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United States Department of Agriculture

Agricultural Research Service

Research Project: RESPONSE OF DIVERSE RICE GERMPLASM TO BIOTIC AND ABIOTIC STRESSES Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Tagging quantitative trait loci for heading date and plant-height in important breeding parents of rice (Oryza sativa) - (Peer Reviewed Journal)
Lee, S., Jia, Y., Lui, G., Jia, M.H. 2014. Tagging quantitative trait loci for heading date and plant-height in important breeding parents of rice (Oryza sativa). Euphytica. 197:191-200.
Crop performance and weed suppression by weed-suppressive rice cultivars in furrow- and flood-irrigated systems under reduced herbicide inputs - (Peer Reviewed Journal)
Gealy, D.R., Anders, M., Watkins, B., Duke, S.E. 2014. Crop performance and weed suppression by weed-suppressive rice cultivars in furrow- and flood-irrigated systems under reduced herbicide inputs. Weed Science. 62(2):303-320.
Genetic variation and evolution of the Pit blast resistance locus in rice - (Peer Reviewed Journal)
Li, J., Sun, Y., Wang, Y., Liu, H., Jia, Y., Xu, M. 2013. Genetic variation and evolution of the Pit blast resistance locus in rice. Genetic Resources and Crop Evolution. 61:473-489.
Association of arsenic concentration and speciation with straighthead disease in US produced rice - (Abstract Only)
Yan, W., Pillai, T., Loeppert, R.H., Gentry, T.J., Yeater, K.M., Huang, B., Mcclung, A.M. 2013. Association of arsenic concentration and speciation with straighthead disease in US produced rice. ASA-CSSA-SSSA Annual Meeting Abstracts. Nov. 3-6, 2013, Tampa, FL.118-3.
Current advances on genetic resistance to rice blast disease - (Book / Chapter)
Wang, X., Lee, S., Wang, J., Ma, J., Jia, Y. 2014. Current advances on genetic resistance to rice blast disease. In: Yan, W., Bao, J., editors. Rice - Germplasm, Genetics and Improvement. InTech, DOI: 10.5772/56824.
Brassica cover cropping for management of sheath blight of rice - (Abstract Only)
Zhou, X., Liu, G., Handiseni, M., Anders, M.M., Jia, Y. 2013. Brassica cover cropping for management of sheath blight of rice. Rice Field Day Abstract. Beaumont, Texas Rice Field Day 2013. Special Section: 17.
Development and characterization of rice mutants for functional genomic studies and breeding - (Book / Chapter)
Wang, Z., Jia, Y. 2014. Development and characterization of rice mutants for functional genomic studies and breeding. In: Tomlekova, N.B., Kozgar, M.I., Wani, M.R., editors. Mutagenesis: Exploring Novel Genes and Pathways. Wageningen Academic Publishers. p. 307-322.
Pgpr and Its Combined Use with Fungicide for Control of Rice Sheath Blight in the Southern U.S     Reprint Icon - (Abstract Only)
Zhou, X., Liu, G., Anders, M.M., Maxwell, H., Allen, T., Kloepper, J.W., Reddy, M.S., Jia, Y., Lu, S., Jo, Y., Way, M. 2013. PGPR and its combined use with fungicide for control of rice sheath blight in the southern U.S. Rice Field Day Abstract. Beaumont, Texas Rice XIII (Special Section, Highlighting Research):17.
Characterizing virulence phenotypes among U.S. isolates of Pyricularia oryzae using IRRI NILs, U.S. germplasm, and NERICA lines     Reprint Icon - (Abstract Only)
Rotich, F., Feng, C., Jia, Y., Correll, J. 2013. Characterizing virulence phenotypes among U.S. isolates of Pyricularia oryzae using IRRI NILs, U.S. germplasm, and NERICA lines. APS Annual Meeting. Aug. 10-14 Austin, TX Abstract #278.
Global efforts in managing rice blast disease - (Abstract Only)
Jia, Y. 2013. Global efforts in managing rice blast disease. American Phytopathological Society Abstracts. 112-S.
Analysis of rice PDR-like ABC transporter genes in sheath blight resistance - (Abstract Only)
Lee, S., Sing, P., Jia, M.H., Jia, Y. 2013. Analysis of rice PDR-like ABC transporter genes in sheath blight resistance. American Phytopathological Society Abstracts. 50-O.
Integrating choice of variety, soil amendments, and cover crops to optimize organic rice production     Reprint Icon - (Experiment Station)
Dou, F., Zhou, X., Mcclung, A.M., Landry, K., Liu, G. 2013. Integrating choice of variety, soil amendments, and cover crops to optimize organic rice production. Rice Field Day Abstract. Beaumont, Texas Rice July 2013 edition, Special section: 11-12.
Diagnostics of the red rice problem in the U.S.A - (Abstract Only)
(05-Jun-13)
Diagnostics of the red rice problem in the U.S.A - (Abstract Only)
(05-Jun-13)
Application of resistance gene analog markers to analysis of genetic structure and diversity in rice     Reprint Icon - (Peer Reviewed Journal)
Ren, J., Yu, Y., Gao, F., Zeng, L., Lu, X., Wu, X., Yan, W., Ren, G. 2013. Application of resistance gene analog markers to analysis of genetic structure and diversity in rice. Genome. 56(7):377-387.
Development of practical diagnostic methods for monitoring rice bacterial panicle blight disease and evaluation of rice germplasm for resistance - (Experiment Station)
Wamishe, Y., Jia, Y., Kelsey, C., Belmar, S., Rasheed, M. 2014. Development of practical diagnostic methods for monitoring rice bacterial panicle blight disease and evaluation of rice germplasm for resistance. In BR Wells Studies- series 609 2013. Edited by Norman, RJ., Molderhauer, KAK, University of Arkansas. Arkansas Agricultural Experiment Station Research Series. Pages 103-108.
Effect of water management variation on As and Cd accumulation or rice grain - (Abstract Only)
Chaney, R.L., Anders, M.M., Mcclung, A.M. 2013. Effect of water management variation on As and Cd accumulation or rice grain. American Chemical Society Symposium Series. Symposium on Arsenic Contamination of Food and Water. New Orleans, LA. April 10 and 11, 2013. #327.
Evaluation of brassica cover crop and PGPR strain for suppression of sheath blight of rice in Arkansas, 2012 - (Experiment Station)
Anders, M.M., Zhou, X., Jia, Y., Liu, G. 2013. Evaluation of brassica cover crop and PGPR strain for suppression of sheath blight of rice in Arkansas, 2012. Plant Disease Management Reports. 7: FC048 doi:10.1094/PDMR07.
Evolutionary insights into the origins of weediness in U.S. red rice - (Abstract Only)
Gealy, D.R., Liu, Y., Vigueira, C., Jia, Y., Caicedo, A., Burgos, N.R., Olsen, K. 2013. Evolutionary insights into the origins of weediness in U.S. red rice. Weed Science Society of America Meeting Abstracts. 53:96.
Molecular mapping of four blast resistance genes using recombinant inbred lines of 93-11 and nipponbare     Reprint Icon - (Peer Reviewed Journal)
Hongmei, Y., Jia, M.H., Jia, Y., Venus, R., Wang, Z., Sun, C., Wang, G. 2013. Molecular mapping of four blast resistance genes using recombinant inbred lines of 93-11 and nipponbare. Journal of Plant Biology. 56:91-97.
The impact of volunteer rice infestation on rice yield and grain quality - (Abstract Only)
Singh, V., Burgos, N.R., Singh, S., Salas, R.A., Gealy, D.R. 2013. The impact of volunteer rice infestation on rice yield and grain quality. Proceedings of Southern Weed Science Society. 66:51.
Potential improvement in rice seedling establishment and weed suppression in reduced-input systems using osmotically pre-conditioned seed - (Abstract Only)
Gealy, D.R., Mcclung, A.M. 2013. Potential improvement in rice seedling establishment and weed suppression in reduced-input systems using osmotically pre-conditioned seed. Proceedings of Southern Weed Science Society. 66:273.
Ontogenetic changes in vitamin C in selected rice varieties     Reprint Icon - (Peer Reviewed Journal)
Lisko, K.A., Hubstenberger, J.F., Phillips, G.C., Miller, H.B., McClung, A.M., Lorence, A. 2013. Ontogenetic changes in vitamin C in selected rice varieties. Plant Physiology and Biochemistry. 66:41-46.
Root distribution and potential interactions between allelopathic rice, sprangletop (Leptochloa spp.), and barnyardgrass (Echinochloa crus-galli) based on 13C isotope discrimination analysis     Reprint Icon - (Peer Reviewed Journal)
Gealy, D.R., Duke, S.E., Moldenhauer, K. 2013. Root distribution and potential interactions between allelopathic rice, sprangletop (Leptochloa spp.), and barnyardgrass (Echinochloa crus-galli) based on 13C isotope discrimination analysis. Journal of Chemical Ecology. 39:186-203.
