Page Banner

United States Department of Agriculture

Agricultural Research Service

Research Project: Germplasm Enhancement and Genetic Improvement of Cotton Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Age chronosequence effects on restoration quality of reclaimed coal mine soils in Mississipian agroecosystems     Reprint Icon - (Peer Reviewed Journal)
Adeli, A., Brooks, J.P., McLaughlin, M.R., Read, J.J., Willers, J.L., Lang, D., McGrew, R. 2013. Age chronosequence effects on restoration quality of reclaimed coal mine soils in Mississipian agroecosystems. Soil Science. 178:335-343.
Efect of tri-species chromosome shuffling on agronomic and fiber traits in Upland cotton - (Abstract Only)
(01-May-13)
Identification and characterization of a CLE domain-containing protein from Rotylenchulus reniformis - (Abstract Only)
Gavilano, L., Baum, T.J., Parrott, W.A., Davis, E.L., Wubben, M. 2013. Identification and characterization of a CLE domain-containing protein from Rotylenchulus reniformis. Proceedings Society of Nematologists, July 14-17, 2013, Knoxville, TN. CD ROM.
Pollen genotyping in cotton for genetic linkage analysis - (Abstract Only)
Aziz, A., Jenkins, J.N., McCarty Jr, J.C., Stelly, D.M., Saha, S. 2013. Pollen genotyping in cotton for genetic linkage analysis. Proceedings Research: Celebrating Excellence, April 1-5, 2013, Nashville, TN. CD ROM.
Hypoaneuploid chromosome substitution F1 hybrids of Gossypium hirsutum L. x G. mustellinum Miers ex Watt     Reprint Icon - (Peer Reviewed Journal)
Saha, S., Raska, D.A., Stelly, D.M., Manchali, S., Gutierrez, O.A. 2013. Hypoaneuploid chromosome substitution F1 hybrids of Gossypium hirsutum L. x G. mustelinum Miers ex Watt. Journal of Cotton Science. 17:102-114.
Variation analysis for fiber quality traits among different positions in eight Upland cotton cultivars - (Proceedings)
Xu, Y., Jenkins, J.N., McCarty Jr, J.C., Wu, J. 2013. Variation analysis for fiber quality traits among different positions in eight Upland cotton cultivars. In: W. Song, editors. Proceedings Twenty-fourth Annual Kansas State University Conference on Applied Statistics in Agriculture, April 29-May 1, 2012, Manhattan, Kansas. p. 309-320.
De novo transcriptome assembly of the plant-parasitic nematode Rotylenchulus reniformis - (Abstract Only)
Showmaker, K.C., Ganji, S., Arick, M.A., Sanders, W.A., Magbunga, Z., Wubben, M., Peterson, D.G. 2013. De novo transcriptome assembly of the plant-parasitic nematode Rotylenchulus reniformis [abstract]. Midsouth Computational Biology and Bioinformatics Society. CD-ROM.
Two simple methods for the collection of individual life stages of reniform nematode, Rotylenchulus reniformis     Reprint Icon - (Peer Reviewed Journal)
Ganji, S., Wubben, M., Jenkins, J.N. 2013. Two simple methods for the collection of individual life stages of reniform nematode, Rotylenchulus reniformis. Journal of Nematology. 45:87-91.
Registration of RMBUP-C4, a random mated population with Gossypium hirsutum L. alleles, introgresssed into Upland cotton germplasm - (Peer Reviewed Journal)
Jenkins, J.N., McCarty Jr., J.C., Gutierrez, O.A., Hayes, R.W., Jones, D.C. 2013. Registration of RMBUP-C4, a random mated population with Gossypium hirsutum L. alleles, introgresssed into Upland cotton germplasm. Journal of Plant Registrations. 7:224-228.
Genetic analysis without replications: Model evaluation and application in spring wheat     Reprint Icon - (Peer Reviewed Journal)
Wu, J., Bondalapati, K., Glover, K., Berzonsky, W., Jenkins, J.N., McCarty, J.C. 2013. Genetic analysis without replications: model evaluation and application in spring wheat. Euphytica. 190:447-458.
