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United States Department of Agriculture

Agricultural Research Service

Research Project: IMPROVEMENT OF HARD RED SPRING AND DURUM WHEAT FOR DISEASE RESISTANCE AND QUALITY USING GENETICS AND GENOMICS

Location: Cereal Crops Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Review of doubled haploid production in durum and common wheat through wheat x maize hybridization     Reprint Icon - (Peer Reviewed Journal)
Niu, Z., Jiang, A., Abu Hammad, W., Oladzadabbasabadi, A., Xu, S.S., Mergoum, M., Elias, E.M. 2014. Review of doubled haploid production in durum and common wheat through wheat x maize hybridization. Plant Breeding. 133:313-320.
Genetic analysis and molecular mapping of crown rust resistance in common wheat     Reprint Icon - (Peer Reviewed Journal)
Niu, Z., Puri, K.D., Chao, S., Jin, Y., Sun, Y., Steffenson, B.J., Maan, S.S., Xu, S.S., Zhong, S. 2013. Genetic analysis and molecular mapping of crown rust resistance in common wheat. Theoretical and Applied Genetics. 127:609-619.
A genomic comparison of homoeologous recombinants of the Lr19 (T4) translocation in wheat     Reprint Icon - (Peer Reviewed Journal)
Somo, M., Chao, S., Acevedo, M., Zurn, J., Cai, X., Marais, F. 2014. A genomic comparison of homoeologous recombinants of the Lr19 (T4) translocation in wheat. Crop Science. 54:565-575.
Wheat domestication: Key to agricultural revolutions past and future - (Book / Chapter)
(11-Sep-13)
Genetics of tan spot resistance in wheat     Reprint Icon - (Review Article)
Faris, J.D., Liu, Z.H., Xu, S.S. 2013. Genetics of tan spot resistance in wheat. Theoretical and Applied Genetics. 126:2197-2217.
Radiation hybrid QTL mapping of Tdes2 involved in the first meiotic division of wheat     Reprint Icon - (Peer Reviewed Journal)
Bassi, F.M., Kumar, A., Zhang, Q., Paux, E., Huttner, E., Kilian, A., Dizon, R., Feuillet, C., Xu, S.S., Kianian, S.F. 2013. Radiation hybrid QTL mapping of Tdes2 involved in the first meiotic division of wheat. Theoretical and Applied Genetics. 126:1977-1990.
Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landrace and cultivars     Reprint Icon - (Peer Reviewed Journal)
Cavanagh, C., Chao, S., Wang, S., Huang, B.E., Stephan, S., Kiani, S., Forrest, K., Saintenac, C., Brown Guedira, G.L., Akhunova, A., See, D.R., Bai, G., Pumphrey, M.O., Tomar, L., Wong, D., Kong, S., Reynolds, M., Lopez Da Silva, M., Bockelman, H.E., Talbert, L., Anderson, J.A., Dreisigacker, S., Baenziger, S., Carter, A., Korzun, V., Morrell, P.L., Dubcovsky, J., Morell, M., Sorrells, M., Hayden, M., Akhunov, E. 2013. Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landrace and cultivars. Proceedings of the National Academy of Sciences. 110:8057-8062.
Use of GoldenGate assay for SNP genotyping in cereal crops - (Peer Reviewed Journal)
(21-Feb-13)
Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat     Reprint Icon - (Peer Reviewed Journal)
Akhunov, E.D., Sehgal, S., Liang, H., Wang, S., Akhunova, A.R., Kaur, G., Li, W., Forrest, K.L., See, D., Simkova, H., Ma, Y., Hayden, M.J., Luo, M., Faris, J.D., Dolezel, J., Gill, B.S. 2013. Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat. Plant Physiology. 161:252-265.
Dimerization and protease resistance: new insight into the function of PR-1     Reprint Icon - (Peer Reviewed Journal)
Lu, S., Faris, J.D., Sherwood, R., Edwards, M.C. 2013. Dimerization and protease resistance: new insight into the function of PR-1. Journal of Plant Physiology. 170:105-110.
Genetic variation of single nucleotide polymorphisms identified at the mating type locus correlates with form-specific disease phenotype in the barley net blotch fungus Pyrenophora teres     Reprint Icon - (Peer Reviewed Journal)
Lu, S., Edwards, M.C., Friesen, T.L. 2013. Genetic variation of single nucleotide polymorphisms identified at the mating type locus correlates with form-specific disease phenotype in the barley net blotch fungus Pyrenophora teres. European Journal of Plant Pathology. 135(1):49-65.
Homoeology of Thinopyrum junceum and Elymus rectisetus chromosomes to wheat and disease resistance conferred by the Thinopyrum and Elymus chromosomes in wheat     Reprint Icon - (Peer Reviewed Journal)
McArthur, R.I., Zhu, X., Oliver, R.E., Klindworth, D.L., Xu, S.S., Stack, R.W., Wang, R., Cai, X. 2012. Homoeology of Thinopyrum junceum and Elymus rectisetus chromosomes to wheat and disease resistance conferred by the Thinopyrum and Elymus chromosomes in wheat. Chromosome Research. 20:699-715.
Attempted compensation for linkage drag affecting agronomic characteristics of durum wheat 1AS/1DL translocation lines     Reprint Icon - (Peer Reviewed Journal)
Klindworth, D.L., Hareland, G.A., Elias, E.M., Xu, S.S. 2013. Attempted compensation for linkage drag affecting agronomic characteristics of durum wheat 1AS/1DL translocation lines. Crop Science. 53:422-429.
