bloom, A.J., Carlisle, E., Dietterich, L.H., Fitzgerald, G., Hasegawa, T., Holbrook, N.M., Nelson, R.L., Ottman, M.J., Raboy, V., Sakai, H., Sartor, K.A., Schwartz, J., Seneweera, S., Tausz, M., Usui, Y. 2014. Increasing CO2 threatens human nutrition. Nature. 150:139 DOI:10.1038/nature13179.
Registration of high yielding soybean germplasm line LG06-5798 - (Peer Reviewed Journal)
Nelson, R.L., Johnson, E.O., Shannon, J.G., Mian, R.M., Diers, B.W. 2013. Registration of high yielding soybean germplasm line LG06-5798. Journal of Plant Registrations. 8:102-105.
14-3-3 Proteins SGF14c and SGF14l play critical roles during soybean nodulation - (Peer Reviewed Journal)
Radwan, O., Wu, X., Govindarajulu, M., Libault, M., Neece, D.J., Berg, H.R., Stacey, G., Taylor, C.G., Huber, S.C., Clough, S.J. 2012. 14-3-3 Proteins SGF14c and SGF14l play critical roles during soybean nodulation. Plant Physiology. 160:2125-2136.
Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max - (Peer Reviewed Journal)
Zabala, G., Campos, E., Varala, K.K., Bloomfield, S., Jones, S.I., Win, H., Tuteja, J.H., Calla, B., Clough, S.J., Hudson, M., Vodkin, L.O. 2012. Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max. Biomed Central (BMC) Plant Biology. 12:177.
Relationship between asparagine metabolism and protein concentration in soybean seed - (Peer Reviewed Journal)
Panduranganl, S., Pajak, A., Molnar, S., Cober, E., Dhaubhadel, S., Hernandez-Sebastia, C., Kaiser, W.M., Nelson, R.L., Huber, S.C., Marsolais, F. 2012. Relationship between asparagine metabolism and protein concentration in soybean seed. Journal of Experimental Botany. 63(8):3173-3184.
Registration of high-yielding soybean germplasm line LG04-6000     Reprint Icon - (Peer Reviewed Journal)
Nelson, R.L., Johnson, E.O. 2012. Registration of high-yielding soybean germplasm line LG04-6000. Journal of Plant Registrations. 6:212-215.
Genome-wide identification of genes regulated by the Rcs Phosphorelay system in Erwinia amylovora     Reprint Icon - (Peer Reviewed Journal)
Wang, D., Qi, M., Calla, B., Korban, S., Clough, S.J., Sudin, G.W., Toth, I., Cock, P.J., Zhao, Y. 2011. Genome-wide identification of genes regulated by the Rcs Phosphorelay system in Erwinia amylovora. Molecular Plant-Microbe Interactions. 25(1):6-17.
Transcriptional analysis of soybean roots response to Fusarium virguliforme, the causal agent of sudden death syndrome     Reprint Icon - (Peer Reviewed Journal)
Radwan, O., Liu, Y., Clough, S.J. 2011. Transcriptional analysis of soybean roots response to Fusarium virguliforme, the causal agent of sudden death syndrome. Molecular Plant-Microbe Interactions. 24:958-972.
Registration of Soybean Germplasm Line LG00-6313     Reprint Icon - (Peer Reviewed Journal)
Nelson, R.L., Johnson, E.O. 2011. Registration of Soybean Germplasm Line LG00-6313. Journal of Plant Registrations. 5:406-409.
Registration of Soybean Germplasm Line LG00-3372     Reprint Icon - (Peer Reviewed Journal)
Nelson, R.L., Johnson, E.O. 2011. Registration of Soybean Germplasm Line LG00-3372. Journal of Plant Registrations. 5:403-405.
Managing self-pollinated germplasm collections to maximize utilization - (Peer Reviewed Journal)
Nelson, R.L. 2011. Managing self-pollinated germplasm collections to maximize utilization. Plant Genetic Resources. 9:123-133.
Genetic diversity and population structure of Korean and Chinese soybean [Glycine max (L.) Merr.] accessions - (Peer Reviewed Journal)
Lee, J., Vuong, T.D., Moon, H., Yu, J., Nelson, R.L., Nguyen, H.T., Shannon, J.G. 2011. Genetic diversity and population structure of Korean and Chinese soybean [Glycine max (L.) Merr.] accessions. Crop Science. 51:1080-1088.
Evaluating Progeny of Glycine max by Glycine tomentella for Novel Disease Resistance - (Abstract Only)
Ma, J., Slaminko, T., Singh, R., Hartman, G.L., Nelson, R.L. 2010. Evaluating Progeny of Glycine max by Glycine tomentella for Novel Disease Resistance [abstract]. American Society of Agronomy, Crop Science Society of America, Soil Science Society of America 2010 International Annual Meetings. Long Beach, CA. October 31 - November 4, 2010. CD ROM.