Registration of three germplasm lines of cotton derived from Gossypium barbadense L. accession GB713 with resistance to the reniform nematode - (Peer Reviewed Journal)
McCarty Jr., J.C., Jenkins, J.N., Wubben, M., Gutierrez, O.A., Hayes, R.W., Callahan, F.E., Deng, D.D. 2013. Registration of three germplasm lines of cotton derived from Gossypium barbadense L. accession GB713 with resistance to the reniform nematode. Journal of Plant Registrations. 7:220-223.
Interspecific chromosomal effects on agronomic traits in Gossypium hirsutum by AD analysis using intermated G. barbadense chromosome substitution lines     Reprint Icon - (Peer Reviewed Journal)
Saha, S., Wu, J., Jenkins, J.N., McCarty Jr., J.C., Stelly, D.M. 2013. Interspecific chromosomal effects on agronomic traits in Gossypium hirsutum by AD analysis using intermated G. barbadense chromosome substitution lines. Theoretical and Applied Genetics. 126:109-117.
Detecting epistatic effects associated with cotton traits by a modified MDR approach     Reprint Icon - (Peer Reviewed Journal)
Wu, J., Jenkins, J.N., McCarty Jr., J.C., Glover, K. 2012. Detecting epistatic effects associated with cotton traits by a modified MDR approach. Euphytica. 187:289-301.
Over-expression of MIC3 reduces cotton susceptibility to root-knot nematode - (Abstract Only)
Wubben, M., Callahan, F.E., Jenkins, J.N., Velten, J.P. 2012. Over-expression of MIC3 reduces cotton susceptibility to root-knot nematode [abstract]. Society of Nematologists Conference. CD-ROM.
A cotton fiber associated cyclin-dependent kinase A gene: Characterization and chromosomal location     Reprint Icon - (Peer Reviewed Journal)
Gao, W., Saha, S., Ma, D., Guo, Y., Jenkins, J.N., Stelly, D.M. 2012. A cotton-fiber-associated cyclin-dependent kinase A gene: Characterization and chromosomal location. International Journal of Plant Genomics. 2012:613812.
MiRNAs from cotton roots infected with Meloidogyne incognita - (Abstract Only)
Shapulatov, U.M., Abdusalom, M., Saha, S., Wubben, M., Jenkins, J.N., Buriev, Z.T., Ulloa, M., Scheffler, B.E., Abdurakhmonov, I.Y. 2012. MiRNAs from cotton roots infected with Meloidogyne incognita [abstract]. National Cotton Council Beltwide Cotton Conference. p. 730.
Molecular confirmation of Gossypium hirsutum chromosome substitution lines and interspecific F1 hypoaneuploids - (Abstract Only)
Saha, S., Stelly, D.M., Raska, D., Hulse, A., Gutierrez, O.A., Makamov, A., Gotmare, V., Wang, F., Manchali, S., Jenkins, J.N., Abdurakhmonov, I.Y. 2012. Molecular confirmation of Gossypium hirsutum chromosome substitution lines and interspecific F1 hypoaneuploids [abstract]. National Cotton Council Beltwide Cotton Conference. p. 756-757.
Association of SSR markers with important fiber traits in Upland cotton - (Abstract Only)
Saha, S., Emgamberdiev, S.S., Wu, J., Jenkins, J.N., McCarty Jr, J.C., Deng, D.D., Abdurakhmonov, I. 2012. Association of SSR markers with important fiber traits in Upland cotton [abstract]. National Cotton Council Beltwide Cotton Conference. p. 754.
The Rotylenchulus reniformis genome: sequencing, assembly, and annotation - (Abstract Only)
Sanders, W.S., Showmaker, K., Bartlett, B., Wang, H., Ganji, S., Wubben, M., Mccarthy, F., Magbanua, Z., Peterson, D.G. 2012. The Rotylenchulus reniformis genome: sequencing, assembly, and annotation [abstract]. Plant and Animal Genome Conference. CD-ROM.