Heterologous expression and functional analysis of the wheat group 1 pathogenesis-related (PR-1) proteins - (Abstract Only)
Dunnell, K.L., Faris, J.D., Friesen, T.L., Edwards, M.C., Lu, S. 2012. Heterologous expression and functional analysis of the wheat group 1 pathogenesis-related (PR-1) proteins. Meeting Abstract. 102:S4.33.
Differential expression of the pathogenesis-related protein 1 (PR-1) gene family in stem rust (Puccinia graminis f. sp. tritici )-wheat interactions - (Abstract Only)
Lu, S., Friesen, T.L., Faris, J.D. 2012. Differential expression of the pathogenesis-related protein 1 (PR-1) gene family in stem rust (Puccinia graminis f. sp. tritici)-wheat interactions. American Phytopathological Society, August 4-8, 2012, Providence, RI. Available: http://www.apsnet.org/meetings/Documents/2012_Meeting_Abstracts/aps12abP582.htm
Genetic mapping analysis of bread-making quality traits in spring wheat     Reprint Icon - (Peer Reviewed Journal)
Simons, K., Anderson, J.A., Mergoum, M., Faris, J.D., Klindworth, D.L., Xu, S.S., Sneller, C., Ohm, J.-B., Hareland, G.A., Edwards, M.C., Chao, S. 2012. Genetic mapping analysis of bread-making quality traits in spring wheat. Crop Science. 52:2182-2197.
Tan spot susceptibility governed by the Tsn1 locus and race-nonspecific resistance quantitative trait loci in a population derived from the wheat lines Salamouni and Katepwa     Reprint Icon - (Peer Reviewed Journal)
Faris, J.D., Abeysekara, N.S., McClean, P.E., Xu, S.S., Friesen, T.L. 2012. Tan spot susceptibility governed by the Tsn1 locus and race-nonspecific resistance quantitative trait loci in a population derived from the wheat lines Salamouni and Katepwa. Molecular Breeding. 30:1669-1678.
Introgression and characterization of a goatgrass gene for a high level of resistance to Ug99 stem rust in tetraploid wheat     Reprint Icon - (Peer Reviewed Journal)
Klindworth, D.L., Niu, Z., Chao, S., Friesen, T.L., Jin, Y., Faris, J.D., Cai, X., Xu, S.S. 2012. Introgression and characterization of a goatgrass gene for a high level of resistance to Ug99 stem rust in tetraploid wheat. Genes|Genomes|Genetics. 2:665-673.
Integration of DNA markers with chromosome engineering for efficient introgression of resistance genes from wild grasses into wheat - (Abstract Only)
Xu, S.S., Niu, Z., Klindworth, D.L., Chao, S., Friesen, T.L., Faris, J.D., Jin, Y., Cai, X., Harris, M.O. 2012. Integration of DNA markers with chromosome engineering for efficient introgression of resistance genes from wild grasses into wheat. Meeting Abstract. pg 15.
Synthetic hexaploids: Harnessing species of the primary gene pool for wheat improvement - (Review Article)
Ogbonnaya, F.C., Abdalla, O., Kazi-Mujeeb, A., Kazi, A.G., Xu, S.S., Gosman, N., Lagudah, E.S., Bonnett, D., Sorrells, M.E. 2013. Synthetic hexaploids: Harnessing species of the primary gene pool for wheat improvement. Plant Breeding Reviews. 37:35-122.
Evaluation and haplotype analysis of elite synthetic hexaploid wheat lines for resistance to Hessian fly     Reprint Icon - (Peer Reviewed Journal)
Yu, G.T., Wang, T., Anderson, K.M., Harris, M.O., Cai, X., Xu, S.S. 2012. Evaluation and haplotype analysis of elite synthetic hexaploid wheat lines for resistance to Hessian fly. Crop Science. 52:752-763.
Identification and mapping of QTLs for FHB resistance in a synthetic hexaploid wheat line - (Abstract Only)
Zhong, S., Chu, C.G., Xu, S.S., Ali, S., Puri, K.D., Mergoum, M., Chao, S. 2011. Identification and mapping of QTLs for FHB resistance in a synthetic hexaploid wheat line. Meeting Abstract. pg 64.
Fusarium head blight resistance in durum wheat – progress and challenge - (Abstract Only)
Cai, X., Elias, E., Xu, S.S., Kianian, S., Zhong, S., Chao, S. 2011. Fusarium head blight resistance in durum wheat – progress and challenge. Meeting Abstract. pg.12.
The insertion of a novel retrotransposon in the promoter of a vernalization gene resulted in early flowering in tetraploid wheat - (Abstract Only)
Chu, C., Tan, C.T., Yui, G., Zhong, S., Xu, S.S., Yan, L. 2012. The insertion of a novel retrotransposon in the promoter of a vernalization gene resulted in early flowering in tetraploid wheat. Meeting Abstract. W706.
Development and characterization of wheat lines with Sr37 for stem rust resistance derived from wild Timopheev's wheat - (Abstract Only)
Zhang, Q., Klindworth, D.L., Friesen, T.L., Chao, S., Jin, Y., Cai, X., Xu, S.S. 2012. Development and characterization of wheat lines with Sr37 for stem rust resistance derived from wild Timopheev's wheat. Meeting Abstract. pg 316.
A novel retrotransposon inserted in the dominant Vm-B1 allele confers spring growth habit in tetraploid wheat (Triticum turgidum L.) - (Peer Reviewed Journal)
Chu, C.G., Tan, C.T., Zhong, S., Xu, S.S., Yan, L. 2011. A novel retrotransposon inserted in the dominant Vm-B1 allele confers spring growth habit in tetraploid wheat (Triticum turgidum L.). Genes, Genomes, Genetics. 1:637:645.