Field performance and genetic makeup of RU1001161, a good quality selection from crosses between weed-suppressive indica rice and commercial U.S. southern long grains - (Abstract Only)
Gealy, D.R., Moldenhauer, K., Jia, M.H. 2012. Field performance and genetic makeup of RU1001161, a good quality selection from crosses between weed-suppressive indica rice and commercial U.S. southern long grains. 6th World Congress on Allelopathy. Dec. 15-19, 2011. Guangzhou, China. pg. 114.
Pgpr: a Novel Strategy for the Control of Rice Sheath Blight Disease - (Abstract Only)
Zhou, X., Kumar, V.K., Reddy, M.S., Kloepper, J.W., Jia, Y., Allen, T.W., Way, M.O. 2013. PGPR: A novel strategy for the control of rice sheath blight disease. Thirty-Fourth Rice Technical Working Group Meeting Proceedings, Hot Springs, AR, February 27-March 1, 2012. Page 81.
Construction of a yeast two hybrid library in a compatible interaction of rice with an AVR-Pita1 containing isolate - (Abstract Only)
Zhang, Z., Jia, Y., Wang, Y., Liu, F., Sun, G. 2013. Construction of a yeast two hybrid library in a compatible interaction of rice with an AVR-Pita1 containing isolate. Thirty-Fourth Rice Technical Working Group, Hot Springs, AR. Page 73.
Development of inter-specific chromosomes segment substitution libraries (CSSL) in rice - (Abstract Only)
Singh, N., Kim, H., Ali, M., Akther, K.M., Ahn, S., Eizenga, G.C., Mccouch, S.R. 2012. Development of inter-specific chromosomes segment substitution libraries (CSSL) in rice. International Plant and Animal Genome Conference. XXI. January 12-16, 2013 San Diego, CA.
Developing rice mapping populations as a genetic resource for validation of GWAS - (Abstract Only)
Eizenga, G.C., Ali, M., Mccouch, S.R. 2012. Developing rice mapping populations as a genetic resource for validation of GWAS. International Plant and Animal Genome Conference. XXI. San Diego, CA - January 12-16, 2013.
Identification of rice blast resistance genes using international monogenic differentials     Reprint Icon - (Peer Reviewed Journal)
Wang, J., Jia, Y., Wen, J., Liu, W., Liu, X., Li, L., Jiang, Z., Zhang, J., Guo, X., Ren, J. 2013. Identification of rice blast resistance genes using international monogenic differentials. Crop Protection. 45:109-116.
Analysis of genetic and molecular identity among field isolates of the rice blast fungus with an international differential system, rep-PCR and DNA sequencing     Reprint Icon - (Peer Reviewed Journal)
Xing, J., Jia, Y., Correll, J.C., Lee, F.N., Cartwright, R., Cao, M., Yuan, L. 2013. Analysis of genetic and molecular identity among field isolates of the rice blast fungus with an international differential system, rep-PCR and DNA sequencing. Plant Disease. 97:491-495.
Rich phenotypic and genotypic variation found in a "Rice Diversity Panel" - (Proceedings)
Ali, M.L., Hancock, T.A., Declerck, G.A., Mcclung, A.M., Mccouch, S.R., Eizenga, G.C. 2012. Rich phenotypic and genotypic variation found in a "Rice Diversity Panel". Rice Technical Working Group Meeting Proceedings. 34th Rice Technical Working Group. Hot Springs, AR Feb. 27-Mar. 1, 2012. pg. 66-67.
Establishment and application of an efficient, economic, and rapid rice DNA extraction method - (Peer Reviewed Journal)
Zhao, G., Jia, Y., Deren, C.W., Yan, Z., Jia, M.H., Dai, L. 2012. Establishment and application of an efficient, economic, and rapid rice DNA extraction method. Chinese Journal of Rice Science. 26(4):495-499.
Confirming QTLs and finding additional loci responsible for resistance to rice sheath blight disease     Reprint Icon - (Peer Reviewed Journal)
Liu, G., Jia, Y., McClung, A.M., Oard, J., Lee, F., Correll, J. 2013. Confirming QTLs and finding additional loci responsible for resistance to rice sheath blight disease. Plant Disease. 97:113-117.
Indica and Japonica crosses resulting in linkage block and recombination suppression on rice chromosome 12     Reprint Icon - (Peer Reviewed Journal)
Jia, Y., Jia, M.H., Wang, Z., Liu, G. 2012. Indica and Japonica crosses resulting in linkage block and recombination suppression on rice chromosome 12. PLoS One. 7(8):Article e43066.
Rice disease management under organic production - (Experiment Station)
Zhou, X., Mcclung, A.M. 2012. Rice disease management under organic production. Rice Field Day Abstract. Texas Rice Special Section, Highlighting Research pg. 26-27.
Transcriptome and methylome interactions in rice hybrids     Reprint Icon - (Peer Reviewed Journal)
Chodavarapu, R.K., Feng, S., Ding, B., Simon, S.A., Lopez, D., Jia, Y., Wang, G., Meyers, B.C., Jacobsen, S.E., Pellegrini, M. 2012. Transcriptome and methylome interactions in rice hybrids. Proceedings of the National Academy of Sciences. 109:30-36.
Developing sustainable management practices for organic rice production - (Experiment Station)
Dou, F., Xin-Gen, Z., McClung, A.M., Liu, G., Landry, K. 2012. Developing sustainable management practices for organic rice production. Texas Rice, Highlights in Research XV: 15-16.
Pathological and molecular characterization of rice blast pathogenicity factor AVR-Pital in field isolates     Reprint Icon - (Experiment Station)
Jia, Y., Correll, J.C., Lee, F.N. 2012. Pathological and molecular characterization of rice blast pathogenicity factor AVR-Pital in field isolates. Arkansas Agricultural Experiment Station Research Series. BR Wells Rice Research Studies 2011 pg. 53-72.
Natural variation and evolution of the avirulence genes in Magnaporthe oryzae - (Abstract Only)
Jia, Y., Zhang, Z., Xing, J., Wang, J., Correll, J.C., Cartwright, R. 2012. Natural Variation and Evolution of the Avirulence Genes in Magnaporthe Oryzae. American Phytopathological Society. published online.
Identification of the rice blast resistance gene Pi-b in the national small grains collection     Reprint Icon - (Peer Reviewed Journal)
RoyChowdhury, M., Jia, Y., Jia, M.H., Fjellstrom, R.G., Cartwright, R. 2012. Identification of the rice blast resistance gene Pi-b in the national small grains collection. Phytopathology 102(7):700-706.
Weed suppression potential of 'Rondo' and other indica rice germplasm lines - (Peer Reviewed Journal)
Gealy, D.R., Yan, W. 2012. Weed suppression potential of 'Rondo' and other indica rice germplasm lines. Weed Technology. 26:517-524.
SSR marker analysis of atypical U.S red rice phenotypes: indications of prior gene flow in rice fields? - (Peer Reviewed Journal)
Gealy, D.R., Agrama, H., Jia, M.H. 2012. SSR marker analysis of atypical U.S red rice phenotypes: Indications of prior gene flow in rice fields? Weed Science. 60:451-461.
Using a rice diversity panel for association mapping and it's validation - (Proceedings)
Eizenga, G.C., Mcclung, A.M., Ali, M.L., Tung, C., Wright, M.H., Mezey, J.G., Mccouch, S.R. 2012. Using a rice diversity panel for association mapping and it's validation. Rice Technical Working Group Meeting Proceedings. 34th Rice Technical Working Group. Hot Spring, AR Feb. 27-Mar. 1, 2012. pg. 51-52.
Dissecting the genetic diversity in African rice - (Proceedings)
Sreerekha, M.V., Sanchez, P.L., Eizenga, G.C. 2012. Dissecting the genetic diversity in African rice. Rice Technical Working Group Meeting Proceedings. 34th Rice Technical Working Group. Hot Springs, AR Feb. 27 - Mar. 1, 2012. pg. 50-51.
Differentiation of weedy traits in ALS-resistant red rice - (Abstract Only)
Singh, V., Burgos, N.R., Tseng, T.M., Black, H.L., Estorninos, L., Salas, R.A., Alcober, E.A., Botha, G.M., Batoy, M.B., Gealy, D.R. 2012. Differentiation of weedy traits in ALS-resistant red rice. Proceedings of Southern Weed Science Society. 65:233.
Outcrossing potential between U.S. red rice (Oryza sativa) and Chinese indica rice (Oryza sativa) lines - (Abstract Only)
Gealy, D.R., Burgos, N.R. 2012. Outcrossing potential between U.S. red rice (Oryza sativa) and Chinese indica rice (Oryza sativa) lines. Weed Science Society of America Meeting Abstracts. Volume 52: Abstract #286.