Sequencing and analysis of the Rotylenchulus reniformis transcriptome - (Abstract Only)
Showmaker, K., Sanders, W.S., Barlett, B., Wang, H., Ganji, S., Wubben, M., Mccarthy, F., Magbanua, Z., Peterson, D.G. 2012. Sequencing and analysis of the Rotylenchulus reniformis transcriptome [abstract]. Plant and Animal Genome Conference. CD-ROM.
Genetic effects of nine Gossypium barbadense L. chromosome substitution lines in topcrosses with five elite Upland cotton G. hirsutum L. cultivars     Reprint Icon - (Peer Reviewed Journal)
Jenkins, J.N., McCarty Jr, J.C., Wu, J., Hayes, R.W., Stelly, D. 2012. Genetic effects of nine Gossypium barbadense L. chromosome substitution lines in top crosses with five elite Upland cotton G. hirsutum L. cultivars. Euphytica. 187:161-173.
Identification and characterization of C-type lectin genes from the reniform nematode - (Abstract Only)
Ganji, S., Wubben, M., Jenkins, J.N. 2012. Identification and characterization of C-type lectin genes from the reniform nematode. Proceedings of 2012 Beltwide Cotton Conferences. CD-ROM.
Mic3 over-Expression Reduces Cotton Susceptibility to Root-Knot Nematode - (Abstract Only)
Wubben, M., Callahan, F.E., Jenkins, J.N., Velten, J.P. 2012. MIC3 over-expression reduces cotton susceptibility to root-knot nematode. Proceedings of 2012 Beltwide Cotton Conferences. CD-ROM.
Interspecific chromosome substitution lines from Gossypium barbadense and G. tomentosum in Upland cotton improvement - (Abstract Only)
Saha, S., Stelly, D.M., Raska, D., Wu, J., Jenkins, J.N., McCarty Jr., J.C., Abdusalom, M., Gotmare, V., Abdurakhmonov, I.Y., Campbell, B.T. 2011. Interspecific chromosome substitution lines from Gossypium barbadense and G. tomentosum in Upland cotton improvement. Proceedings World Cotton Research Conference-5. p. 129.
Registration of three germplasm lines of cotton derived from Gossypium hirsutum L. accession T2468 with moderate resistance to the reniform nematode     Reprint Icon - (Germplasm Registration)
McCarty, Jr., J.C., Jenkins, J.N., Wubben, M., Hayes, R.W., Lafoe, M. 2012. Registration of three germplasm lines of cotton derived from Gossypium hirsutum L. accession T2468 with moderate resistance to the reniform nematode. Journal of Plant Registrations. 6:85-87.
Genetic diversity in Gossypium genus - (Book / Chapter)
Abdurakhmonov, I.K., Buriev, Z.T., Shermatov, S.E., Abdullaev, A.A., Urmonov, K., Kushanov, F., Egamberdiev, S.S., Shapulatov, U., Abdukarimov, A., Saha, S., Jenkins, J.N., Kohel, R.J., Yu, J., Pepper, A.E., Kumpatala, S., Ulloa, M. 2012. Genetic diversity in Gossypium genus. In: Caliskan, M., editor. Genetic Diversity in Plants. InTech. p. 313-338.
Chromosome substituution lines: Concept, development and utilization in the genetic improvement of upland cotton - (Book / Chapter)
Saha, S., Stelly, D.M., Raska, D.A., Wu, J., Jenkins, J.N., McCarty, Jr., J.C., Makamov, A., Gotmare, V., Abudurakhmonov, I., Campbell, B.T. 2012. Chromosome substitution lines: Concept, development and utilization in the genetic improvement of upland cotton. In: Abdurakhmoov, I.Y., editor. Plant Breeding. InTech. p. 107-128.
Role of biotechnology in sustainable development of cotton - (Proceedings)
Saha, S. 2011. Role of biotechnology in sustainable development of cotton. International Cotton Advisory Committee Recorder. XXIX:4-10.
Molecular evolution of the clustered MMIC-3 multigene family of Gossypium species     Reprint Icon - (Peer Reviewed Journal)
Buriev, Z.T., Saha, S., Shermatov, S.E., Jenkins, J.N., Abdukarimov, A., Stelly, D.M., Abdurakhmonov, I.Y. 2011. Molecular evolution of the clustered MIC-3 multigene family of Gossypium species. Theoretical and Applied Genetics. 123:1359-1373.