An improved consensus linkage map of barley based on flow-sorted chromosomes and SNP markers - (Peer Reviewed Journal)
Munoz-Amatriain, M., Moscou, M.J., Bhat, P.R., Svensson, J.T., Bartos, J., Suchankova, P., Simkova, H., Endo, T.R., Fenton, R.D., Lonardi, S., Castillo, A.M., Chao, S., Cistue, L., Cuesta-Marcos, A., Forrest, K., Hayden, M.J., Hayes, P.M., Horsley, R.D., Moody, D., Sato, K., Valles, M.P., Wulff, B.B., Muehlbauer, G.J., Dolezel, J., Close, T.J. 2011. An improved consensus linkage map of barley based on flow-sorted chromosomes and SNP markers. The Plant Genome. 4:238-239.
Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat - (Peer Reviewed Journal)
Zhang, Z., Belcram, H., Gornicki, P., Charles, M., Just, J., Huneau, C., Magdelenat, G., Couloux, A., Samain, S., Gill, B.S., Rasmussen, J.B., Barbe, V., Faris, J.D., Chalhoub, B. 2011. Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat. Proceedings of the National Academy of Sciences. 108:18737-18742.
Variable expression of the Stagonospora nodorum effector SnToxA among isolates is correlated with levels of disease susceptibility in wheat - (Peer Reviewed Journal)
Faris, J.D., Zhang, Z., Rasmussen, J.B., Friesen, T.L. 2011. Variable expression of the Stagonospora nodorum effector SnToxA among isolates is correlated with levels of disease susceptibility in wheat. Molecular Plant-Microbe Interactions. 24:1419-1426.
Identification and molecular mapping of two QTLs with major effects for resistance to Fusarium head blight in wheat - (Peer Reviewed Journal)
Chu, C., Niu, Z., Zhong, S., Chao, S., Friesen, T.L., Halley, S., Elias, E.M., Dong, Y., Faris, J.D., Xu, S.S. 2011. Identification and molecular mapping of two QTLs with major effects for resistance to Fusarium head blight in wheat. Theoretical and Applied Genetics. 123(7):1107-1119.
Resistance to recombinant stem rust race TPPKC in hard red spring wheat - (Peer Reviewed Journal)
Klindworth, D.L., Miller, J.D., William, N.D., Xu, S.S. 2011. Resistance to recombinant stem rust race TPPKC in hard red spring wheat. Theoretical and Applied Genetics. 123:603-613.
Altering sexual reproductive mode by interspecific exchange of MAT loci - (Peer Reviewed Journal)
Lu, S., Yun, S., Lee, T., Turgeon, B. 2011. Altering sexual reproductive mode by interspecific exchange of MAT loci. Fungal Genetics and Biology. 48:714-724.
Molecular characterization and genomic mapping of the pathogenesis-related protein 1 (PR-1) gene family in hexaploid wheat (Triticum aestivum L.) - (Peer Reviewed Journal)
Lu, S., Friesen, T.L., Faris, J.D. 2011. Molecular characterization and genomic mapping of the pathogenesis-related protein 1 (PR-1) gene family in hexaploid wheat (Triticum aestivum L.). Molecular Genetics and Genomics. 285:485-503.
Mapping and validation of Yr48 and other QTL conferring partial resistance to broadly virulent post-2000 North American races of stripe rust in hexaploid wheat - (Peer Reviewed Journal)
Lowe, I., Jankuloski, L., Chao, S., Chen, X., See, D.R., Dubcovsky, J. 2011. Mapping and validation of Yr48 and other QTL conferring partial resistance to broadly virulent post-2000 North American races of stripe rust in hexaploid wheat. Theoretical and Applied Genetics. 123:143-157.
Chromosome engineering of wheat stem rust resistance gene Sr47 in a tetraploid wheat background - (Abstract Only)
Klindworth, D.L., Niu, Z., Chao, S., Friesen, T.L., Faris, J.D., Jin, Y., Cai, X., Xu, S.S. 2011. Chromosome engineering of wheat stem rust resistance gene Sr47 in a tetraploid wheat background. Meeting Abstract. pg. 182.
Use of The Yeast Two-Hybrid System to Identify Targets of Fungal Effectors - (Book / Chapter)
Lu, S. 2012. Use of the yeast two-hybrid system to identify targets of fungal effectors. In: M. Bolton & B. Thomma (eds), Plant Fungal Pathogens: Methods and Protocols, Methods in Molecular Biology 835:165-189.
The genetics of winterhardiness in barley: Perspectives from genome-wide association mapping - (Peer Reviewed Journal)
Zitzewitz, J., Condon, F., Corey, A., Cuesta-Marcos, A., Filichkin, T., Haggard, K., Fisk, S.P., Smith, K.P., Muehlbauer, G.J., Karsai, I., Veisz, O., Chao, S., Castro, A.J., Gutierrez, L., Hayes, P.M. 2011. The genetics of winterhardiness in barley: Perspectives from genome-wide association mapping. The Plant Genome. 4:76-91.
Comparative Mapping of the Oregon Wolfe Barley Using Doubled Haploid Lines Derived from Female and Male Gametes - (Peer Reviewed Journal)
Cistué, L., Chao, S., Chutimanitsakun, Y., Corey, A., Cuesta-Marcos, A., Echávarri, B., Filichkina, T., Garcia-Mariño, N., Romagosa, I., Hayes, P.M. 2011. Comparative Mapping of the Oregon Wolfe Barley Using Doubled Haploid Lines Derived from Female and Male Gametes. Theoretical and Applied Genetics. 122:1399-1410.