Analysis of rice blast resistance in rice breeding parents from USA using molecular markers and pathogenicity assays - (Peer Reviewed Journal)
Zhao, G., Yan, Z., Jia, Y., Deren, C.W., Dai, L. 2012. Analysis of rice blast resistance in rice breeding parents from USA using molecular markers and pathogenicity assays. Molecular Plant Breeding of China. 10:207-213.
Unraveling the rich phenotypic and genetic diversity in rice for varietal improvement - (Abstract Only)
Eizenga, G.C., Mcclung, A.M., Mccouch, S.R., Ali, M.L., Imai, I., Kim, H., Prasad, B., Ahn, S. 2012. Unraveling the rich phenotypic and genetic diversity in rice for varietal improvement. Proceedings 8th SABRAO Congress. Jan. 13-16, 2012 Chiang Mai, Thailand p. 23-24.
A digital photography and analysis system for estimation of root and shoot development in rice weed suppression studies in the field - (Abstract Only)
Gealy, D.R., Pinson, S.R. 2013. A digital photography and analysis system for estimation of root and shoot development in rice weed suppression studies in the field. 35th Rice Technical Working Group Meeting Proceedings. February 27, - March 1, 2012, Hot Springs, Arkansas. CDROM
Structure, Function, Interaction, Co-evolution of Rice Blast Resistance Genes - (Peer Reviewed Journal)
Roychowdhury, M., Jia, Y., Cartwright, R.D. 2012. Structure, function, interaction, co-evolution of rice blast resistance genes. Acta Agronomica Sinica. 38: 381-393.
Understanding of evolutionary genomics of invasive species of rice - (Abstract Only)
Jia, Y., Gealy, D., Burgos, N., Olsen, K., and Caceido, A. 2012. Understanding of Evolutionary Genomics of Invasive Species of Rice. Page 46.
Characterization of genetic diversity of rice blast fungus in Arkansas field isolates - (Abstract Only)
Jia, Y., Xing, J., Crrell, J. Lee, FN. Cartwright, R., Cao, M., Yuan, L. 2012. Characterization of genetic diversity of rice blast fungus in Arkansas field isolates. Page 77.
Understanding rice heterosis using deep sequencing - (Abstract Only)
Venu, R., Jia, Y., Liu, G., Jia, M.H., Nobuta, K., Sreerekha, M., Moldenhauer, K.A., Pellgrini, M., Jacobsen, S.E., Mcclung, A.M. 2012. Understanding rice heterosis using deep sequencing. Rice Technical Working Group Meeting Proceedings. Feb. 27 - Mar. 1, 2012. Hot Springs, AR. pg. 46-47..
Identification of expressed genes in the mapped QTLs for yield related traits in rice - (Abstract Only)
Venu, R., Jia, Y., Liu, G., Jia, M.H., Nobuta, K., Sreerekha, M., Moldenhauer, K.A., Pellgrini, M., Jacobsen, S.E., Mcclung, A.M. 2012. Identification of expressed genes in the mapped QTLs for yield related traits in rice. Rice Technical Working Group Meeting Proceedings. Feb. 27 - Mar. 1, 2012. Hot Springs, AR. pg. 61.
Utilizing the genetic diversity within rice cultivars - (Peer Reviewed Journal)
Miller, H.B., Miller, G.H., Moldenhauer, K.A. 2011. Utilizing the genetic diversity within rice cultivars. Planta. 235:641-647.
High-throughput SNP genotyping for breeding applications in rice using the BeadXpress platform - (Peer Reviewed Journal)
(22-Oct-11)
Genomic structure of weedy rice - (Abstract Only)
Hyma, K., Olsen, K., Jia, Y., Caicedo, A. 2012. Genomic structure of weedy rice. Annual International Plant & Animal Genome Conference. Abstract for conference.
Molecular evolution of the rice blast resistance gene Pi-ta in invasive weedy rice in the USA - (Peer Reviewed Journal)
Lee, S., Jia, Y., Jia, M.H., Gealy, D.R., Olsen, K.M., Caicedo, A.L. 2011. Molecular evolution of the rice blast resistance gene Pi-ta in invasive weedy rice in the USA. PLoS One. 6(10):1-11.
Use of 13C isotope discrimination analysis to quantify distribution of barnyardgrass and rice roots in a four-year study of weed-suppressive rice - (Peer Reviewed Journal)
Gealy, D.R., Moldenhauer, K. 2012. Use of 13C isotope discrimination analysis to quantify distribution of barnyardgrass and rice roots in a four-year study of weed-suppressive rice. Weed Science. 60:133–142.
Comparative analysis of putative pathogenesis-related gene expression in two Rhizoctonia solani pathosystems - (Peer Reviewed Journal)
Rioux, R., Manmathan, H., Singh, P., De Los Reyes, B., Jia, Y., Tavantzis, S. 2011. Comparative analysis of putative pathogenesis-related gene expression in two Rhizoctonia solani pathosystems. Current Genetics. 57:391-408.
Registration of four rice germplasm lines with improved resistance to sheath blight and blast diseases     Reprint Icon - (Peer Reviewed Journal)
Jia, Y., Liu, G., Correa-Victoria, F.J., McClung, A.M., Oard, J.H., Bryant, R.J., Jia, M.H., Corell, J.C. 2011. Registration of four rice germplasm lines with improved resistance to sheath blight and blast diseases. Journal of Plant Registrations. 6(1):95-100.
Molecular evolution of flowering time loci in U.S. weedy rice - (Abstract Only)
Thurber, C., Olsen, K., Jia, Y., Caicedo, A. 2011. Molecular evolution of flowering time loci in U.S. weedy rice [abstract]. In: Botany 2011, July 9 – 13, 2011, St. Louis, Missouri. p. 274.
Gene flow and herbicide resistance: Lessons learned from herbicide-resistant rice systems - (Abstract Only)
Gealy, D.R., Burgos, N.R. 2011. Gene flow and herbicide resistance: Lessons learned from herbicide-resistant rice systems. American Phytopathological Society Annual Meeting. August 6-10, 2011. Honolulu, Hawaii. Pesticide Resistance in Agriculture-A Global Issue.
Inoculation and Scoring Methods for Rice Sheath Blight Disease Caused by Rhizoctonia solani - (Book / Chapter)
Jia, Y., Liu, G., Park, D., Yang, Y. 2013. Inoculation and scoring methods for rice sheath blight disease caused by Rhizoctonia solani. In: Yang, Y., editor. Rice Protocols. Methods in Molecular Biology Book Series, Volume 956. Humana Press. p. 257-268.
Genome-wide association mapping reveals rich genetic architecture of complex traits in Oryza sativa - (Peer Reviewed Journal)
Zhao, K., Tung, C., Eizenga, G.C., Wright, M.H., Ali, M., Price, A., Norton, G., Islam, R.M., Reynolds, A., Mezey, J., McClung, A.M., Bustamante, C.D., Mccouch, S.R. 2011. Genome-wide association mapping reveals rich genetic architecture of complex traits in Oryza sativa. Nature Communications. Available: DOI: 10.1038/ncomms1467.
Rice chromosome segment substitution line selection utilizing SNP markers - (Abstract Only)
Eizenga, G.C., Ali, M., Kim, H., Wright, M., Ahn, S., McCouch, S.R. 2011. Rice chromosome segment substitution line selection utilizing SNP markers. ASA-CSSA-SSSA Annual Meeting Abstracts. Paper 65738.
Analysis of rice blast resistance gene Pi-z in rice germplasm using pathogenicity assays and DNA markers - (Peer Reviewed Journal)
RoyChowdhury, M., Jia, Y., Jackson, A.K., Jia, M.H., Fjellstrom, R.G., Cartwright, R. 2012. Analysis of rice blast resistance gene Pi-z in rice germplasm using pathogenicity assays and DNA markers. Euphytica. 184:35-46.
Sheath-blight resistance QTLs and in japonica rice germplasm - (Peer Reviewed Journal)
Nelson, J., Oard, J.H., Groth, D., Utomo, H., Jia, Y., Liu, G., Moldenhauer, K.K., Correa-Victoria, F.J., Fjellstrom, R.G., Scheffler, B.E., Prado, G.A. 2011. Sheath-blight resistance QTLs and in japonica rice germplasm. Euphytica. 184:23-24.
The short and the long of it: SD1 polymorphism and the evolution of growth trait divergence in U.S. weedy rice - (Peer Reviewed Journal)
Reagon, M., Thurber, C.S., Olsen, K.M., Jia, Y., Caicedo, A.L. 2011. The short and the long of it: SD1 polymorphism and the evolution of growth trait divergence in U.S. weedy rice. Molecular Ecology. 20:3743-3756.
Disease severity of organic rice as affected by host resistance, fertility and tillage - (Other)
Zhou, X., McClung, A.M. 2011. Disease severity of organic rice as affected by host resistance, fertility and tillage. Texas Rice. XI(4):3-7.