SSR markers for marker assisted selection of root-knot nematode (Meloidogyne incognita) resistant plants in cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Jenkins, J.N., McCarty Jr., J.C., Wubben, M.J., Hayes, R.W., Gutierrez, O.A., Callahan, F.E., Deng, D.D. 2012. SSR markers for marker assisted selection of root-knot nematode (Meloidogyne incognita) resistant plants in cotton (Gossypium hirsutum L.). Euphytica. 183:49-54.
Comparisons of Four Approximation Algorithms for Large-Scale Linkage Map Construction - (Peer Reviewed Journal)
Wu, J., Jenkins, J.N., McCarty Jr., J.C., Lou, X. 2011. Comparisons of four approximation algorithms for large-scale linkage map construction. Theoretical and Applied Genetics. 123:649-655.
Enrichment of chromosome 17 specific molecular markers of Pima cotton substituted in Upland cotton lines - (Abstract Only)
Aziz, A.N., Kommireddy, V.L., Jenkins, J.N., McCarty Jr, J.C., Stelly, D.M., Saha, S. 2011. Enrichment of chromosome 17 specific molecular markers of Pima cotton substituted in Upland cotton lines. Proceedings 1890 Association of Research Directors, Biennial Research Symposium, April 9-11, 2011, Atlanta, GA. CD ROM.
Identification and Molecular Characterization of a Glycosyl Hydrolase Family 5 B-1,4-endoglucanase (Rr-eng-1) from the Reniform Nematode, Rotylenchulus reniformis     Reprint Icon - (Peer Reviewed Journal)
Wubben, M.J, Ganji, S., Callahan, F.E. 2010. Identification and molecular characterization of a glycosyl hydrolase family 5 B-1,4-endoglucanase (Rr-eng-1) from the reniform nematode, Rotylenchulus reniformis. Journal of Nematology. 42:342-351.
Delineation of Interspecific Epistasis on Fiber Quality Traits in Gossypium hirsutum by ADAA Analysis of Intermated G. barbadense Chromosome Substitution Lines - (Peer Reviewed Journal)
Saha, S., Wu, J., Jenkins, J.N., McCarty, J.C., Hayes, R.W., Stelly, D.M. 2011. Delineation of interspecific epistasis on fiber quality traits in Gossypium hirsutum by ADAA analysis of intermated G. barbadense chromosome substitution lines. Theoretical and Applied Genetics. 122:1351-1361.
A generalized approach and computer tool for quantitative genetics study - (Proceedings)
Wu, J., Jenkins, J.N., McCarty Jr., J.C. 2011. A generalized approach and computer tool for quantitative genetics study. Proceedings Applied Statistics in Agriculture, April 25-27, 2010, Manhattan, KS. p.85-106.
Genetic effects of individual chromosomes in cotton cultivars detected by using chromosome substitution lines as genetic probes - (Peer Reviewed Journal)
Wu, J., Jenkins, J.N., McCarty Jr., J.C., Saha, S. 2010. Genetic effects of individual chromosomes in cotton cultivars detected by using chromosome substitution lines as genetic probes. Genetica. 138:1171-1179.
Molecular Evolution of Clustered MIC-3 (Meloidogyne Induced Cotton -3) Multigene Family of Gossypium Species - (Abstract Only)
(20-Sep-10)
Interspecific Chromosome Substitution Lines as Genetic Resources for Improvement, Trait Analyses and Genomic Inference - (Abstract Only)
(20-Sep-10)
Identification of QTL Regions and SSR Markers Associated with Resistance to Reniform Nematode in Gossypium barbadense L. accession GB713 - (Peer Reviewed Journal)
Gutierrez, O., Robinson, A.F., Jenkins, J.N., McCarty Jr., J.C., Wubben, M., Callahan, F.E., Nichols, R.L. 2011. Identification of QTL regions and SSR markers associated with resistance to reniform nematode in Gossypium barbadense L. accession GB713. Theoretical and Applied Genetics. 122:271-280.