Population-Specific Patterns of Linkage Disequilibrium and SNP Variation in Spring and Winter Polyploid Wheat - (Peer Reviewed Journal)
Chao, S., Dubcovsky, J., Dvoral, J., Luo, M., Baenziger, S.P., Matnyazov, R., Clark, D.R., Talbert, L., Anderson, J.A., Dreisigacker, S., Glover, K., Chen, J., Campbell, K., Bruckner, P.L., Rudd, J.C., Haley, S., Carver, B.F., Sims, R., Sorrells, M.E., Akhunov, E.D. 2010. Population-Specific Patterns of Linkage Disequilibrium and SNP Variation in Spring and Winter Polyploid Wheat. Biomed Central (BMC) Genomics. 11:727.
Targeted introgression of a wheat stem rust resistance gene by DNA marker-assisted chromosome engineering genetics - (Peer Reviewed Journal)
Niu, Z., Klindworth, D.L., Friesen, T.L., Chao, S., Jin, Y., Cai, X., Xu, S.S. 2011. Targeted introgression of a wheat stem rust resistance gene by DNA marker-assisted chromosome engineering genetics. Genetics. 187(4):1011-1021.
Introgression of two major FHB-resistance QTLs into durum and hard red spring wheat - (Abstract Only)
Xu, S.S., Chu, C., Friesen, T.L., Chao, S., Zhong, S., Halley, S., Cai, X., Elias, E.M. 2010. Introgression of two major FHB-resistance QTLs into durum and hard red spring wheat. Meeting Abstract. pg. 172.
Fighting against FHB – an excellent novel resistance source for future wheat breeding - (Abstract Only)
Chu, C., Zhong, S., Chao, S., Friesen, T.L., Halley, S., Elias, E.M., Faris, J.D., Xu, S.S. 2010. Fighting against FHB – an excellent novel resistance source for future wheat breeding. Meeting Abstract. pg. 14.
Tracing the Origin of the fungal Sex a1 domain places its ancestor in the HMG-box superfamily: implication for fungal mating-type evolution - (Peer Reviewed Journal)
Martin, T., Lu, S., Tilbeurgh, H., Ripoll, D., Dixelius, C., Turgeon, B.G., Debuchy, R. 2010. Tracing the Origin of the fungal Sex a1 domain places its ancestor in the HMG-box superfamily: implication for fungal mating-type evolution. PLoS One. 5(12):e15199.
Analysis of genetic diversity using SNP markers in oat - (Abstract Only)
Chao, S., Oliver, R.E., Lazo, G.R., Tinker, N., Jannink, J., Redman, R.R., Jackson, E.W. 2011. Analysis of genetic diversity using SNP markers in oat. Meeting Abstract. pg. 209.
Molecular and genetic characterization of Hessian fly-resistance genes in synthetic hexaploid wheat - (Abstract Only)
Xu, S.S., Yu, G., Cai, X., Harris, M. 2010. Molecular and genetic characterization of Hessian fly-resistance genes in synthetic hexaploid wheat. Meeting Abstract. 157.
Molecular marker-assisted alien gene introgression of Sr39 for wheat stem rust resistance derived from Aegilops speltoides - (Abstract Only)
Niu, Z., Klindworth, D.L., Friesen, T.L., Chao, S., Jin, Y., Cai, X., Xu, S.S. 2011. Molecular marker-assisted alien gene introgression of Sr39 for wheat stem rust resistance derived from Aegilops speltoides. Meeting Abstract. 195.
Marker Development and Saturation Mapping of the Tan Spot Ptr ToxB Sensitivity locus Tsc2 in Hexaploid Wheat - (Peer Reviewed Journal)
Abeysekara, N.S., Friesen, T.L., Liu, Z., Mcclean, P.E., Faris, J.D. 2010. Marker Development and Saturation Mapping of the Tan Spot Ptr ToxB Sensitivity locus Tsc2 in Hexaploid Wheat. The Plant Genome. 3:179-189.
Two Putatively Homoeologous Wheat Genes Mediate Recognition of SnTox3 to Confer Effector-triggered Susceptibility to Stagonospora nodorum - (Peer Reviewed Journal)
Zhang, Z., Friesen, T.L., Xu, S.S., Shi, G., Liu, Z., Rasmussen, J., Faris, J.D. 2011. Two Putatively Homoeologous Wheat Genes Mediate Recognition of SnTox3 to Confer Effector-triggered Susceptibility to Stagonospora nodorum. Plant Journal. 65:27-38.
Comparative analysis of genetic background in eight near-isogenic wheat lines with different H genes conferring resistance to Hessian fly - (Peer Reviewed Journal)
Xu, S.S., Chu, C.G., Harris, M., Williams, C.E. 2010. Comparative analysis of genetic background in eight near-isogenic wheat lines with different H genes conferring resistance to Hessian fly. Genome. 54:81–89.
Mating Type (MAT) Locus -Specific PCR Markers for Differentiation of Pyrenophora teres f. teres and P. teres f. maculata, the Causal Agents of Barley Net Blotch - (Peer Reviewed Journal)
Lu, S., Platz, G., Edwards, M.C., Friesen, T.L. 2010. Mating Type (MAT) Locus -Specific PCR Markers for Differentiation of Pyrenophora teres f. teres and P. teres f. maculata, the Causal Agents of Barley Net Blotch. Phytopathology. 100(12):1298-1306.
