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United States Department of Agriculture

Agricultural Research Service

Research Project: GENOMICS AND MOLECULAR APPROACHES TO WHEAT TRAITS

Location: Genomics and Gene Discovery

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Dynamic evolution of Rht-1 homologous regions in grass genomes - (Peer Reviewed Journal)
Wu, J., Kong, X., Shi, C., Gu, Y.Q., Jin, C., Gao, L., Jia, J. 2013. Evolutionary dynamics of Rht-1, a "green revolution" gene homologous regions across the subgenomes, ploids and related grass genomes. PLoS One. 8(9):e75544.
Haplotype variation of Glu-D1 locus and the origin of Glu-D1d allele conferring superior end-use qualities in common wheat - (Peer Reviewed Journal)
Dong, G., Yang, Y., Li, Y., Lou, H., An, X., Dong, L., Gu, Y.Q., Anderson, O.D., Liu, X., Qin, H., Zhang, K., Wang, D. 2013. Haplotype variation of Glu-D1 locus and the origin of Glu-D1d allele conferring superior end-use qualities in common wheat. PLoS One. 8(9):e74859.
Genetic association and disassociation of OPR and LOX genes with resistance to Hessian fly in hexaploid wheat - (Peer Reviewed Journal)
Tan, C.T., Carver, B., Chen, M., Gu, Y.Q., Yan, L. 2013. Genetic association and disassociation of OPR and LOX genes with resistance to Hessian fly in hexaploid wheat. Biomed Central (BMC) Genomics. 14:369.
The B-hordein prolamin family of barley - (Peer Reviewed Journal)
Anderson, O.D. 2013. The B-hordein prolamin family of barley. Genome. 56:179-185.
The gene space in wheat: the complete y-gliadin gene family from the wheat cultivar Chinese Spring - (Peer Reviewed Journal)
Anderson, O.D., Huo, N., Gu, Y.Q. 2013. The gene space in wheat: the complete y-gliadin gene family from the wheat cultivar Chinese Spring. Functional and Integrative Genomics. 10.1007/s10142-013-0321-8.
Systems genetics of environmental response in the mature wheat embryo - (Peer Reviewed Journal)
Munkvold, J.D., Chingcuanco, D.L., Sorrells, M. 2013. Systems genetics of environmental response in the mature wheat embryo. Genetics. doi:10.1534/genetics.113.150052.
A radiation hybrid map of chromosome ID reveals synteny conservation at a wheat speciation locus. - (Peer Reviewed Journal)
Michalak De Jimenez, M.K., Bassi, F.M., Ghavami, F.G., Simons, K., Dizon, R., Setan, R.I., Alnemer, L.M., Denstin, A.M., Dogramaci, M., Simkova, H., Dolezel, J., Seth, K., Luo, M., Dvorak, J., Gu, Y.Q., Kianian, S.F. 2013. Accelerated evolution of the mitochondrial genome in an alloplasmic line of durum wheat. Functional and Integrative Genomics. 13:19-32.
Registration of ‘Dy10-DLC’ wheat - (Peer Reviewed Journal)
Chingcuanco, D.L. 2013. Registration of ‘Dy10-DLC’ wheat. Journal of Plant Registrations. doi: 10.3198/jpr2012.08.0019crg.
Phylogenetic, molecular, and biochemical characterization of caffeic aicd O-methyltransferase (COMT) gene family in Brachypodium distachyon - (Peer Reviewed Journal)
Wu, X., Ju, J., Bragg, J.N., Vogel, J.P., Anderson, O.D., Gu, Y.Q. 2013. Phylogenetic, molecular, and biochemical characterization of caffeic aicd O-methyltransferase (COMT) gene family in Brachypodium distachyon. International Journal of Plant Genomics. doi.org/10.1155/2013/423189.
A new class of wheat gliadin genes and proteins - (Peer Reviewed Journal)
Anderson, O.D., Dong, L., Huo, N., Gu, Y.Q. 2012. A new class of wheat gliadin genes and proteins. PLoS One. 7:e52139.