Release of four new breeding lines having resistance to blast and sheath blight diseases - (Experiment Station)
Jia, Y., Bryant, R.J., Jia, M.H., McClung, A.M., Liu, G., Oard, J., Correa, F. 2011. Release of four new breeding lines having resistance to blast and sheath blight diseases. Texas Rice Special Section, Highlighting Research in 2011. p. VIII-IX.
Biocontrol of sheath blight and narrow brown leaf spot in organic rice - (Experiment Station)
Zhou, X., McClung, A.M. 2011. Biocontrol of sheath blight and narrow brown leaf spot in organic rice. Texas Rice Special Section, Highlighting Research in 2011. p. XXIII-XXIV.
Comparison of disease severity and yield potential of rice varieties in two organic cropping systems - (Experiment Station)
Zhou, X., McClung, A.M. 2011. Comparison of disease severity and yield potential of rice varieties in two organic cropping systems. Texas Rice Special Section, Highlighting Research in 2011. p. XXIV-XXV.
Field evaluation of rice varieties for resistance to major diseases - (Experiment Station)
Zhou, X., Tabien, R.E., McClung, A.M. 2011. Field evaluation of rice varieties for resistance to major diseases. Texas Rice Special Section, Highlighting Research in 2011. p. XXVIII-XXIX.
Biocontrol-based sheath blight management to reduce fungicide use on rice - (Experiment Station)
Zhou, X., Kumar, K.A., Reddy, M.S., Liu, G., Kloepper, J.W., Jia, Y., Allen, T.W., Lu, S. 2011. Biocontrol-based sheath blight management to reduce fungicide use on rice. Texas Rice Special Section, Highlighting Research in 2011. p. XXIV-XXV.
Molecular mapping of yield related traits in a recombinant inbred line population of a Nipponbare x 93-11 cross and identification of candidate genes associated with heterosis in rice - (Abstract Only)
Venu, R., Jia, Y., Liu, G., Jia, M.H., Nobuta, K., Sreerekha, M., Moldenhauer, K., Pellegrini, M., Jacobsen, S., McClung, A.M., Meyers, B., Wang, G. 2011. Molecular mapping of yield related traits in a recombinant inbred line population of a Nipponbare x 93-11 cross and identification of candidate genes associated with heterosis in rice [abstract]. American Society of Plant Biologists Annual Meeting, Minneapoli, Minnesota. Abstract P15068.
13Carbon isotope discrimination in roots and shoots of major weed species of southern U.S. rice fields and its potential use for analysis of rice-weed root interactions - (Peer Reviewed Journal)
Gealy, D.R., Gealy, G.S. 2011. 13Carbon isotope discrimination in roots and shoots of major weed species of southern U.S. rice fields and its potential use for analysis of rice-weed root interactions. Weed Science. 59(4):587-600.
Reducing the severity of false smut in rice fields - (Other)
Anders, M.M., Brooks, S.A. 2011. Reducing the severity of false smut in rice fields. Texas Rice. XI(3):11-15.
Influences from long-term crop rotation, soil tillage and fertility on the severity of rice grain smuts     Reprint Icon - (Peer Reviewed Journal)
Brooks, S.A., Anders, M.M., Yeater, K.M. 2011. Influences from long-term crop rotation, soil tillage and fertility on the severity of rice grain smuts. Plant Disease. 95(8):990-996.
Severe outbreak of bacterial panicle blight across Texas Rice Belt in 2010 - (Abstract Only)
Zhou, X.G., Mcclung, A.M., Way, M.O., Jo, Y., Tabien, R.E., Wilson, L.T. 2011. Severe outbreak of bacterial panicle blight across Texas Rice Belt in 2010 [abstract]. Phytopathology. 101:S205.
Field disease reaction of rice cultivars and elite lines in Texas - (Abstract Only)
Zhou, X.G., Tabien, R.E., Mcclung, A.M. 2011. Field disease reaction of rice cultivars and elite lines in Texas [abstract]. Phytopathology. 101:S204.
A rice diversity panel evaluated for genetic and agro-morphological diversity between subpopulations and its geographic distribution - (Peer Reviewed Journal)
Liakat Ali, M., McClung, A.M., Jia, M.H., Kimball, J.A., McCouch, S.R., Eizenga, G.C. 2011. A rice diversity panel evaluated for genetic and agro-morphological diversity between subpopulations and its geographic distribution. Crop Science. 51(5):2021-2035.
Utilizing wild species to improve cultivated rice for yield, pest resistance, and response to climate change - (Abstract Only)
McClung, A.M., Eizenga, G.C., Gealy, D.R., Ziska, L.H., McCouch, S.R. 2011. Utilizing wild species to improve cultivated rice for yield, pest resistance, and response to climate change [abstract]. 96th Ecological Society of America Abstracts, August 7-12, 2011, Austin, Texas. Available: http://eco.confex.com/eco/2011/preliminaryprogram/abstract_27675.htm.
High-resolution mapping of Rsn1, a locus controlling sensitivity of rice to a necrosis-inducing phytotoxin from Rhizoctonia solani AG1-IA     Reprint Icon - (Peer Reviewed Journal)
Costanzo, S., Jackson, A.K., Brooks, S.A. 2011. High-resolution mapping of Rsn1, a locus controlling sensitivity of rice to a necrosis-inducing phytotoxin from Rhizoctonia solani AG1-IA. Theoretical and Applied Genetics. 123(1):33-41.
13Carbon isotope discrimination in major C4 weeds of rice-implications for root interference studies - (Abstract Only)
Gealy, D.R. 2011. 13Carbon isotope discrimination in major C4 weeds of rice-implications for root interference studies [abstract]. Proceedings of Southern Weed Science Society. 64:138.
Responses of rice cultivars and elite lines to diseases in tilled organic production system, 2010 - (Other)
Zhou, X., McClung, A.M., Cammack, J.L. 2011. Responses of rice cultivars and elite lines to diseases in tilled organic production system, 2010. Plant Disease Management Reports. 5:FC011.
Responses of rice cultivars and elite lines to diseases in no-till organic production system, 2010 - (Other)
Zhou, X., McClung, A.M., Cammack, J.L. 2011. Responses of rice cultivars and elite lines to diseases in no-till organic production system, 2010. Plant Disease Management Reports. 5:FC093.
Responses of rice cultivars and elite lines to diseases in conventional production system, 2010 - (Other)
Zhou, X., McClung, A.M., Cammack, J.L. 2011. Responses of rice cultivars and elite lines to diseases in conventional production system, 2010. Plant Disease Management Reports. 5:FC095.
Management of sheath blight and narrow brown leaf spot with biocontrol agents in organic rice, 2010 - (Other)
Zhou, X., McClung, A.M., Cammack, J.L. 2011. Management of sheath blight and narrow brown leaf spot with biocontrol agents in organic rice, 2010. Plant Disease Management Reports. 5:V120.
Evaluation of effects of fertilizers on narrow brown leaf spot in organic rice, 2010 - (Other)
Zhou, X., McClung, A.M., Cammack, J.L. 2011. Evaluation of effects of fertilizers on narrow brown leaf spot in organic rice, 2010. Plant Disease Management Reports. 5:FC051.
Chromosome Segment Substitution Lines: A Powerful Tool for the Introgression of Valuable Genes from Oryza Wild Species into Cultivated Rice (O. sativa) - (Peer Reviewed Journal)
Ali, M., Sanchez, P.L., Yu, S., Lorieux, M., Eizenga, G.C. 2010. Chromosome segment substitution lines: A powerful tool for the introgression of valuable genes from wild species of rice (Oryza spp.). Rice. 3:218–234.
Genetic and genomic dissection of resistance genes to the rice sheath blight pathogen - (Abstract Only)
Jia, Y. 2010. Genetic and genomic dissection of resistance genes to the rice sheath blight pathogen. Plant and Animal Genome Conference. http://www.intl-pag.org/19/abstracts/P05b_PAGXIX_257.html.
Isolation and characterization of a phytotoxin from Rhizoctonia solani, the causal agent of rice sheath blight - (Peer Reviewed Journal)
Yang, Y., Yang, M., Li, M., Jia, Y., Zhou, E. 2011. Isolation and characterization of a phytotoxin from Rhizoctonia solani, the causal agent of rice sheath blight. Asian Journal of Chemistry 23(8):3500-3508.
Exploring African Rice Genetic Diversity for Genetic Stock Development - (Abstract Only)
Eizenga, G.C., Sanchez, P.L. 2010. Exploring African Rice Genetic Diversity for Genetic Stock Development. Plant and Animal Genome Conference. http://www.intl-pag.org/19/abstracts/P05b_PAGXIX_257.html.