Genetic mapping of stem rust resistance gene Sr13 in tetraploid wheat (Triticum turgidum subsp. durum L.) - (Peer Reviewed Journal)
Simons, K.J., Abate, Z., Chao, S., Zhang, W., Rouse, M., Jin, Y., Elias, E., Dubcovsky, J. 2011. Genetic mapping of stem rust resistance gene Sr13 in tetraploid wheat (Triticum turgidum subsp. durum L.). Theoretical and Applied Genetics. 122:649-658.
A Unique Wheat Disease Resistance-like Gene Governs Effector-Induced Susceptibility to Necrotrophic pathogens - (Peer Reviewed Journal)
Faris, J.D., Zhang, Z., Lu, H., Lu, S., Cloutier, S., Fellers, J.P., Meinhardt, S.W., Rasmussen, J.B., Xu, S.S., Oliver, R.P., Simons, K.J., Friesen, T.L. 2010. A Unique Wheat Disease Resistance-like Gene Governs Effector-Induced Susceptibility to Necrotrophic pathogens. Proceedings of the National Academy of Sciences. 107:13544-13549.
Large-Scale SNP Marker Development and Genotyping in Oat - (Abstract Only)
Chao, S., Oliver, R.E., Lazo, G.R., Tinker, N., Jackson, E.W. 2010. Large-Scale SNP Marker Development and Genotyping in Oat. Proceedings of The 5th European Oat Conference, September 1-3, 2010, Ystad, Sweden. P.43.
Targeted mapping of Cdu1, a major locus regulating grain cadmium concentration in durum wheat (Triticum turgidum L. var durum) - (Peer Reviewed Journal)
Wiebe, K., Pozniak, C.J., Harris, N., Faris, J.D., Clarke, J.M., Knox, R.E., Taylor, G. 2010. Targeted mapping of Cdu1, a major locus regulating grain cadmium concentration in durum wheat (Triticum turgidum L. var durum). Theoretical and Applied Genetics. 121:1047-1058.
Evaluation and characterization of high-molecular weight 1D glutenin subunits from Aegilops tauschii in synthetic hexaploid wheats - (Peer Reviewed Journal)
Xu, S.S., Khan, K., Klindworth, D.L., Nygard, G. 2010. Evaluation and characterization of high-molecular weight 1D glutenin subunits from Aegilops tauschii in synthetic hexaploid wheats. Journal of Cereal Science. 52:333-336.
Genome-wide Association Mapping of Fusarium Head Blight Resistance in Contemporary Barley Breeding Germplasm - (Peer Reviewed Journal)
Massman, J., Cooper, B., Horsley, R., Neate, S., Dill-Macky, R., Chao, S., Dong, Y., Muehlbauer, G., Smith, K. 2011. Genome-wide Association Mapping of Fusarium Head Blight Resistance in Contemporary Barley Breeding Germplasm. Molecular Breeding. 27:439-454.
Development of PCR-based Markers for Marker-Assisted Selection of H26 and H32 for Hessian Fly Resistance - (Abstract Only)
Yu, G.T., S.S. Xu, M.O. Harris, X. Cai, C.E. Williams, Y.-Q. Gu, and M.-C. Luo. 2010. Development of PCR-based markers for marker-assisted selection of H26 and H32 for Hessian fly resistance. p. 328. In: Abstract of Oral and Poster Presentations, 8th International Wheat Conference, June 1 - 4, St. Petersburg, Russia.
Dissection of effector-induced host susceptibility pathways in Stagonospora nodorum blotch of wheat - (Abstract Only)
Lu, S., Friesen, T.L., Faris, J.D. 2010. Dissection of effector-induced host susceptibility pathways in Stagonospora nodorum blotch of wheat.Phytopathology 100:S151
Association Mapping of Spot Blotch Resistance in Wild Barley     Reprint Icon - (Peer Reviewed Journal)
Roy, J.K., Smith, K.P., Muehlbauer, G.J., Chao, S., Close, T.J., Steffenson, B.J. 2010. Association Mapping of Spot Blotch Resistance in Wild Barley . Molecular Breeding. 26:243-256.
Genetic Variation of Seed Dormancy in Synthetic Hexaploid Wheat-Derived Populations - (Peer Reviewed Journal)
Gu, X., Zhang, L., Glover, K., Chu, C., Xu, S.S., Faris, J.D., Friesen, T.L., Ibrahim, A. 2010. Genetic Variation of Seed Dormancy in Synthetic Hexaploid Wheat-Derived Populations. Crop Science. 50:1318-1324.
Marker-assisted Characterization of Durum Wheat Langdon-Golden Ball Disomic Substitution Lines - (Peer Reviewed Journal)
Xu, S.S., Chu, C.G., Chao, S., Klindworth, D.L., Faris, J.D., Elias, E.M. 2010. Marker-assisted Characterization of Durum Wheat Langdon-Golden Ball Disomic Substitution Lines. Theoretical and Applied Genetics.120:1575-1585
Ploidy-Dependent Unreductional Meiotic Cell Division in Polyploid Wheat - (Peer Reviewed Journal)
Cai, X., Xu, S.S., Zhu, X. 2010. Ploidy-Dependent Unreductional Meiotic Cell Division in Polyploid Wheat. Chromosoma. 119:275-285
Molecular and cytogenetic characterization of wheat introgression lines carrying the stem rust resistance gene Sr39. - (Peer Reviewed Journal)
Yu, G., Zhang, Q., Klindworth, D.L., Friesen, T.L., Knox, R., Jin, Y., Zhong, S., Cai, X., Xu, S.S. 2010. Molecular and Cytogenetic Characterization of Aegilops Speltoides Chromosome Segments Carrying Sr39 in the Original Translocation Stock and Derived Wheat Lines. Crop Science. 50:1393–1400.