Genetic Diversity and Soybean Yield: Finding the Balance - (Abstract Only)
Nelson, R.L. 2010. Genetic Diversity and Soybean Yield: Finding the Balance [abstract]. ASA-CSSA-SSSA Annual Meeting Abstracts. CDROM.
Regulatory genes and environmental regulation of amylovoran biosynthesis in Erwinia amylovora - (Proceedings)
Wang, D., Korban, S.S., Sundin, G.W., Clough, S.J., Toth, I., Zhao, Y. 2011. Regulatory genes and environmental regulation of amylovoran biosynthesis in Erwinia amylovora. Acta Horticulture Proceedings. 896:195-202 http://www.actahort.org/books/896/896_25.htm.
Numbers of Genes in the NBS and RLK Families Vary by More than Four-Fold Within a Plant Species and are Regulated by Multiple Factors - (Peer Reviewed Journal)
Zhang, M., Wu, Y., Lee, M., Liu, Y., Rong, Y., Santos, T.S., Wu, C., Xie, F., Nelson, R.L., Zhang, H. 2010. Numbers of Genes in the NBS and RLK Families Vary by More than Four-Fold Within a Plant Species and are Regulated by Multiple Factors. Nucleic Acids Research. Available: doi:10.1093/nar/gkq524.
Biotic Stress Globally Down-Regulates Photosynthesis Genes - (Peer Reviewed Journal)
Bilgin, D.D., Zavala, J.A., Zhu, J., Clough, S.J., Ort, D.R., Delucia, E.H. 2010. Biotic Stress Globally Down-Regulates Photosynthesis Genes. Plant Cell and Environment. doi: 10.1111/j.1365-3040.2010.02167.x.
Registration of LG04-6863 Soybean Germplasm Line with Diverse Pedigree     Reprint Icon - (Peer Reviewed Journal)
Shannon, J.G., Nelson, R.L., Lee, J.D., Wrather, J.A. 2010. Registration of LG04-6863 Soybean Germplasm Line with Diverse Pedigree. Journal of Plant Registrations. 4:70-72.
Artificial Selection for Determinate Growth Habit in Soybean     Reprint Icon - (Peer Reviewed Journal)
Tian, Z., Wang, X., Lee, R., Li, Y., Specht, J.E., Nelson, R.L., McClean, P.E., Qiu, I., Ma, J. 2010. Artificial Selection for Determinate Growth Habit in Soybean. In: Proceedings of the National Academy of Sciences. PNAS 107(19):8563-8568. Available: www.pnas.org/cgi/doi/10.1073/pnas.1000088107.
Effects of Chronic Elevated Ozone Concentration on Antioxidant Capacity, Photosynthesis and Seed Yield of 10 Soybean Cultivars - (Peer Reviewed Journal)
Betzelberger, A.M., Gillespie, K.M., Mcgrath, J.M., Koester, R.P., Nelson, R.L., Ainsworth, E.A. 2010. Effects of Chronic Elevated Ozone Concentration on Antioxidant Capacity, Photosynthesis and Seed Yield of 10 Soybean Cultivars. Plant Cell and Environment. 33(9):1569-1581. Available: doi: 10.1111/j.1365-3040.2010.02165.x.
Complete Transcriptome of the Soybean Root Hair Cell, a Single Cell Model, and its Alteration in Response to Bradyrhizobium japonicum Infection     Reprint Icon - (Peer Reviewed Journal)
Libault, M., Farmer, A., Brechenmacher, L., Franck, W.L., Drnevich, J., Langley, R.J., Bilgin, D.D., Radwan, O., Neece, D.J., Clough, S.J., May, G., Stacey, G. 2009. Complete Transcriptome of the Soybean Root Hair Cell, a Single Cell Model, and its Alteration in Response to Bradyrhizobium japonicum Infection. Plant Physiology. 152: 541-552.
Genetic Diversity and Agronomic Improvement of North American Soybean Germplasm     Reprint Icon - (Peer Reviewed Journal)
Mikel, M.A., Diers, B.W., Nelson, R.L., Smith, H.H. 2010. Genetic Diversity and Agronomic Improvement of North American Soybean Germplasm. Crop Science. 50:1219-1229.
Soybean root defense responses to Fusarium virguliforme infection reveals a role of defense related genes during resistance     Reprint Icon - (Abstract Only)
Radwan, O., Clough, S.J. 2009. Soybean root defense responses to Fusarium virguliforme infection reveals a role of defense related genes during resistance [abstract]. American Phytopathology Society. 99:S106.
