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United States Department of Agriculture

Agricultural Research Service

Research Project: MOLECULAR AND GENETIC MECHANISMS OF FUNGAL DISEASE RESISTANCE IN GRAIN CROPS

Location: Crop Production and Pest Control Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence. G3-Genes, Genomes, Genetics. - (Peer Reviewed Journal)
Manning, V.A., Pandelova, I., Dhillon, B., Wilhelm, L.J., Goodwin, S.B., Berlin, A., Figueroa, M., Freitag, M., Hane, J.K., Henrissat, B. 2013. Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence. G3-Genes, Genomes, Genetics. 3:41-63.
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi - (Peer Reviewed Journal)
Ohm, R., Feau, N., Henrissat, B., Schoch, C.L., Horwitz, B.A., Barry, K.W., Condon, B.J., Copeland, A.C., Dhillon, B., Glaser, F., Goodwin, S.B. et al. 2012. Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. PLoS Pathogens. 8(12): e1003037. DOI:10.1371/journal.ppat.1003037.
Molecular mapping re-locates the Stb2 gene for resistance to Septoria tritici blotch derived from cultivar Veranopolis on wheat chromosome 1BS - (Peer Reviewed Journal)
Liu, Y., Zhang, L., Thompson, I.A., Goodwin, S.B., Ohm, H. 2012. Molecular mapping re-locates the Stb2 gene for resistance to Septoria tritici blotch derived from cultivar Veranopolis on wheat chromosome 1BS. Euphytica. 190:145-156. DOI: 10.1007/s10681-012-0796-8.
A Perl script for targeted local genome assembly - (Abstract Only)
Crane, C.F., Nemacheck, J.A., Subramanyam, S., Williams, C.E. 2012. A Perl script for targeted local genome assembly. Plant and Animal Genome Conference Proceedings. PO981.
Resistance in wheat to Septoria diseases caused by Mycosphaerella graminicola (Septoria tritici) and Phaeosphaeria (Stagonospora) nodorum - (Book / Chapter)
Goodwin, S.B. 2012. Resistance in wheat to Septoria diseases caused by Mycosphaerella graminicola (Septoria tritici) and Phaeosphaeria (Stagonospora) nodorum. In: Sharma, I, Editor. Disease resistance in wheat, 2012. Wallingford, UK: CABI. p. 151-159.
Genetic differentiation at microsatellite loci among populations of Mycosphaerella Graminicola from California, Indiana, Kansas and North Dakota - (Peer Reviewed Journal)
Gurung, S., Goodwin, S.B., Kabbage, M., Bockus, W.W., Adhikari, T.B. 2011. Genetic differentiation at microsatellite loci among populations of Mycosphaerella Graminicola from California, Indiana, Kansas and North Dakota. Phytopathology. 101:1251-1259.
Mesosynteny; A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi - (Peer Reviewed Journal)
Hane, J.K., Rouxel, T., Howlett, B., Kema, G.J., Goodwin, S.B., Oliver, R.P. 2011. Mesosynteny; A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi. Genome Biology. 12:R45.
Mycosphaerella comparative genomics reveals chromosome dynamics, genome evolution and stealth pathogenesis - (Abstract Only)
(01-May-11)
Fueling the future with fungal genomics - (Peer Reviewed Journal)
Grigoriev, I.V., Cullen, D., Hibbett, D., Goodwin, S.B., Jeffries, T.W., Kuske, C., Magnuson, J., Spatafora, J. 2011. Fueling the future with fungal genomics. Mycological Society Of Japan. DOI: 10.1080/21501203.2011.584577.
Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis - (Peer Reviewed Journal)
Goodwin, S.B., M'Barek, S., Dhillon, B., Wittenberg, A.J., Crane, C.F., Van Der Lee, T.J., Grimwood, J., Aerts, A., Antoniw, J., Bailey, A., Bluhm, B., Bowler, J., Bristow, J., Canto-Canche, B., Churchill, A., Conde-Ferraez, L., Cools, H., Coutinho, P.M., Csukai, M., Dehal, P., De Wit, P., Donzelli, B., Foster, A.J., Hammond-Kosack, K., Hane, J., Henrissat, B., Killian, A., Koopmann, E., Kourmpetis, Y., Kuzniar, A., Lindquist, E., Lombard, V., Maliepaard, C., Martins, N., Mahrabi, R., Oliver, R., Ponomarenko, A., Rudd, J., Salamov, A., Schmutz, J., Schouten, H.J., Shapiro, H., Stergiopoulos, I., Torriani, S.F., Tu, H., De Vries, R.P., Wiebenga, A., Zwiers, L., Grigoriev, I.V., Kema, G.J. 2011. Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis. PLoS Genetics. Available at: http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002070.
Identification and annotation of repetitive sequences in fungal genomes - (Book / Chapter)
Dhillon, B., Goodwin, S.B. 2011. Identification and annotation of repetitive sequences in fungal genomes. Methods in Molecular Biology. In: Xu, J.R., Bluhm, B.H., editors. Methods in Molecular Biology: Fungal Genomics. New York, NY: Humana Press. p. 33-50.