Identification of Chromosome Locations of Genes Affecting pre-Harvest Sprouting and Seed Dormancy using Chromosome Substitution Lines in Tetraploid Wheat (Triticum turgidum L.) - (Peer Reviewed Journal)
Chao, S., Xu, S.S., Elias, E., Faris, J.D., Sorrells, M. 2010. Identification of Chromosome Locations of Genes Affecting pre-Harvest Sprouting and Seed Dormancy using Chromosome Substitution Lines in Tetraploid Wheat (Triticum turgidum L.). Crop Science. 50:1180-1187
Pathogen Exploitation of Gene-for-Gene Resistance Mechanisms in the Wheat-Stagonospora nodorum Pathosystem - (Abstract Only)
Faris, J.D., Zhang, Z., Lu, S., Lu, H., Reddy, L., Cloutier, S., Fellers, J.P., Meinhardt, S.W., Rasmussen, J.B., Xu, S.S., Simons, K.J., Friesen, T.L. 2010. Pathogen Exploitation of Gene-for-Gene Resistance Mechanisms in the Wheat-Stagonospora nodorum Pathosystem. Meeting Abstract. pg.136
Two Homoeologous Wheat Genes Confer Sensitivity to a Single Host-Selective Toxin and Susceptibility to Stagonospora nodorum blotch (SNB) - (Abstract Only)
Zhang, Z., Friesen, T.L., Shi, G., Rasmussen, J.B., Faris, J.D. 2010. Two Homoeologous Wheat Genes Confer Sensitivity to a Single Host-Selective Toxin and Susceptibility to Stagonospora nodorum blotch (SNB). Meeting Abstract. pg 188
Development and Implementation of High-Throughput SNP Genotyping in Barley     Reprint Icon - (Peer Reviewed Journal)
Close, T.J., Bhat, P., Lonardi, S., Wu, Y., Rostoks, N., Ramsay, L., Druka, A., Stein, N., Svensson, J., Wanamaker, S., Bozdag, S., Roose, M., Moscou, M., Chao, S., Varshney, R., Szucs, P., Sato, K., Hayes, P., Matthews, D.E., Kleinhofs, A., Muehlbauer, G., Deyoung, J., Marshall, D.F., Madishetty, K., Fenton, R.D., Condamine, P., Graner, A., Waugh, R. 2009. Development and Implementation of High-Throughput SNP Genotyping in Barley. Biomed Central (BMC) Genomics. 10:582.
Development of Durum Wwheat Germplasm with Enhanced Resistance to Fusarium Head Blight Derived from Emmer Wheat - (Abstract Only)
Xu, S.S., Friesen, T.L., Chu, C.C., Halley, S., Zhong, S.B., Cai, X., Elias, E.M. 2009. Development of Durum Wwheat Germplasm with Enhanced Resistance to Fusarium Head Blight Derived from Emmer Wheat. Fusarium Head Blight Forum Dec 6-9, 2009; Orlando, Fl. Lexington, KY: University of Kentucky. Pg. 160
Genetic Maps of Stem Rust Resistance Gene Sr13 in Tetraploid Wheat - (Abstract Only)
Simons, K.J., Abate, Z., Chao, S., Zhang, W., Rouse, M., Jin, Y., Dubcovsky, J. 2010. Genetic Maps of Stem Rust Resistance Gene Sr13 in Tetraploid Wheat. Proceedings of Plant and Animal Genome Conference. p. 302, San Diego, CA Jan 9-13, 2010.
Identification and Characterization of a Novel Host-Toxin Interaction in the Wheat - Stagonospora Nodorum Pathosystem - (Peer Reviewed Journal)
Abeysekara, N., Friesen, T.L., Keller, B., Faris, J.D. 2009. Identification and Characterization of a Novel Host-Toxin Interaction in the Wheat - Stagonospora Nodorum Pathosystem. Theoretical and Applied Genetics. 120:117-126
Identification of Novel Tan Spot Resistance QTLs Using an SSR-Based Linkage Map of Tetraploid Wheat     Reprint Icon - (Peer Reviewed Journal)
Chu, C., Chao, S., Friesen, T.L., Faris, J.D., Zhong, S., Xu, S.S. 2009.Novel Tan Spot Resistance QTLs Detected Using an SSR-Based Linkage Map of Tetraploid Wheat. Molecular Breeding. 25:327-338.
Quantitative Trait Loci Influencing Grain Hardness in Hard Red Spring Wheat Breeding Lines MN98550 and MN99394 - (Abstract Only)
Tsilo, T.J., Hareland, G.A., Chao, S., Simsek, S., Anderson, J.A. 2009. Quantitative Trait Loci Influencing Grain Hardness in Hard Red Spring Wheat Breeding Lines MN98550 and MN99394. Meeting Abstract 167-7
Genetic Diversity of Polyketide Synthase/Nonribosomal Peptide Synthetase Genes in Isolates of the Barley Net Blotch Fungus Pyrenophora teres f. teres - (Abstract Only)
Lu, S., Friesen, T.L. 2009. Genetic Diversity of Polyketide Synthase/Nonribosomal Peptide Synthetase Genes in Isolates of the Barley Net Blotch Fungus Pyrenophora teres f. teres. Meeting Abstract 99:S77
Evaluation and Characterization of Seedling Resistances to Stem Rust Ug99 Races in Wheat-Alien Species Derivatives - (Peer Reviewed Journal)
Xu, S.S., Jin, Y., Klindworth, D.L., Wang, R., Cai, X. 2009. Evaluation and Characterization of Seedling Resistances to Stem Rust Ug99 Races in Wheat-Alien Species Derivatives. Crop Science. 49:2167–2175.