Discrete Variation Of Glycitein Ratio In Soybean (Glycine max) Hypocotyls - (Proceedings)
Berger, M., Artigot, M., Nelson, R.L., Dayde, J. 2009. Discrete Variation Of Glycitein Ratio In Soybean (Glycine max) Hypocotyls [abstract]. [abstract]. In: Proceedings of the World Soybean Research Conference VIII,August 9-16, 2009, Beijing, China. 2009 CDROM.
Responses of Soybean Cultivars to Elevated CO2 and O3 - (Abstract Only)
Nelson, R.L., Ainsworth, E.A., Long, S., Ort, D.R. 2009. Responses of Soybean Cultivars to Elevated CO2 and O3 [abstract]. In: Proceedings of the American Society of Agronomy, Crop Science Society of America, Soil Science Society of America Abstracts, Annual International Meeting, November 1-5, 2009,Pittsburgh, PA. 2009 CDROM.
The Utilization of Soybean Wild Relatives: How Can It Be Effective? - (Proceedings)
Singh, R.J., Nelson, R.L. 2009. The Utilization of Soybean Wild Relatives: How Can It Be Effective? [abstract]. In: [abstract]. In: Proceedings of the World Soybean Research Conference VIII,August 9-16, 2009, Beijing, China. 2009 CDROM.
Responses of Soybean Cultivars to Elevated CO2 and O3 - (Proceedings)
Nelson, R.L., Ainsworth, E.A., Long, S., Ort, D.R. 2009. Responses of Soybean Cultivars to Elevated CO2 and O3 [abstract]. In: Proceedings of the World Soybean Research Conference VIII, August 9-16, 2009, Beijing, China. 2009 CDROM.
Collection, Conservation, and Evaluation of Soybean Germplasm - (Proceedings)
Nelson, R.L. 2009. Collection, Conservation, and Evaluation of Soybean Germplasm [abstract]. In: Proceedings of the World Soybean Research Conference VIII,August 9-16, 2009, Beijing, China. 2009 CDROM.
Wide Hybridization in Soybean - (Proceedings)
Signh, R.J., Nelson, R.L. 2009. Wide Hybridization in Soybean [abstract]. In: [abstract]. In: Proceedings of the World Soybean Research Conference VIII,August 9-16, 2009, Beijing, China. 2009 CDROM.
Expanding Genetic Diversity to Increase Soybean Seed Yield - (Proceedings)
Nelson, R.L. 2009. Expanding Genetic Diversity to Increase Soybean Seed Yield [abstract]. In: Proceedings of the World Soybean Research Conference VIII,August 9-16, 2009, Beijing, China. 2009 CDROM.
Preliminary Analysis of High-Throughput Expression Data and Small RNA in Soybean Stem Tissue Infected with Sclerotinia sclerotiorum     Reprint Icon - (Abstract Only)
Calla, B., Varala, K.K., Win, H., Hudson, M.E., Vodkin, L.O., Clough, S.J. 2009. Preliminary Analysis of High-Throughput Expression Data and Small RNA in Soybean Stem Tissue Infected with Sclerotinia sclerotiorum [abstract]. Proceedings of the International Sclerotinia Workshop. May 31-June 4, 2009, Wilmington, NC. P. 6.
Soybean Yield and Genetics - (Proceedings)
Nelson, R.L. 2009. Soybean Yield and Genetics [abstract]. In: Proceedings of the Enhancing Soybean Productivity for the 21st Century – Strategy and Tactics, March 29-30, 2009, Tsukuba, Japan. 2009 CDROM.
Gene Expression Profiling Soybean Stem Tissue Early Response to Sclerotinia sclerotiorum and in Silico Mapping in Relation to Resistance Markers     Reprint Icon - (Peer Reviewed Journal)
Calla, B., Vuong, T., Radwan, O., Hartman, G.L., Clough, S.J. 2009. Gene Expression Profiling Soybean Stem Tissue Early Response to Sclerotinia sclerotiorum and in Silico Mapping in Relation to Resistance Markers. The Plant Genome. 2:149-166.
Effects of Photosystem II Interfering Herbicides Atrazine and Bentazon on the Soybean Transcriptome - (Peer Reviewed Journal)
Zhu, J., Patzoldt, W.L., Radwan, O., Tranel, P.J., Clough, S.J. 2009. Effects of Photosystem II Interfering Herbicides Atrazine and Bentazon on the Soybean Transcriptome. The Plant Genome. 2:191-205.
A Robust Plant RNA Isolation Method for Affymetrix Genechip® Analysis and Quantitative Real-Time RT-PCR - (Peer Reviewed Journal)
Bilgin, D.D., Delucia, E.H., Clough, S.J. 2009. A Robust Plant RNA Isolation Method for Affymetrix Genechip® Analysis and Quantitative Real-Time RT-PCR. Nature Protocols. 4:333-340.