“Rice Diversity Panel”: A Genetic Resource for Exploring Phenotype-Genotype Associations in O. sativa. - (Abstract Only)
Ali, M., Goodall, D., Jia, M.H., Tung, C., Wright, M.H., Zaho, K., Bustamante, C.D., Mcclung, A.M., Mccouch, S.R., Eizenga, G.C. 2010. “Rice Diversity Panel”: A Genetic Resource for Exploring Phenotype-Genotype Associations in O. sativa.. Plant and Animal Genome Conference. http://www.intl-pag.org/19/abstracts/P05b_PAGXIX_255.html.
Capturing Positive Transgressive Variation From Wild And Exotic Germplasm Resources - (Abstract Only)
Mccouch, S.R., Tung, C., Zhao, K., Wright, M.H., Kim, H., Ali, M., Mcclung, A.M., Bustamante, C.D., Eizenga, G.C. 2010. Capturing Positive Transgressive Variation From Wild And Exotic Germplasm Resources. Plant and Animal Genome Conference. http://www.intl-pag.org/19/abstracts/W42_PAGXIX_293.html.
SNP-assisted development of interspecific CSSLs in rice - (Abstract Only)
Kim, H., Eizenga, G.C., Ahn, S., Zhao, K., Ali, M., Akthur, K., Wright, M.H., Reynolds, A., Mccouch, S.R. 2010. SNP-assisted development of interspecific CSSLs in rice. Plant and Animal Genome Conference. http://www.intl-pag.org/19/abstracts/P05b_PAGXIX_266.html.
Characterization of the Pi-b Rice Blast Resistance Gene in the National Small Grains - (Abstract Only)
Roychowdhury, M., Jia, Y., Jia, M.H., Fjellstrom, R.G., Cartwright, R.D. 2011. Characterization of the Pi-b Rice Blast Resistance Gene in the National Small Grains. American Phytopathology Society. 101:S156.
Linkage Block and Recombination Suppression at the Pi-ta locus at the Centromere Region of Rice Chromosome 12 - (Abstract Only)
Jia, Y., Jia, M.H., Liu, G. 2011. Linkage Block and Recombination Suppression at the Pi-ta locus at the Centromere Region of Rice Chromosome 12. American Phytopathology Society. 101:S82.
Development of genome-wide SNP assays for rice - (Peer Reviewed Journal)
McCouch, S.R., Zhao, K., Wright, M., Tung, C.-W., Ebana, K., Thomson, M., Reynolds, A., Wang, D., Declerck, G., Ali, M.L., McClung, A.M., Eizenga, G.C., Bustamante, C. 2010. Development of genome-wide SNP assays for rice. Breeding Science. 60(5):524–535.
Mapping Quantitative Trait Loci for Resistance to Rice Blast - (Peer Reviewed Journal)
Jia, Y., Liu, G. 2011. Mapping quantitative trait loci for resistance to rice blast. Phytopathology. 101(2):176-181.
Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.) - (Peer Reviewed Journal)
Tung, C., Zhao, K., Wright, M.K., Ali, M., Jung, J., Kimball, J.A., Tyagi, W., Thomson, M.J., McNally, K., Leung, H., Kim, H., Ahn, S., Reynolds, A., Scheffler, B.E., Eizenga, G.C., McClung, A.M., Bustamante, C.D., McCouch, S.D. 2010. Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.). Rice. 3:205–217.
Mapping Blast and Sheath Blight QTL in an Advanced Backcross Bengal/O. nivara (Wild2) Population - (Abstract Only)
Eizenga, G.C., Prasad, B., Jackson, A.K., Jia, M.H. 2010. Mapping Blast and Sheath Blight QTL in an Advanced Backcross Bengal/O. nivara (Wild2) Population. American Society of Agronomy Abstracts.
Development of genetic and molecular toolboxes to control both rice blast and sheath blight - (Proceedings)
(15-Aug-10)
Diversification and evolution of the avirulence gene AVR-Pita1 in field isolates of Magnaporthe oryzae - (Peer Reviewed Journal)
Dai, Y., Jia, Y., Correll, J.C., Wang, X., Wang, Y. 2010. Diversification and evolution of the avirulence gene AVR-Pita1 in field isolates of Magnaporthe oryzae. Fungal Genetics and Biology. 47:973-980.
Identification of rice blast resistant gene Pi-z(t) in NSGC using DNA markers and pathogenicity assays - (Abstract Only)
Roy-Chowdhury, M., Jia, Y., Jia, M.H., Jackson, A.K., Fjellstrom, R.G., Cartwright, R.D. 2010. Identification of rice blast resistant gene Pi-z(t) in NSGC using DNA markers and pathogenicity assays [abstract]. 5th International Rice Blast Conference, August 12-14, 2010, Little Rock, Arkansas. Poster Abstract IV-CP-51.
Characterization of rice lesion mimic mutants of 93-11 for a better understanding of general host defense response to both rice blast and sheath blight diseases - (Abstract Only)
Wang, X., Wu, D., Jia, Y., Zhang, M. 2011. Characterization of rice lesion mimic mutants of 93-11 for a better understanding of general host defense response to both rice blast and sheath blight diseases [abstract]. In: Fifth International Rice Blast Conference, August 12-14, 2010, Little Rock, Arkansas. p. 23.
Understanding the molecular mechanism of instability of the avirulence gene AVR-Pita1 in field isolates of Maganporthe oryzae - (Abstract Only)
Dai, Y., Correll, J.C., Jia, Y. 2010. Understanding the molecular mechanism of instability of the avirulence gene AVR-Pita1 in field isolates of Maganporthe oryzae [abstract]. 5th International Rice Blast Conference, August 12-14, 2010, Little Rock, Arkansas. Poster Abstract I-CP-12.
Rice blast disease in Texas     Reprint Icon - (Proceedings)
Zhou, X.G., Mcclung, A.M., Jia, Y. 2010. Rice blast disease in Texas. Symposium Proceedings. IV-P-65.
Expression profiling of common and specific defense responses of rice to Magnaporthe oryzae infection using deep sequencing technologies - (Proceedings)
Reddyvari-, C.V., Madhav, S., Nobuta, K., Sreerekha, M.V., Chen, S., Songkumarn, P., Jia, Y., Meyers, B.C., Wang, G. 2010. Expression profiling of common and specific defense responses of rice to Magnaporthe oryzae infection using deep sequencing technologies [abstract]. 5th International Rice Blast Conference, August 12-14, 2010, Little Rock, Arkansas. Poster Abstract II-CP-30.
Development of strategies to manage rice blast disease in the USA     Reprint Icon - (Proceedings)
Jia, Y., Lin, M.J., Dai, Y., Costanzo, S., Lee, S., Rubinelli, F.G., Green, E.A., Jia, M.H., Mcclung, A.M., Fjellstrom, R.G., Correll, J.C., Roy-Chowdhury, M., Cartwright, R., Lee, F.N., Moldenhauer, K.K., Liu, G., Zhou, X.G., Wang, X., Wu, D., Rioux, R.A., Tavantzis, S., Xing, J., Yan, L., Singh, P. 2010. Development of strategies to manage rice blast disease in the USA. Symposium Proceedings. IV-P-62.
New insight for two major rice blast R genes: Pi-ta and Pi-km - (Abstract Only)
Costanzo, S., Yang, Y., Jia, Y. 2010. New insight for two major rice blast R genes: Pi-ta and Pi-km [abstract]. 5th International Rice Blast Conference, August 12-14, 2010, Little Rock, Arkansas. Abstract II-CO-84.
Evolutionary dynamics and structure of the rice blast resistance locus Pi-ta in wild, cultivated, and US weedy rice - (Abstract Only)
Lee, S., Jia, Y., Costanzo, S., Olsen, K.M., Caicedo, A., Gealy, D.R., Jia, M.H. 2010. Evolutionary dynamics and structure of the rice blast resistance locus Pi-ta in wild, cultivated, and US weedy rice [abstract]. 5th International Rice Blast Conference, August 12-14, 2010, Little Rock, Arkansas. Abstract II-CO-85.
Plants and pathogens engage in trench warfare-knowledge learned from natural variation of rice blast resistance gene Pi-ta and the corresponding avirulence gene AVR-Pita1 - (Abstract Only)
Jia, Y. 2011. Plants and pathogens engage in trench warfare-knowledge learned from natural variation of rice blast resistance gene Pi-ta and the corresponding avirulence gene AVR-Pita1 [abstract]. In: Fifth International Rice Blast Conference, August 12-14, 2010, Little Rock, Arkansas. p. 9.
Expression profiling of common and specific defense responses of rice to Magnaporthe oryzae infection using deep sequencing technologies - (Abstract Only)
Reddyvari-Channaraya, V., Madhav, M., Nobuta, K., Sreerekha, M.V., Chen, S., Songkumarn, P., Jia, Y., Meyers, B.C., Wang, G. 2011. Expression profiling of common and specific defense responses of rice to Magnaporthe oryzae infection using deep sequencing technologies [abstract]. In: Fifth International Rice Blast Conference, August 12-14, 2010, Little Rock, Arkansas p. 75.