Re-Evaluation of a Tetraploid Wheat Population Indicates That the Tsn1-ToxA Interaction is the Only Factor Governing Stagonospora Nodorum Blotch Susceptibility - (Peer Reviewed Journal)
Faris, J.D., Friesen, T.L. 2009. Re-Evaluation of a Tetraploid Wheat Population Indicates That the Tsn1-ToxA Interaction is the Only Factor Governing Stagonospora Nodorum Blotch Susceptibility. Phytopathology. 99:(8) 906-912
Identification of ToxA-Interacting Proteins Suggests a Possible Role for Pathogenesis-Related Protein 1(PR-1) in Mediating Stagonospora Nodorum-wheat Interactions - (Abstract Only)
Lu, S., Friesen, T.L., Faris, J.D. 2009. Identification of ToxA-Interacting Proteins Suggests a Possible Role for Pathogenesis-Related Protein 1(PR-1) in Mediating Stagonospora Nodorum-wheat Interactions. Meeting Abstract. p. 97.
An integrated resource for barley linkage map and malting quality QTL alignment     Reprint Icon - (Peer Reviewed Journal)
Szucs, P., Blake, V.C., Chao, S., Marcos-Cuesta, A., Muehlbauer, G.J., Ramsay, L., Waugh, R., Hayes, P.M. 2009. An integrated resource for barley linkage map and malting quality QTL alignment. The Plant Genome. 2(2):134-140, 2009
New source of TTKSK resistance derived from Thinopyrum and Aegilops species - (Abstract Only)
Xu, S.S., Jin, Y. 2009. New source of TTKSK resistance derived from Thinopyrum and Aegilops species. pg. 18. In: Poster Abstract of Borlaug Global Rust Initiative (BGRI) 2009 Technical Workshop Cuidad Obregon, Sonora, Mexico, March 17-20, 2009 Meeting Abstract
Agronomic and Quality Characteristics of Two New Sets of Langdon Durum – wWld Emmer Wheat Chromosome Substitution Lines - (Peer Reviewed Journal)
Klindworth, D.L., Hareland, G.A., Elias, E.M., Faris, J.D., Chao, S., Xu, S.S. 2009. Agronomic and Quality Characteristics of Two New Sets of Langdon Durum – wWld Emmer Wheat Chromosome Substitution Lines. Journal of Cereal Science 50: 29-35
Physical Localization and Genetic Mapping of Fertility Restoration Gene Rfo in Canola (Brassica napus L.) - (Peer Reviewed Journal)
Feng, J., Primomo, V., Zhang, Y., Jan, C., Tulsieram, L., Xu, S.S. 2009. Physical Localization and Genetic Mapping of Fertility Restoration Gene Rfo in Canola (Brassica napus L.). Genome. 52:401-407
Haplotype analysis of genes for Fusarium head blight resistance in tetraploid wheat germplasm - (Abstract Only)
Chu, C., Chao, S., Cai, X., Zhong, S., Xu, S.S. 2008. Haplotype analysis of genes for Fusarium head blight resistance in tetraploid wheat germplasm. In: Canty, S.M., E. Walton, A. Clark., D. Ellis. J. Mundell, and D.A. Van Sanford (Eds.), Proceedings of the National Fusarium Head Blight Forum; 2008 Dec 2-4; Indianapolis, IN. Lexington, KY: University of Kentucky. pp.156
Introgression of FHB Resistance from Alien Species-Derived Lines into Spring Wheat - (Abstract Only)
Zhang, Q., Oliver, R.E., Mcarthur, R.I., Chao, S., Stack, R.W., Zhong, S., Xu, S.S., Cai, X. 2008. Introgression of FHB Resistance from Alien Species-Derived Lines into Spring Wheat. Meeting Abstract. In: Canty, S.M., E. Walton, A. Clark., D. Ellis. J. Mundell, and D.A. Van Sanford (Eds.), Proceedings of the National Fusarium Head Blight Forum; 2008 Dec 2-4; Indianapolis, IN. Lexington, KY: University of Kentucky. pp.219
The concurrence of Stagonospora nodorum blotch resistance with host-selective toxin insensitivity in tetraploid wheat - (Abstract Only)
Chu, C., Friesen, T.L., Chao, S., Faris, J.D., Xu, S.S. 2008. The concurrence of Stagonospora nodorum blotch resistance with host-selective toxin insensitivity in tetraploid wheat. National Wheat Genomics Conference. p. 9 (NWGC), December 4-6, 2008, Indianapolis, IN
Fine Mapping of Hessian Fly Resistance Gene H26 in an Aegilops tauschii Population - (Abstract Only)
Yu, G., Harris, M.O., Cai, X., Xu, S.S. 2009. Fine Mapping of Hessian Fly Resistance Gene H26 in an Aegilops tauschii Population. Plant and Animal Genome Conference. Jan 10-14, 2009 San Diego Ca
Identification and validation of SSR markers linked to the stem rust resistance gene Sr6 on the short arm of chromosome 2D in wheat     Reprint Icon - (Peer Reviewed Journal)
Tsilo, T., Chao, S., Jin, Y., Anderson, J. 2009. Identification and validation of SSR markers linked to the stem rust resistance gene Sr6 on the short arm of chromosome 2D in wheat. Theoretical and Applied Genetics. 118:515-524
A Point Mutation Demonstrating the Pleiotropic Effects of the Domestication Gene Q in Hexaploid Wheat - (Abstract Only)