Regulation of pathogenesis by light in Cercospora zeae-maydis: An updated perspective - (Peer Reviewed Journal)
(25-Feb-11)
Effector diversification within compartments of the Leptosphaeria maculans genome affected by repeat induced point mutations - (Peer Reviewed Journal)
Rouxel, T., Grandaubert, J., Hane, J.K., Hoede, C., Van De Wouw, A. ., Couloux, A., Dominguez, V., Anthouard, V., Bally, P., Bourras, S., Cozijnsen, A.J., Ciuffetti, L.M., Degrave, A., Dilmaghani, A., Duret, L., Fudal, I., Goodwin, S.B., Gout, L., Glaser, N., Linglin, J., Kema, G.G., Lapalu, N., Lawrence, C.B., May, K., Meyer, M., Ollivier, B., Poulain, J., Simon, A., Stachowiak, A., Turgeon, G.B., Tyler, B.M., Vincent, D., Weissenbach, J., Amselem, J., Balesdent, M., Howlett, B., Oliver, R.P., Quesneville, H., Wincker, P. 2011. Effector diversification within compartments of the Leptosphaeria maculans genome affected by repeat induced point mutations. Nature Communications. 2:202.
Gene encoding a C-type cyclin in Mycosphaerella graminicola is involved in aerial mycelium formation, filamentous growth, hyphal swelling, melanin biosynthesis, stress response, and pathogenicity - (Peer Reviewed Journal)
Choi, Y., Goodwin, S.B. 2011. Gene encoding a C-type cyclin in Mycosphaerella graminicola is involved in aerial mycelium formation, filamentous growth, hyphal swelling, melanin biosynthesis, stress response, and pathogenicity. Molecular Plant-Microbe Interactions. 24:469-477.
Septoria Tritici Blotch (STB) - (Research Notes)
Ponomarenko, A., Goodwin, S.B., Kema, G. 2011. Septoria Tritici Blotch (STB). The Plant Health Instructor. DOI:10.1094/PHI-I-2011-0407-01.
Mve1 Encoding the Velvet Gene Product Homolog in Mycosphaerella Graminicola Is Associated with Aerial Mycelium Formation, Melanin Biosynthesis, Hyphal Swelling, and Light Signaling - (Peer Reviewed Journal)
Choi, Y., Goodwin, S.B. 2011. MVE1 Encoding the velvet gene product homolog in Mycosphaerella graminicola is associated with aerial mycelium formation, melanin biosynthesis, hyphal swelling, and light signaling. Applied and Environmental Microbiology. 77:942-953.
Mature watermelon vine decline: evidence for the biological nature of a soil-borne problem     Reprint Icon - (Peer Reviewed Journal)
Westphal, A., Xing, L., Goodwin, S.B. 2011. Mature watermelon vine decline: evidence for the biological nature of a soil-borne problem. Plant Pathology. 30:111-117.
Accidental Amplification and Inactivation of a Methyltransferase Gene Eliminates Cytosine Methylation in Mycosphaerella Graminicola - (Peer Reviewed Journal)
Dhillon, B., Cavaletto, J.R., Wood, K.V., Goodwin, S.B. 2010. Accidental Amplification and Inactivation of a Methyltransferase Gene Eliminates Cytosine Methylation in Mycosphaerella Graminicola. Genetics. 186:67-77.
Variable Number of Tandem Repeat Markers in the Genome Sequence of Mycosphaerella Fijiensis, the Causal Agent of Black Leaf Streak Disease of Banana (Musa spp.) - (Peer Reviewed Journal)
Garcia, S.L., Van Der Lee, T.J., Ferreira, C.F., Hekkert, B., Carlier, J., Goodwin, S.B., Guzman, M., Souza, M.T., Kema, G.J. 2010. Variable Number of Tandem Repeat Markers in the Genome Sequence of Mycosphaerella Fijiensis, the Causal Agent of Black Leaf Streak Disease of Banana (Musa spp.). Genetics and Molecular Research. 9:2207-2212.
Genetic Structure of Mycosphaerella Graminicola Populations in the Major Wheat-Growing Regions of the United States - (Abstract Only)
Gurung, S., Goodwin, S.B., Kabbage, M., Bockus, W., Adhikari, T.B. 2010. Genetic Structure of Mycosphaerella Graminicola Populations in the Major Wheat-Growing Regions of the United States. Phytopathology.
The Mycosphaerella Genomics Consortium: Understanding Pathogenicity and Adaptation - (Abstract Only)
Goodwin, S.B., Stergiopoulos, De Wit P.J.G.M., Kema, G. 2010. The Mycosphaerella Genomics Consortium: Understanding Pathogenicity and Adaptation. Canadian Phytopathological Society Meeting.
Analysis of Mycosphaerella Graminicola from California, Indiana, Kansas and North Dakota with Mating Type and SSR Markers - (Abstract Only)
Gurung, S., Goodwin, S.B., Kabbage, M., Bockus, W., Adhikari, T.B. 2010. Analysis of Mycosphaerella Graminicola from California, Indiana, Kansas and North Dakota with Mating Type and SSR Markers. Phytopathology. 100:S45.