Qtl Analysis of Resistance to Reniform Nematode in Gossypium Barbadense L. Accession Gb713 - (Abstract Only)
Gutierrez, O.A., Robinson, A.F., Jenkins, J.N., McCarty Jr, J.C., Wubben, M., Callahan, F.E. 2010. QTL analysis of resistance to reniform nematode in Gossypium barbadense L. accession GB713. Agronomy Abstracts, American Society of Agronomy, October 31-November 3, 2010, Longbeach, CA. CD ROM.
SSR markers closely associated with genes for resistance to root-knot nematode on chromosomes 11 and 14 of upland cotton - (Peer Reviewed Journal)
Gutierrez, O.A., Jenkins, J.N., McCarty Jr., J.C., Wubben, M., Hayes, R.W., Callahan, F.E. 2010. SSR markers closely associated with genes for resistance to root-knot nematode on chromosomes 11 and 14 of upland cotton. Theoretical and Applied Genetics. 121:1323-1337.
Isolation and characterization of a GHF5 b-1,4-endoglucanase from the reniform nematode (Rotylenchulus reniformis) - (Abstract Only)
Wubben, M., Callahan, F.E. 2010. Isolation and characterization of a GHF5 b-1,4-endoglucanase from the reniform nematode (Rotylenchulus reniformis). Proceedings of the 2010 Society of Nematology Conference. p. 118-119.
Atypical Ligon Lintless-2 Phenotype in Cotton - (Peer Reviewed Journal)
An, C., Jenkins, J.N., McCarty Jr., J.C., Saha, S. 2010. Atypical Ligon Lintless-2 Phenotype in Cotton. Journal of Cotton Science. 14:13-16.
Characterization and Promoter Analysis of a Cotton Ring-Type Ubiquitin Ligase (E3) Gene - (Peer Reviewed Journal)
Ho, M., Saha, S., Jenkins, J.N., Ma, D. 2010. Characterization and promoter analysis of a cotton ring-type ubiquitin ligase (E3) gene. Molecular Biotechnology. 46:140-148.
Transcript Analysis of Parasitic Females of the Sedentary Semi-Endoparasitic Nematode Rotylenchulus reniformis - (Peer Reviewed Journal)
Wubben, M., Callahan, F.E., Scheffler, B.E. 2010. Transcript Analysis of Parasitic Females of the Sedentary Semi-Endoparasitic Nematode Rotylenchulus reniformis. Molecular and Biochemical Parasitology. 172:31-40.
Genetic Dissection of Chromosome Substitution Lines of Cotton to Discover Novel Gossypium barbadense L. Alleles for Improvement of Agronomic Traits - (Peer Reviewed Journal)
Saha, S., Wu, J., Jenkins, J.N., McCarty Jr., J.C., Hayes, R.W., Stelly, D. 2010. Genetic Dissection of Chromosome Substitution Lines of Cotton to Discover Novel Gossypium barbadense L. Alleles for Improvement of Agronomic Traits. Journal of Theoretical and Applied Genetics. 120:1193-1205.
Cotton Chromosome Substitution Lines Crossed with Cultivars: Genetic Model Evaluation and Seed Trait Analyses - (Peer Reviewed Journal)
Wu, J., McCarty Jr., J.C., Jenkins, J.N. 2010. Cotton Chromosome Substitution Lines Crossed with Cultivars: Genetic Model Evaluation and Seed Trait Analyses. Theoretical and Applied Genetics. 120:1473-1483.
Transcript Analysis of Sedentary Parastic Female Reniform Nematodes (Rotylenchulus reniformis) Identifies Candidate Parasitism Genes and Targets for RNA-Interference - (Abstract Only)
Wubben, M., Callahan, F.E., Scheffler, B.E. 2010. Transcript analysis of sedentary parastic female reniform nematodes (Rotylenchulus reniformis) identifies candidate parasitism genes and targets for RNA-interference. Proceedings Plant and Animal Genome Conference. CD-ROM.