Zhang, Z., Gill, B.S., Faris, J.D. 2008. A Point Mutation Demonstrating the Pleiotropic Effects of the Domestication Gene Q in Hexaploid Wheat. Plant and Animal Genome Conference XVII, p. 686
Map-Based Cloning of the Fungal Toxin Sensitivity Gene Tsn1 in Wheat - (Abstract Only)
Faris, J.D., Zhang, Z., Lu, H., Reddy, L., Lu, S., Simons, K.J., Fellers, J.P., Friesen, T.L. 2009. Map-Based Cloning of the Fungal Toxin Sensitivity Gene Tsn1 in Wheat. Plant and Animal Genome Conference XVII abstracts p. 305
New DNA Markers for High Molecular Weight Glutenin Subunits in Wheat     Reprint Icon - (Peer Reviewed Journal)
Liu, S., Chao, S., Anderson, J.A. 2008. New DNA Markers for High Molecular Weight Glutenin Subunits in Wheat. Theoretical and Applied Genetics. 118:177-183
Qtl Analysis of Pasta Quality Using a Composite Microsatellite - Snp Map of Durum Wheat     Reprint Icon - (Peer Reviewed Journal)
Zhang, W., Chao, S., Manthey, F., Chicaiza, O., Brevis, J.C., Echenique, J., Dubcovsky, J. 2008. Qtl analysis of pasta quality using a composite microsatellite - snp map of durum wheat. Theoretical and Applied Genetics. 117:1361-1377
Molecular and cytogenetic characterization of a durum wheat Aegilops speltoides chromosome translocation conferring resistance to stem rust - (Peer Reviewed Journal)
Faris, J.D., Xu, S.S., Xiwen, C., Friesen, T.L., Jin, Y. 2008. Molecular and cytogenetic characterization of a durum wheat Aegilops speltoides chromosome translocation conferring resistance to stem rust. Chromosome Research. 16(8): 1097-1105.
Identification of chromosomes responsible for crown rot resistance in durum wheat - (Proceedings)
Zheng, Z., H.B. Li, J. Ma, S. Chakraborty, J.D. Faris, S.S. Xu, and C.J. Liu. 2008. Identification of chromosomes responsible for crown rot resistance in durum wheat. In: R. Appels, R. Eastwood, E. Lagudah, P. Langridge, M. Mackay, L. McIntye, and P. Sharp (Eds.) Proc. 11th Wheat Genet. Symp., vol. 3. Sydney University Press, Sydney, Australia. Pp 770-772.
Alien Introgression for FHB Resistance in Wheat - Challenges and Strategies - (Proceedings)
Cai, X., Xu, S.S., Oliver, R.E., Zhang, Q., Stack, R.W., Zhong, S., Friesen, T.L., Halley, S., Elias, E.M. 2008. Alien introgression for FHB resistance in wheat - Challenges and strategies. In: R. Appels, R. Eastwood, E. Lagudah, P. Langridge, M. Mackay, L. McIntye, and P. Sharp (Eds.) Proc. 11th Wheat Genet. Symp., vol. 3. Sydney University Press, Sydney, Australia. Pp 716-718.
Development of a Set of Stem Rust Susceptible D-Genome Disomic Substitutions Based on Rusty durum - (Proceedings)
Klindworth, D.L., and Xu S.S. 2008. Development of a set of stem rust susceptible D-genome disomic substitutions based on rusty durum. In: R. Appels, R. Eastwood, E. Lagudah, P. Langridge, M. Mackay, L. McIntye, and P. Sharp (Eds.) Proc. 11th Int. Wheat Genet. Symp., vol. 2. Sydney University Press, Sydney, Australia. Pp 367-369.
Chromosome Location and Characterization of Genes for Grain Protein Content in Triticum dicoccoides - (Proceedings)
Xu, S.S., D.L. Klindworth, G.A. Hareland, E.M. Elias, J.D. Faris, and S. Chao. 2008. Chromosome location and characterization of genes for grain protein content in Triticum dicoccoides. In: R. Appels, R. Eastwood, E. Lagudah, P. Langridge, M. Mackay, L. McIntye, and P. Sharp (Eds.) Proc. 11th Int. Wheat Genet. Symp., vol. 2. Sydney University Press, Sydney, Australia. Pp 572-574.
Chromosome engineering to enhance utility of alien-derived stem rust resistance - (Proceedings)
Xu, S.S., I.S. Dundas, M.O. Pumphrey, Y. Jin, J.D. Faris, X. Cai, L.L. Qi, B.R. Friebe, and B.S. Gill. 2008. Chromosome engineering to enhance utility of alien-derived stem rust resistance. In: R. Appels, R. Eastwood, E. Lagudah, P. Langridge, M. Mackay, L. McIntye, and P. Sharp (Eds.) Proc. 11th Int. Wheat Genet. Symp., vol. 1. Sydney University Press, Sydney, Australia. Pp 12-14.
Genetics of host-pathogen interactions in the wheat-Stagonospora nodorum pathosystem - (Proceedings)
Faris, J.D., Lu, H.J., Zhang, Z., Liu, Z.H., Xu, S.S., Chu, C.G., Abeysekara, N., Fellers, J.P., Cloutier, S., Keller, B., Scofield, S.R., Friesen, T.L. 2008. Genetics of host-pathogen interactions in the wheat-Stagonospora nodorum pathosystem. International Wheat Conference Proceedings. Australia Aug 24-29
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