Mapping quantitative trait loci of rice to blast using physiological races of the fungus - (Abstract Only)
Liu, G., Jia, Y. 2010. Mapping quantitative trait loci of rice to blast using physiological races of the fungus [abstract]. 5th International Rice Blast Conference, August 12-14, 2010, Little Rock, Arkansas. Poster Abstract IV-P-56.
Identification and QTL mapping of blast resistance in wild Oryza species - (Proceedings)
Eizenga, G.C., Prasad, B., Jackson, A.K., Jia, M.H. 2010. Identification and QTL mapping of blast resistance in wild Oryza species. p. 95 In: Proc. 5th Int. Rice Blast Conf. 12-14 Aug. 2010. Little Rock, Arkansas USA.
Screening and association mapping of rice blast disease resistance using a diverse collection of rice germplasm - (Proceedings)
Ali, M.L., Zhao, K., Tung, C., Wright, M., Reynolds, A., Bustamante, C.D., Mcclung, A.M., Mccouch, S.R., Eizenga, G.C. 2010. Screening and association mapping of rice blast disease resistance using a diverse collection of rice germplasm. p. 96. In: Proc. 5th Int. Rice Blast Conf. 12-14 Aug. 2010. Little Rock, Arkansas USA.
Genomic patterns of nucleotide diversity in divergent populations of U.S. weedy rice - (Peer Reviewed Journal)
Reagon, M., Thurber, C.S., Gross, B.L., Olsen, K.M., Jia, Y., Caicedo, A.L. 2010. Genomic patterns of nucleotide diversity in divergent populations of U.S. weedy rice. BMC Evolutionary Biology. 10(180):1-16.
Gene discovery of crop disease in the postgenome era - (Book / Chapter)
Jia, Y. 2011. Gene discovery of crop disease in the postgenome era. In: Gu, W., Wang, Y., editors. Gene Discovery for Disease Models, 1st edition. John Wiley & Sons, Inc. p. 425-441.
Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome - (Peer Reviewed Journal)
Zhao, K., Wright, M.K., Kimball, J.A., Eizenga, G.C., McClung, A.M., Kovach, M.J., Tyagi, W., Ali, M., Tung, C., Reynolds, A., Bustamante, C.D., McCouch, S.R. 2010. Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome. PLoS One. 5(5):e10780. doi:10.1371/journal.pone.0010780.
13C discrimination: A stable isotope method to quantify root interactions between C3 rice (Oryza sativa) and C4 barnyardgrass (Echinochloa crus-galli) in flooded fields - (Peer Reviewed Journal)
Gealy, D.R., Fischer, A.J. 2010. 13C discrimination: A stable isotope method to quantify root interactions between C3 rice (Oryza sativa) and C4 barnyardgrass (Echinochloa crus-galli) in flooded fields. Weed Science. 58(3):359-368.
Genetic diversity of weedy red rice (Oryza sativa L.) in Arkansas, USA - (Peer Reviewed Journal)
Shivrain, V.K., Burgos, N.R., Agrama, H.A., Lawton-Rauh, A., Lu, B., Sales, M.A., Boyett, V.A., Gealy, D.R., Moldenhauer, K.K. 2010. Genetic diversity of weedy red rice (Oryza sativa L.) in Arkansas, USA. Weed Research. 50:289-302.
Genetic diversity for cold tolerance at germination in the US rice collection - (Proceedings)
Mcclung, A.M., Gibbons, J., Duke, S.E., Yan, Z., Nelms, A.M., Yan, W. 2010. Genetic diversity for cold tolerance at germination in the US rice collection. Rice Technical Working Group Meeting Proceedings. CDROM P.47.
Sequence variation at the rice blast resistance gene Pi-km locus: Implications for the development of allele specific markers     Reprint Icon - (Peer Reviewed Journal)
Costanzo, S., Jia, Y. 2010. Sequence variation at the rice blast resistance gene Pi-km locus: Implications for the development of allele specific markers. Plant Science. 178-523-530.
Molecular evolution of the sh4 shattering locus in U.S. weedy rice - (Peer Reviewed Journal)
Thurber, C.S., Reagon, M., Gross, B.L., Olsen, K.M., Jia, Y., Caicedo, A.L. 2010. Molecular evolution of the sh4 shattering locus in U.S. weedy rice. Molecular Ecology. 19:3271-3284.
Effect of early planting on weed suppression activity of indica and commercial U.S. rice cultivars - (Proceedings)
Gealy, D.R., Gibbons, J.W., Yan, W., Moldenhauer, K.K. 2010. Effect of early planting on weed suppression activity of indica and commercial U.S. rice cultivars [abstract}. Weed Science Society of America Meeting Proceedings, February 7-11, 2010, Denver, Colorado. Abstract O-265. 2010 CDROM.
Performance of weed-suppressive rice cultivars in upland and flooded production systems in Arkansas - (Proceedings)
Gealy, D.R., Anders, M.M. 2010. Performance of weed-suppressive rice cultivars in upland and flooded production systems in Arkansas [abstract]. Proceedings of Southern Weed Science Society. 63:112.
Linkage Drag: Implication for Plant Breeding - (Proceedings)
Jia, Y., Costanzo, S., Lee, S., Lin, M.J., Jia, M.H. 2010. Linkage Drag: Implication for Plant Breeding. In: Proceedings of the 33rd Rice Technical Working Group Meeting. CDROM.
An update of genetic studies of disease resistance genes and their utilizations for rice protection - (Proceedings)
Jia, Y., Costanzo, S., Lee, S., Dai, Y., Correll, J., Roy-Chodhury, M., Cartwright, R., Lee, F. 2010. An update of genetic studies of disease resistance genes and their utilizations for rice protection. In: Proceedings of the Rice Technical Working Group Meeting, Feb. 22-24, 2010, Biloxi, MS. CDROM
Compare and contrast invasive growths and global gene expressions of rice after infections with rice blast and sheath blight pathogens - (Proceedings)
Jia, Y., Wang, G.L. 2010. Compare and contrast invasive growths and global gene expressions of rice after infections with rice blast and sheath blight pathogens [abstract]. Rice Technical Working Group Meeting Proceedings, February 18-20, 2008, San Diego, California. CDROM.
Confirming QTLs and finding additional Loci responsible for resistance to Sheath Blight in Rice - (Proceedings)
Lui, G., Jia, Y., Mcclung, A.M., Oard, Correll, J.C. 2010. Confirming QTLs and finding additional Loci responsible for resistance to Sheath Blight in Rice. In: Proceedings of the 33rd Rice Technical Working Group Meeting, Feb. 22-24, 2010, Biloxi, MS. CDROM
Characterization of the Recombinant Inbred Line Population Derived from the Cross of Nipponbare/9311 - (Proceedings)
Liu, G., Jia, Y., Jia, M.H., Venu, R., Wang, G., Meyers, B., McClung, A.M. 2010. Characterization of the Recombinant Inbred Line Population Derived from the Cross of Nipponbare/9311. In: Proceedings of the 33rd Rice Technical Working Group Meeting, Feb. 22-24, 2010, Biloxi, MS. CDROM
Characterization of interacting genes with the rice blast fungus avirulence gene AVR-Pita - (Abstract Only)
Xing, J., Lee, S., Jia, Y., Yuan, L. 2010. Characterization of interacting genes with the rice blast fungus avirulence gene AVR-Pita. American Phytopathological Society Annual Meeting, Feb. 7-8, 2010, Orlando, FL. CDROM
New Marker Development for the Rice Blast Resistance Gene Pi-km - (Proceedings)
Costanzo, S., Jia, Y. 2010. New Marker Development for the Rice Blast Resistance Gene Pi-km. In: Proceedigs 33rd Rice Technical Working Group Meetings, February 22-24, 2010, Biloxi, MS. CDROM.
A “Rice Diversity Panel” evaluated for genetic and agro-morphological variation between subpopulations - (Proceedings)
Ali, M., Hancock, T.A., Jia, M.H., McCouch, S.R., Zhao, K., Tung, C., Wright, M., Reynolds, A., Bustamante, C.D., McClung, A.M., Eizenga, G.C. 2010. A “Rice Diversity Panel” evaluated for genetic and agro-morphological variation between subpopulations. In: Proceedings 33rdRice Technical Working Group Meetings, February 22-25, 2010, Biloxi, MS. CDROM
RiceCAP: Sheath blight QTLs identified in two Bengal/O. nivara advanced backcross populations - (Proceedings)
Eizenga, G.C., Prasad, B. 2010. RiceCAP: Sheath blight QTLs identified in two Bengal/O. nivara advanced backcross populations. In: Proceedings 33rd Rice Technical Working Group Meetings, February 22-25, 2010, Biloxi, MS. CDROM
Snp Haplotypes: Unveiling the Truth of Past Relationships - (Proceedings)
Mcclung, A.M., Zhao, K., Declerck, G., Eizenga, G.C., Ali, M., Bustamante, C.D., Mccouch, S.R. 2010. SNP Haplotypes: Unveiling the Truth of Past Relationships. Rice Technical Working Group Meeting Proceedings. P. 43.