DNA repair and crossing over favor similar chromosome regions as discovered in radiation hybrid of Triticum - (Peer Reviewed Journal)
Kumar, A., Bassi, F.M., Gu, Y.Q., Dogramaci, M., Kianian, S. 2012. DNA repair and crossing over favor similar chromosome regions as discovered in radiation hybrid of Triticum. Biomed Central (BMC) Genomics. doi 10.1186/1471-2164-13-339.
Isolation and characterization of EMS-induced Dy10 and Ax1 high molecular weight glutenin subunit deficient mutant lines of elite hexaploid wheat (Triticum aestivum L.) cv. Summit - (Peer Reviewed Journal)
Chingcuanco, D.L. 2012. Isolation and characterization of EMS-induced Dy10 and Ax1 high molecular weight glutenin subunit deficient mutant lines of elite hexaploid wheat (Triticum aestivum L.) cv. Summit. Journal of Cereal Science. 56:296-299 doi: 10.1016/j.jcs.2012.06.009.
A tandem segmental duplication (TSD) in the green revolution gene Rht-D1b region underlies plant height variation - (Peer Reviewed Journal)
Li, Y., Xioa, J., Wu, J., Gu, Y.Q., Kong, X. 2012. A tandem segmental duplication (TSD) in the green revolution gene Rht-D1b region underlies plant height variation. New Phytologist. doi: 10.1111/j.1469-8137.2012.04243.x.
New cis-regulatory elements in the Rht-D1b locus region of wheat - (Peer Reviewed Journal)
Duan, J., Wu, J., Gu, Y.Q., Kong, X. 2012. New cis-regulatory elements in the Rht-D1b locus region of wheat. Functional and Integrative Genomics. Available at: http://rd.springer.com/article/10.2007/s10142-012-0283-2. DOI 10.1007/s10142-012-0283-2.
Genotype dependent burst of transposable element expression in crowns of hexaploid wheat (Triticum aestivum L.) during cold acclimation - (Peer Reviewed Journal)
Chingcuanco, D.L., Fowler, B.D. 2012. Genotype dependent burst of transposable element expression in crowns of hexaploid wheat (Triticum aestivum L.) during cold acclimation. Comparative and Functional Genomics. Available at: http://www.hindawi.com/journals/cfg/2012/232530/. doi:10.1155/2012/232530..
Transcriptome profiling and expression analyses of genes critical to wheat adaptation to low temperature - (Peer Reviewed Journal)
Chingcuanco, D.L., Ganeshan, S., You, F., Fowler, B., Chibbar, R., Mcguire, P., Anderson, O.D. 2011. Transcriptome profiling and expression analyses of genes critical to wheat adaptation to low temperature. Biomed Central (BMC) Genomics. 1:299.
Incorporation of high-molecular-weight glutenin subunits into doughs using 2 gram mixograph and extensigraphs - (Peer Reviewed Journal)
Anderson, O.D., Bekes, F. 2011. Incorporation of high-molecular-weight glutenin subunits into doughs using 2 gram mixograph and extensigraphs. Journal of Cereal Science. Volume 34, Issue 3.
Effects of specific domains of high-molecular-weight glutenin subunits’ on dough properties by an in vitro assay - (Peer Reviewed Journal)
Anderson, O.D., Bekes, F., D'Ovidio, R. 2011. Effects of specific domains of high-molecular-weight glutenin subunits’ on dough properties by an in vitro assay. Journal of Cereal Science. 54:280-287.
Gene Space Dynamics during the Evolution of Aegilops tauschii, Brachypodium distachyon, Oryza sativa, and Sorghum bicolor Genomes - (Peer Reviewed Journal)
Massa, A.N., Wanjugi, H., Deal, K.R., Chan, A.P., Gu, Y.Q., Luo, M., Anderson, O.D., Rabinomics, P.D., Dvorak, J., Devos, K.M., O'Brien, K., Maiti, R., You, F. 2011. Gene space dynamics during the evolution of Aegilops tauschii, Brachypodium distachyon, Oryza sativa, and Sorghum bicolor genomes. Molecular Biology and Evolution. Available at: http://mbe.oxfordjournalsorg/content/early/2011/04/06/molbev.msr080.long. DOI: 10.1093/molbev/msr080.
Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes - (Peer Reviewed Journal)
Akhunov, E.D., Akhunova, A., Anderson, O.D., Anderson, J., Blake, N., Clegg, M., Coleman-Derr, D., Conley, E., Crossman, C., Deal, K., Dubcovsky, J., Gill, B., Gu, Y.Q., Hadam, J., Heo, H., Huo, N., Lazo, G.R., Luo, M., Ma, Y., Matthews, D.E., Mcguire, P., Morrell, P., Qualset, C., Renfro, J., Tabanao, D., Talbert, L., Tian, C., Toleno, D., Warburton, M., You, F., Zhang, W., Dvorak, J. 2010. Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes. Biomed Central (BMC) Genomics. 11:702-710.
Physical mapping of a large plant genome using global high-information content fingerprinting: a distal region of wheat chromosome 3DS - (Peer Reviewed Journal)
Fleury, D., Luo, M., Dvorak, J., Ramsay, L., Gill, B., Anderson, O.D., You, F., Schoaei, Z., Deal, K., Langridge, P. 2010. Physical mapping of a large plant genome using global high-information content fingerprinting: a distal region of wheat chromosome 3DS. Genetics. 11:382.
Structural and transcriptional analysis of plant genes encoding the bifunctional lysine ketoglutarate reductase saccharopine dehydrogenase enzyme - (Peer Reviewed Journal)
Anderson, O.D., Coleman-Derr, D., Gu, Y.Q., Heath, S. 2010. Structural and transcriptional analysis of plant genes encoding the bifunctional lysine ketoglutarate reductase saccharopine dehydrogenase enzyme. Biomed Central (BMC) Genomics. 10:113.
Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS. - (Peer Reviewed Journal)
Fleury, D., Luo, M., Dvorak, J., Ramsay, L., Gill, B., Anderson, O.D., You, F., Schoaei, Z., Deal, K., Langridge, P. 2010. Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS. Biomed Central (BMC) Plant Biology. 10:113.
Transcriptomic analysis of starch biosynthesis in the developing grain of hexaploid wheat - (Peer Reviewed Journal)
Stamova, B., Chingcuanco, D.L., Beckles, D. 2010. Transcriptomic analysis of starch biosynthesis in the developing grain of hexaploid wheat. International Journal of Plant Genomics. Available at: http://www.hindawi com/journals/ijpg/2009/407426/. doi:10.1155/2009/407426.
Conserved globulin gene across eight grass genomes identify fundamental units of the loci encoding seed storage proteins - (Peer Reviewed Journal)
Gu, Y.Q., Wanjugi, H., Coleman-Derr, D., Kong, X., Anderson, O.D. 2009. Conserved globulin gene across eight grass genomes identify fundamental units of the loci encoding seed storage proteins. Functional and Integrative Genomics. 10:111-122.
Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv - (Peer Reviewed Journal)
Bai, W., Cai, A., Rz, Z., Li, A., Huo, N., Li, S., Gu, Y.Q., Yabut, L., Jia, J., Qi, Y. 2009. Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv. Functional and Integrative Genomics. 9:532-541.
Structure of the omega-gliadin gene family - (Peer Reviewed Journal)
Anderson, O.D., Gu, Y.Q., Kong, K., Lazo, G.R., Wu, J. 2009. Structure of the omega-gliadin gene family. Functional and Integrative Genomics. 9: 397-410.
Genomics of Quality Traits - (Book / Chapter)
Ma, W., Anderson, O.D., Kuchen, H., Bonnardeaux, Y., Collins, H., Morell, M., Langridge, P., Appels, R. 2009. Genomics of Quality Traits. Genetics and Genomics of the Triticeae. 7:611-651.
Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat - (Peer Reviewed Journal)
Huo, N., Vogel, J.P., Lazo, G.R., You, F., Ma, Y., McMahon, S.A., Dvorak, J., Anderson, O.D., Luo, M., Gu, Y.Q. 2009. Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat. Plant Molecular Biology. 70: 47-61.
Radiation hybrid mapping in crop plants - (Review Article)
Kalavachrla, V., Hossia, K., Gu, Y.Q., Maan, S., Kianian, S. 2009. Radiation hybrid mapping in crop plants. Advances in Agronomy. 102:199-219.
Last Modified: 7/25/2014
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