Environmental Effects on Lutein Concent and Relationship of Lutein and Other Seed Components in Soybean - (Peer Reviewed Journal)
Lee, J.D., Shannon, J.G., So, Y.S., Sleper, D.A., Nelson, R.L., Lee, J.H., Choung, M.G. 2009. Environmental Effects on Lutein Concent and Relationship of Lutein and Other Seed Components in Soybean. Plant Breeding. 128:97-100.
Differences and Similarities of Soybean Defense-Related Genes Suppressed by Pathogenic and Symbiotic Bacteria     Reprint Icon - (Abstract Only)
Osman, R., Clough, S.J. 2009. Differences and Similarities of Soybean Defense-Related Genes Suppressed by Pathogenic and Symbiotic Bacteria [abstract]. Annual International Plant and Animal Genome Conference. January 10-14, 2009, San Diego, CA. Available: http://www.intl-pag.org/pag/17/abstracts/W52_PAGXVII_364.html
Genomic Cross Comparison of Soybean Pathogens and the Symbiont Bradyrhizobium japonicum - (Abstract Only)
Radwan, O., Calla, B., Clough, S.J. 2008. Genomic Cross Comparison of Soybean Pathogens and the Symbiont Bradyrhizobium japonicum [abstract]. 4th International Conference on Legume Genomics and Genetics, December 7-12, 2008, Puerto Vallarta, Mexico. 2008 CDROM.
Preliminary Analysis of Soybean Gene Expression Response to a Bradyrhizobium japonicum Type III Secretion System Mutant - (Abstract Only)
Radwan, O., Carbajulca, D., Libault, M., Brechenmacher, L., Clough, S.J. 2008. Preliminary Analysis of Soybean Gene Expression Response to a Bradyrhizobium japonicum Type III Secretion System Mutant [abstract]. 4th International Conference on Legume Genomics and Genetics, December 7-12, 2008, Puerto Vallarta, Mexico. 2008 CDROM.
Soybean Cultivar Variation in Response to Elevated Ozone Concentration - (Abstract Only)
Betzelberger, A., Mcgrath, J.M., Gillespie, K.M., Nelson, R.L., Ainsworth, E.A. 2008. Soybean Cultivar Variation in Response to Elevated Ozone Concentration [abstract]. In: Proceedings of the 12th Biennial Conference on Molecular and Cellular Biology of the Soybean, July 20-23, 2008, Indianpolis, IN. 2008 CDROM.
Microarray analysis of soybean treated with Fusarium virguliforme filtrate suggests a role of genes related to cell-wall modification and detoxification during resistance - (Abstract Only)
Radwan, O., Li, M., Clough, S.J. 2008. Microarray analysis of soybean treated with Fusarium virguliforme filtrate suggests a role of genes related to cell-wall modification and detoxification during resistance [abstract]. In: Proceedings of the 12th Biennial Conference on Molecular and Cellular Biology of the Soybean. July 20-23, 2008. Indianapolis, Indiana. p. 91.
Gene expression responses in photosynthetic tissues to herbicides and pathogens - (Abstract Only)
Clough, S.J., Zhu, J., Tranel, P., Patzholdt, W.L., Radwan, O., Li, M., Calla, B. 2008. Gene expression responses in photosynthetic tissues to herbicides and pathogens [abstract]. In: Proceedings of the 12th Biennial Conference on Molecular and Cellular Biology of the Soybean. July 20-23, 2008. Indianapolis, Indiana. p. 25.
Flux in the coding and small RNA transcriptomes during soybean seed and seedling development - (Abstract Only)
Vodkin, L., Jones, S., Gonzalez, D.O., Zabala, G., Hunt, M., Tuteja, J., Radwan, O., Calla, B., Clough, S.J., Varala, K., Win, H., Hudson, M. 2008. Flux in the coding and small RNA transcriptomes during soybean seed and seedling development [abstract]. In: Proceedings of the 12th Biennial Conference on Molecular and Cellular Biology of the Soybean. July 20-23, 2008. Indianapolis, Indiana. p. 27.
Genomic analysis of soybean defense response to Sclerotinia sclerotiorum - (Abstract Only)
Calla, B., Simmonds, D., Clough, S.J. 2008. Genomic analysis of soybean defense response to Sclerotinia sclerotiorum [abstract]. American Phytopathological Society Annual Meeting. 98:S30.
Cross comparison of soybean gene expression upon infection by pathogens and the symbiont Bradyrhizobium japonicum - (Abstract Only)
Radwan, O., Zernova, O., Lozovaya, V., Clough, S.J. 2008. Cross comparison of soybean gene expression upon infection by pathogens and the symbiont Bradyrhizobium japonicum [abstract]. American Phytopathological Society Annual Meeting. 98:S129.
Last Modified: 9/1/2014
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