Weed control and yield potential for a promising rice line, STG06L-35-061, selected from crosses between weed-suppressive indicas and commercial long-grain rice - (Proceedings)
Gealy, D.R., Moldenhauer, K.K., Mattice, J.D. 2010. Weed control and yield potential for a promising rice line, STG06L-35-061, selected from crosses between weed-suppressive indicas and commercial long-grain rice. Rice Technical Working Group Meeting Proceedings. CDROM - P. 155.
Phenotypic data collection and management using barcodes, MSExcel and MSAccess - (Proceedings)
Hancock, T.A., McClung, A.M., McCouch, S.R., Eizenga, G.C. 2010. Phenotypic data collection and management using barcodes, MSExcel and MSAccess. In: Proceedings of the 33rd Rice Technical Working Group Meeting Proceedings, February 22-25, 2010, Biloxi, MS. CDROM
Effect of furrow irrigation on the severity of false smut in susceptible rice varieties     Reprint Icon - (Peer Reviewed Journal)
Brooks, S.A., Anders, M.M., Yeater, K.M. 2010. Effect of furrow irrigation on the severity of false smut in susceptible rice varieties. Plant Disease. 94(5):570-574.
Seeing Red: The origin of grain pigmentation in US Weedy rice - (Proceedings)
(01-Jan-10)
The origin of weediness in U.S. red rice - (Abstract Only)
Caicedo, A.L., Reagon, M., Thurber, C.S., Olsen, K.L., Gross, B.L., Jia, Y. 2010. The origin of weediness in U.S. red rice [abstract]. Plant and Animal Genome Conference Proceedings, January 9-13, 2010, San Diego, California. Abstract W629.
Understanding the molecular mechanisms of the instability of rice blast resistance - (Proceedings)
Jia, Y. Understanding the molecular mechanisms of the instability of rice blast resistance. In: Proceedings of Plant and Animal Genome XVIII Conference, January 9-13, 2010, San Diego, CA. p. 521.
Seeing red: The origin of grain pigmentation in US weedy rice - (Peer Reviewed Journal)
Goss, B.L., Reagon, M., Hsu, S., Caicedo, A.L., Jia, Y., Olsen, K.M. 2010. Seeing red: The origin of grain pigmentation in US weedy rice. Molecular Ecology. 19:3380-3393.
A “Rice Diversity Panel” Evaluated For Variation In Agro-Morphological And Grain Quality Traits Among The Genetically Defined Subpopulations - (Abstract Only)
Ali, ML, Eizenga GC, Jia MH, McClung AM, McCouch SR. 2010. A “Rice Diversity Panel” Evaluated for variation in agro-morphological and grain quality traits among the genetically defined subpopulations. 2010. In: Proc. of the Plant & Animal Genomes XVIII Conf. 9-13 Jan. 2010. San Diego, California. Available at: http://www.intl-pag.org/18/abstracts/P05b_PAGXVIII_254.html
Genetic Isolation, Divergence And Gene Flow In O. sativa - (Abstract Only)
McCouch S, Tung, CW, Wright M, Zhao K, Ali, ML Kovach M, Jiang H, Sweeny M, Kimball J, Tyagi W, Imai I, Kim HJ, Reynolds A, Eizenga GC, McClung AM, Bustamante CD,. 2010. Genetic isolation, divergence and gene flow in O. sativa. In: Proc. of the Plant & Animal Genomes XVIII Conf. 9-13 Jan. 2010. San Diego, California. Available at: http://www.intl-pag.org/18/abstracts/W74_PAGXVIII_523.html
Design And Performance Of 44,100 SNP Genotyping Array For Rice - (Abstract Only)
Tung, CW, Wright M, Zhao K, Reynolds A, Montgomery J, Tanimoto G, Barkovich R, Pirani A, Eizenga G, McClung A, Bustamante C, McCouch S. 2010. Design and performance of 44,100 SNP genotyping array for rice In: Proc. of the Plant & Animal Genomes XVIII Conf. 9-13 Jan. 2010. San Diego, California. Available at: http://www.intl-pag.org/18/abstracts/P03e_PAGXVIII_172.html
Linkage Disequilibrium And Genome-Wide Association Studies In O. sativa - (Abstract Only)
Zhao K, Wright M, Tung CW, Reynolds A, Eizenga G, McClung A, McCouch SR, Bustamante CD. 2010. Linkage disequilibrium and genome-wide association studies in O. sativa. In: Proc. of the Plant & Animal Genomes XVIII Conf. 9-13 Jan. 2010. San Diego, California. Available at: http://www.intl-pag.org/18/abstracts/P05b_PAGXVIII_245.html
Development Of Interspecific Cssls In Rice Using SNP-Based Selection - (Abstract Only)
Kim HJ, Eizenga G, Ahn SN, Zhao K, Wright M, Reynolds A, McCouch SR. Development of interspecific CSSLs in rice using SNP-based selection. 2010. In: Proc. of the Plant & Animal Genomes XVIII Conf. 9-13 Jan. 2010. San Diego, California. Available at: http://www.intl-pag.org/18/abstracts/P05b_PAGXVIII_255.html
Structural and expressional analysis of the B-hordein genes in Tibetan hull-less barley - (Peer Reviewed Journal)
Han, Z., Wu, F., Deng, G., Qian, G., Yu, M., Jia, Y. 2009. Structural and expressional analysis of the B-hordein genes in Tibetan hull-less barley. Genetica. 138-227-239.
Evolutionary dynamics of the genomic region around the blast resistance gene Pi-ta in AA genome Oryza species     Reprint Icon - (Peer Reviewed Journal)
Lee, S., Costanzo, S., Jia, Y., Olsen, K.M., Caicedo, A.L. 2009. Evolutionary dynamics of the genomic region around the blast resistance gene Pi-ta in AA genome Oryza species. Genetics. 183:1315-1325.
A diverse collection of purified rice (O. sativa) accessions evaluated for genetic and agro-morphological diversity between sub-populations - (Proceedings)
Eizenga, G.C., Ali, M., Jia, M.H., Kimball, J.A., Bustamante, C.R., Mccouch, S.R., Mcclung, A.M. 2009. A diverse collection of purified rice (O. sativa) accessions evaluated for genetic and agro-morphological diversity between sub-populations. International Rice Genetics Symposium.
A user friendly method to isolate and single spore the fungi Magnaporthe oryzae and Magnaporthe grisea obtained from diseased field samples - (Peer Reviewed Journal)
Jia, Y. 2009. A user friendly method to isolate and single spore the fungi Magnaporthe oryzae and Magnaporthe grisea obtained from diseased field samples. Plant Health Progress. Available: doi:10.1094/PHP-2009-1215-01-BR.
Molecular Plant Pathology: Develop tools and resources for crop protection - (Experiment Station)
(12-Aug-09)
Structural and functional analysis of rice blast avirulence gene AVR-Pita1 in Magnaporthe oryzae - (Experiment Station)
(12-Aug-09)
Alternatively spliced transcripts of Pi-ta blast resistance gene in Oryza sativa     Reprint Icon - (Peer Reviewed Journal)
Costanzo, S., Jia, Y. 2009. Alternatively spliced transcripts of Pi-ta blast resistance gene in Oryza sativa. Plant Science. 177:468-478.
Exploring genetic and spatial structure of U.S. weedy red rice (Oryza sativa L.) populations in relation to rice relatives worldwide - (Peer Reviewed Journal)
Gealy, D.R., Agrama, H., Eizenga, G.C. 2009. Exploring genetic and spatial structure of U.S. weedy red rice (Oryza sativa L.) populations in relation to rice relatives worldwide. Weed Science. 57:627-643.
Effect of cultural management practices on the severity of false smut and kernel smut of rice     Reprint Icon - (Peer Reviewed Journal)
Brooks, S.A., Anders, M.A., Yeater, K.M. 2009. Effect of cultural management practices on the severity of false smut and kernel smut of rice. Plant Disease. 93:1202-1208.
Characterization of Pi-ta Blast resistance gene in an international rice core collection - (Peer Reviewed Journal)
Wang, X., Fjellstrom, R.G., Jia, Y., Yan, W., Jia, M.H., Scheffler, B.E., Wu, D., Shu, Q., McClung, A.M. 2010. Characterization of Pi-ta Blast resistance gene in an international rice core collection. Plant Breeding. 129(5):491-501.
RiceCAP: Comparison of sheath blight QTLs in two Bengal/O. nivara advanced backcross mapping populations - (Abstract Only)
Prasad, B., Eizenga, G.C. 2009. RiceCAP: Comparison of sheath blight QTLs in two Bengal/O. nivara advanced backcross mapping populations. American Society of Agronomy Abstracts.
