2008 Annual Report
1a.Objectives (from AD-416)
Objective 1: Strategically expand the genetic diversity in genebank collections and improve associated information for priority Medicago, Trifolium, and Lotus genetic resources.
Sub-objective 3C In cooperation with U. S. and Russian researchers, produce an
Interactive Agricultural Atlas of Russia and Neighboring Countries which will be
accessible on the internet and on CD-ROM.
Sub-objectives 1A. Acquire samples and associated information to fill identified
gaps in the NPGS collections of Medicago, Lotus, and Trifolium.
Sub-sub-objective 1A1. Collect or obtain from the United States, the
Mediterranean Basin, and Central Asia, targeted species.
Sub-sub-objective 1A2. Survey existing holdings of Medicago truncatula
genetic stocks (a model species for legume genomics) and acquire priority
Sub-objective 1B. Identify and establish in situ sites for endemic species of Lotus, and Trifolium.
Sub-sub-objective 1B1. In cooperation with the U. S. Forest Service and other
public land agencies, survey and identify in situ seed collection sites.
Sub-sub-objective 1B2. Using a model trifolium species, define in situ
conservation parameters needed for outcrossing, insect-pollinated wild legume
Sub-objective 1C. Based on earlier research, collaborate with Kazakh researchers to identify and establish sites in Kazakhstan for in situ conservation of wild relatives of alfalfa.
Objective 2: Conserve and regenerate priority Medicago, Trifolium, and Lotus genetic resources efficiently and effectively, and distribute pathogen-tested samples and associated information worldwide.
Sub-objective 2A. Regenerate, conserve, and distribute more than 12,000 accessions of temperate forage legume genetic resources and associated information, emphasizing accessions with low germination, open-pollinated seed stocks, few seeds in storage, or those not yet backed-up at second sites.
Sub-objective 2B. Increase to 90 percent the proportion of the collection backed-up at second sites, emphasizing critical back-ups of Medicago, Trifolium, and Lotus.
Sub-objective 2C. Regenerate 150-300 accessions of Medicago, Trifolium, and Lotus per year, emphasizing controlled pollination of original or “next best” seed lots for Trifolium and Lotus, so as to systematically replace open-pollinated seed lots.
Objective 3: Strategically characterize (“genotype”) and evaluate (“phenotype”) priority Medicago, Trifolium, and Lotus genetic resources for molecular markers, morphological descriptors, and key agronomic traits.
Sub-objective 3A. With cooperators, apply newly developed DNA genetic marker data
to phylogenetic and genetic diversity analyses of priority crops, especially M. truncatula, to develop core subsets. Incorporate characterization data into the Germplasm Resources Information System (GRIN) and/or other databases.
Sub-objective 3B. Update and apply phenotypic descriptors for forage legume
collections with an emphasis on capturing key floral, fruit, and seed characteristics of regenerated germplasm, and characterizing forage nutrient value.
1b.Approach (from AD-416)
Acquisition of new germplasm for these genera will be achieved via plant exploration/collecting and germplasm exchange. On the ground surveys of the Blue Mountains will continue to identify key areas where in situ collection sites can be designated for multiple Trifolium species. Accessions being regenerated will be evaluated for basic descriptors in the field; data will be placed in GRIN. Field evaluations will occur during the flowering year, which is usually the seedling year. Molecular markers will be used for identifying genetic diversity within and among accessions, identifying geographical or environmental associations, and assisting in identification of redundancy and gaps in collections. Formerly 5348-21000-018-00D (3/08).
This progress report addresses the work conducted by the National Temperate Forage Legume Germplasm Resources Unit in Prosser, WA. The project focuses on the problem of effectively maintaining and charactering a large germplasm collection in order to enhance the use and conservation of these important genetic resources. This addresses National Program 301 Action Plan Component 1: Plant and Microbial Genetic Resource Management. Problem Statement 1A: Efficiently and Effectively Manage Plant and Microbial Genetic Resources.
Promoting the conservation of germplasm through acquisition of important resources.
Medicago truncatula is being used as a model legume species in genomic research, but ex situ collections do not include representation of forms from all areas where the species grows. In 2008, the ARS scientists in the Plant Germplasm Introduction and Testing Research Unit in Prosser, Washington, collaborated with Russian and Ukrainian colleagues to collect annual medic seed in the Crimean Peninsula, in Ukraine. We collected over 250 seed samples of important forage legume genetic resources. These new resources may provide breeders with useful traits such as cold tolerance and salt tolerance. This accomplishment aligns with NP 301 Action Plan Component 1: Plant and Microbial Genetic Resource Management. Problem Statement 1A: Efficiently and Effectively Manage Plant and Microbial Genetic Resources.
Promoting the conservation and use of forage legume germplasm through effective maintenance, characterization and distribution.
Effective agricultural production requires the availability of diverse germplasm to support crop research and breeding efforts. ARS scientists and staff in the Plant Germplasm Introduction and Testing Research Unit in Prosser, Washington increased seed on 367 germplasm accessions and completed germination tests on 300 accessions. They also obtained digital images on over 350 accessions and distributed 355 seed packets of Lotus, representing 29 different species; 1832 seed packets of requests for Medicago, representing 53 different species, and 854 requests for Trifolium, representing 21 different species. Because of these efforts, quality seed is available on more accessions in the germplasm collection, providing a valuable resource to scientists studying and breeding forage legumes. This accomplishment aligns with NP 301 Action Plan Component 1: Plant and Microbial Genetic Resource Management. Problem Statement 1A: Efficiently and Effectively Manage Plant and Microbial Genetic Resources.
|Number of Other Technology Transfer||1|
Rojas-Barros, P., Hu, J., Jan, C.C. 2008. Molecular mapping of an apical branching gene of cultivated sunflower (Helianthus annuus L.). Theoretical and Applied Genetics. 117:19-28.
Yue, B., Radi, S.A., Vick, B.A., Cai, X., Tang, S., Knapp, S.J., Gulya, T.J., Miller, J.F., Hu, J. 2008. Identifying quantitative trait loci for resistance to Sclerotinia head rot in two USDA sunflower germplasms. Phytopathology. 98(8):926-931.