Clustering, haplotype diversity and locations of MIC-3: a unique root-specific defense-related gene family in upland cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Buriev, Z.T., Saha, S., Abdurakhmonov, I.Y., Jenkins, J.N., Abdukarimov, A., Scheffler, B.E., Stelly, D.M. 2010. Clustering, haplotype diversity and locations of MIC-3: a unique root-specific defense-related gene family in upland cotton (Gossypium hirsutum L.). Theoretical and Applied Genetics. 120:587-606.
Breeding potential of introgressions into cotton: genetic effects and heterosis - (Peer Reviewed Journal)
Wu, J., McCarty Jr, J.C., Jenkins, J.N., Meredith Jr, W.R. 2010. Breeding potential of introgressions into cotton: genetic effects and heterosis. Plant Breeding. 129:526-532.
Phenotypic and molecular evaluation of cotton hairy roots as a model system for studying nematode resistance - (Peer Reviewed Journal)
Wubben, M., Callahan, F.E., Triplett, B.A., Jenkins, J.N. 2009. Phenotypic and Molecular Evaluation of Cotton Hairy Roots as a Model System for Studying Nematode Resistance. Plant Cell Reports. 28:1399-1409.
Genetic variance components and genetic effects among eleven diverse upland cotton lines and their F2 hybrids - (Peer Reviewed Journal)
Jenkins, J.N., McCarty Jr., J.C., Wu, J., Gutierrez, O. 2009. Genetic variance components and genetic effects among eleven diverse upland cotton lines and their F2 hybrids. Euphytica. 167:397-408.
Seed trait evaluation of Gossypium barbadense L. chromosomes/arms in a G. hirsutum L. background - (Peer Reviewed Journal)
Wu, J., Jenkins, J.N., McCarty Jr., J.C., Thaxton, P. 2009. Seed trait evaluation of Gossypium barbadense L. chromosomes/arms in a G. hirsutum L. background. Euphytica. 167:371-380.
Global view of cotton germplasm resources - (Abstract Only)
Saha, S., Campbell, B.T., Jenkins, J.N., Park, W., Percy, R.G., Frelichowski, J.E., Mayee, C., Gotmare, V., Dessauw, D., Giband, M., Du, Y., Jia, Y., Constable, G., Dillon, S., Abdurakhmonov, A., Abdukarimov, A.A., Rizaeva, S., Adullaev, A.A., Barroso, P.A., Padua, J.G., Hoffmann, L.V. 2009. Global view of cotton germplasm resources. National Cotton Council Beltwide Cotton Conference. p. 658.
Testing variance components by two jackknife methods - (Proceedings)
Wu, J., Jenkins, J.N., McCarty Jr., J.C. 2009. Testing variance components by two jackknife methods. In: Applied Statistics In Agriculture Conference Proceedings, April 27-29, 2008, Manhattan, KS. pp. 1-17.
Transcript analysis of sedentary female reniform nematodes identifies potential targets ofr RNAi-mediated resistance - (Abstract Only)
Wubben, M., Callahan, F.E., Scheffler, B.E., Jenkins, J.N. 2009. Transcript analysis of sedentary female reniform nematodes identifies potential targets ofr RNAi-mediated resistance [abstract]. National Cotton Council Beltwide Cotton Conference. p. 179.
Chromosomal assignment of ALFP markers in upland cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Myers, G.M., Jiang, B., Akash, M.W., Badigannavar, A., Saha, S. 2009. Chromosomal assignment of ALFP markers in upland cotton (Gossypium hirsutum L.). Euphytica. 165:391-399.
Constructing molecular linkage maps of chromosome 14sh and 22 sh and QTL mapping for major traits by use of substitution lines of Gossypium hirsutum L. - (Abstract Only)
Luan, M., Guo, X., Zhang, Y., Yao, J., Saha, S., Jenkins, J.N. 2008. Constructing molecular linkage map and chromosome 14sh and 33sh and QTL mapping for major traits by use of substitution lines of Gossypium hirsutum L. Cotton Science. 20(S):85.
Last Modified: 12/20/2014
Footer Content Back to Top of Page