Artificial introgression of a large fragment around the Pi-ta rice blast resistance gene in backcross progenies and several elite rice cultivars - (Peer Reviewed Journal)
Jia, Y. 2009. Artificial introgression of a large fragment around the Pi-ta rice blast resistance gene in backcross progenies and several elite rice cultivars. Heredity. 103(4):333-339.
Current progress on genetic interactions of rice with rice blast and sheath blight fungi     Reprint Icon - (Peer Reviewed Journal)
Jia, Y., Liu, G., Costanzo, S., Lee, S., Dai, Y. 2009. Current progress on genetic interactions of rice with rice blast and sheath blight fungi. Frontiers of Agriculture in China. 3(3):231-239.
Crop management strategies and disease resistance control the severity of false smut and kernel smut of rice - (Abstract Only)
Brooks, S.A., Anders, M.M., Yeater, K.M. 2009. Crop management strategies and disease resistance control the severity of false smut and kernel smut of rice. American Phytopathology Society 99:S17.
Gene flow from weedy red rice (Oryza sativa L.) to cultivated rice and fitness of hybrids - (Peer Reviewed Journal)
Shivrain, V.K., Burgos, N.R., Gealy, D.R., Salesa, M.A., Smith, K.L. 2009. Gene flow from weedy red rice (Oryza sativa L.) to cultivated rice and fitness of hybrids. Pest Management Science. 65(10):1124-1129.
Non-nutritive mineral effects on rice - (Review Article)
Miller, H.B. 2011. Non-nutritive mineral effects on rice. Plant Stress. 5:82-91.
Rice Nutrition - (Book / Chapter)
(25-Mar-09)
Mapping quantitative trait loci responsible for resistance to rice sheath blight disease using greenhouse assays - (Peer Reviewed Journal)
Liu, G., Jia, Y., Correa-Victoria, F.J., Prado, G.A., Yeater, K.M., McClung, A.M., Correll, J.C. 2009. Mapping quantitative trait loci responsible for resistance to rice sheath blight disease using greenhouse assays. Phytopathology. 99(9):1078-1084.
Factors affecting the outcrossing rate between Clearfield rice and red rice (Oryza sativa)     Reprint Icon - (Peer Reviewed Journal)
Shivrain, V.K., Burgos, N.R., Salesa, M.A., Mauromoustakos, A., Gealy, D.R., Smith, K.L., Black, H.L., Jia, M.H. 2009. Factors affecting the outcrossing rate between Clearfield rice and red rice (Oryza sativa). Weed Science. 57:394-403.
Genetic diversity in red rice from the southern U.S.A. - (Abstract Only)
Shivrain, V.K., Burgos, N.R., Gealy, D.R., Moldenhauer, K.K., Boyett, V.A., Alcober, E.L., Agrama, H.A. 2009. Genetic diversity in red rice from the southern U.S.A. [abstract] Weed Science Society of America Meeting Abstracts. Paper 250.
Do weed-suppressive rice lines maintain weed control at reduced planting densities? - (Abstract Only)
Gealy, D.R., Yan, W. 2009. Do weed-suppressive rice lines maintain weed control at reduced planting densities?. Weed Science Society of America Meeting Abstracts. Vol 49: No 143.
Outcrossing interactions of early-flowering strawhull and late-flowering blackhull red rice (Oryza sativa) with commercial rice varieties - (Abstract Only)
Gealy, D.R. 2009. Outcrossing interactions of early-flowering strawhull and late-flowering blackhull red rice (Oryza sativa) with commercial rice varieties. Weed Science Society of America Meeting Abstracts. Vol 49: No.200.
Oryza nivara, a wild relative of cultivated rice, is a source of genes for improving seedling vigor - (Proceedings)
Eizenga, G.C., Neves, P.F., Agrama, H.A., Bryant, R.J., Mackill, D. 2009. Oryza nivara, a wild relative of cultivated rice, is a source of genes for improving seedling vigor. In: Proceedings of Plant and Animal Genome Conference, January 10-14-2009, San Diego, CA. P. 232.
Structural and functional analysis of the avirulence gene AVR-Pita1 of the rice blast fungus in isolates of Magnaporthe oryzae worldwide - (Abstract Only)
Dai, Y., Jia, Y., Correll, J.C. 2009. Structural and functional analysis of the avirulence gene AVR-Pita1 of the rice blast fungus in isolates of Magnaporthe oryzae worldwide [abstract]. In: Plant and Animal Genome XVII Conference Abstracts. January 10-14, 2009, San Diego, California. P679.
Identification of rice sheath blight QTLs in a Bengal/O. nivara advanced backcross population - (Proceedings)
Prasad, B., Eizenga, G.C. 2009. Identification of rice sheath blight QTLs in a Bengal/O. nivara advanced backcross population. In: Proceedings of Plant and Animal Genome Conference XVII, January 10-14, 2009, San Diego, CA. P. 232.
A diverse collection of purified rice accessions for genomic studies - (Proceedings)
Ali Md. Liakat, Eizenga, G.C., Jia, M.H., Kimball, J.A., Iorga, R., McCouch, S.R., McClung, A.M. 2009. A diverse collection of purified rice accessions for genomic studies. In: Proceedings of Plant and Animal Genome Conference XVII, January 10-14, 2009, San Diego, CA. P. 226.
A genome-wide SNP panel for genetic diversity, mapping and breeding studies in rice - (Proceedings)
Zhao, K., Wright, M., Reynolds, A., Tyagi, W., Kimball, J., Eizenga, G.C., McClung, A.M., Ali, M., Hancock, T., Wood, D., Bustamante, C.D., McCouch, S.R. 2009. A genome-wide SNP panel for genetic diversity, mapping and breeding studies in rice. In: Proceedings of Plant and Animal Genome Conference XVII, January 10-14, 2009, San Diego, CA. P. 146.
Molecular evolution and strong selective sweep at the rice blast resistance gene Pi-ta during crop domestication - (Proceedings)
Lee, S., Jia, Y. 2009. Molecular evolution and strong selective sweep at the rice blast resistance gene Pi-ta during crop domestication. In: Proceedings Plant and Animal Genome XVII Conference, January 10-14, 2009, San Diego,CA. P243.
Mapping two major resistance genes in an indica cultivar Zhe733 to the race IE-1K of Magnaporthe oryzae - (Proceedings)
Lee, S., Wamishe, Y., Jia, Y., Liu, G., Jia, M.H. 2009. Mapping two major resistance genes in an indica cultivar Zhe733 to the race IE-1K of Magnaporthe oryzae. In: Proceedings of Plant and Animal Genome XVII Conference, January 10-14-2009, San Diego, CA. W506.
Origins and evolution of weedy rice in the US - (Proceedings)
Olsen, K.M., Reagon, M., Caicedo, A.L., Gross, B.L., Jia, Y., Lee, S. 2009. Origins and evolution of weedy rice in the US. In: Proceedings of Plant and Animal Genome Conference XVII, January 10-14, 2009, San Diego, CA. W506.
Red rice (Oryza sativa L.) emergence characteristics and influence on rice (O. sativa) yield at different planting dates     Reprint Icon - (Peer Reviewed Journal)
Shivrain, V.K., Burgos, N.R., Gealy, D.R., Smith, K.L., Scott, R.C., Mauromoustakos, A., Black, H.L. 2009. Red rice (Oryza sativa L.) emergence characteristics and influence on rice (O. sativa) yield at different planting dates. Weed Science. 57(1):94-102.
Field resistance expressed when the PI-TA gene is compromised by Magnaporthe oryzae - (Book / Chapter)
Lee, F.N., Cartwright, R.D., Jia, Y., Correll, J.C. 2009. Field resistance expressed when the PI-TA gene is compromised by Magnaporthe oryzae. In: Wang, G.-L., Valen, B., editors. Advances in Genetics, Genomics and Control of Rice Blast Disease. Springer Science and Media. p. 281-290.
Examination of the rice blast pathogen population diversity in Arkansas, USA – Stable or Unstable? - (Book / Chapter)
Correll, J.C., Boza, E.J., Seyran, E., Cartwright, R.D., Jia, Y., Lee, F.N. 2009. Examination of the rice blast pathogen population diversity in Arkansas, USA – Stable or Unstable? In: Wang, X., Balent, B., editors. Advance in Genetics, Genomics, and Control of Rice Blast Disease. Springer, Berlin. p. 217-228.
Signaling in the rice and Rhizoctonia pathosystem - (Proceedings)
(22-Oct-08)
Maximum outcrossing rate and genetic compatibility between red rice (Oryza sativa) biotypes and Clearfield rice - (Peer Reviewed Journal)
Shivrain, V.K., Burgos, N.R., Gealy, D.R., Baquireza, C.J. 2008. Maximum outcrossing rate and genetic compatibility between red rice (Oryza sativa) biotypes and Clearfield rice. Weed Science. 56(6):807-813.
Last Modified: 11/20/2014
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