A Circadian Rhythm Regulating Hyphal Melanization in Cercospora Kikuchii - (Peer Reviewed Journal)
(23-Apr-10)
Gene Encoding a C-Type Cyclin in Mycosphaerella Graminicola is Involved in Mycelium Formation, Melanin Biosynthesis, Stress Response, and Pathogenicity - (Abstract Only)
Choi, Y., Goodwin, S.B. 2010. Gene Encoding a C-Type Cyclin in Mycosphaerella Graminicola is Involved in Mycelium Formation, Melanin Biosynthesis, Stress Response, and Pathogenicity. Phytopathology.
Nutrient Acquisition and Generation of Reactive Oxygen Species Via CREA, AREA, and NOXa are Important in Pathogenicity in Mycosphaerella Graminicola - (Abstract Only)
Choi, Y., Goodwin, S.B. 2010. Nutrient Acquisition and Generation of Reactive Oxygen Species Via CREA, AREA, and NOXa are Important in Pathogenicity in Mycosphaerella Graminicola. Phytopathology.
Development of Isogenic Lines for Resistance to Septoria Tritici Blotch in Wheat - (Abstract Only)
Goodwin, S.B., Thompson, I.A. 2010. Development of Isogenic Lines for Resistance to Septoria Tritici Blotch in Wheat . International Wheat Conference Proceedings.
The dodge of blotch: Saving sex in Mycosphaerella graminicola - (Abstract Only)
Kema, G., Ware, S., Van Der Lee, T., Wittenberg, A., Diaz, C., Goodwin, S.B., De Waard, M., M"Barek, S. 2010. The dodge of blotch: Saving sex in Mycosphaerella graminicola. Meeting Proceedings.
The Draft Genome Sequence of Mycosphaerella fijiensis, the Black Sigatoka Pathogen of Banana - (Abstract Only)
Kema, G., Goodwin, S.B., Van Der Lee, T., Dhillon, B., Arango, R., Crane, C.F., Diaz, C., Souza, M., Carlier, J., Schmutz, J., Grigoriew, I. 2010. The Draft Genome Sequence of Mycosphaerella fijiensis, the Black Sigatoka Pathogen of Banana. Meeting Proceedings.
Gearing Up for Comparative Genomics: Analyses of the Fungal Class Dothideomycetes. Dothideomycetes Comparative Genomics Session: 25th Fungal Genetics Conference, Pacific Grove, CA, USA, March 2009 - (Peer Reviewed Journal)
Goodwin, S.B., Kema, G.J. 2009. Gearing Up for Comparative Genomics: Analyses of the Fungal Class Dothideomycetes. New Phytologist. 183:250-253.
Genome Plasticity in the Genus Mycosphaerella - (Abstract Only)
Goodwin, S.B., Kema, G.J. 2009. Genome Plasticity in the Genus Mycosphaerella. Phytopathology 99:S166
Meiosis Drives Extraordinary Genome Plasticity in the Haploid Fungal Plant Pathogen Mycosphaerella Graminicola     Reprint Icon - (Peer Reviewed Journal)
Wittenberg, A.J., Van Der Lee, T.A., M'Barek, S.B., Ware, S.B., Goodwin, S.B., Kilian, A., Visser, R.F., Kema, G.J., Schouten, H.J. 2009. Meiosis Drives Extraordinary Genome Plasticity in the Haploid Fungal Plant Pathogen Mycosphaerella Graminicola. PLoS One. Available: PLoSONE4(6):e5863.doi:10.1371/journal/pone.005863
Development of Simple Sequence Repeat Markers from Expressed Sequence Tags of the Maize Gray Leaf Spot Pathogen, Cercospora Zea-Maydis - (Peer Reviewed Journal)
Dunkle, L.D., Crane, C.F., Goodwin, S.B. 2009. Development of Simple Sequence Repeat Markers from Expressed Sequence Tags of the Maize Gray Leaf Spot Pathogen, Cercospora Zea-Maydis. Molecular Ecology Resources. 9:1375-1379.
Absence of Cytosine Methylation in Mycosphaerella Graminicola Correlates with Repeat Induced Point Mutation Signature in its Dim-2 Homologue - (Abstract Only)
Dhillon, B., Cavaletto, J.R., Wood, K.V., Goodwin, S.B. 2009. Absence of Cytosine Methylation in Mycosphaerella Graminicola Correlates with Repeat Induced Point Mutation Signature in its Dim-2 Homologue. Fungal Genetics Conference Proceedings. Abstract No. 43.
Outstanding: the Dispensable Chromosomes of Mycosphaerella Graminicola - (Abstract Only)
M'Barek, S.B., Van Der Lee, T.A., Wittenberg, A.H., Maliepaard, C., Crane, C.F., Dhillon, B., Goodwin, S.B., Schouten, H.J., Kema, G.H. 2009. Outstanding: the Dispensable Chromosomes of Mycosphaerella Graminicola. Fungal Genetics Conference Proceedings. 56:102
A Genetic Linkage Map of Mycosphaerella Fijiensis, using SSR and DArT Markers - (Abstract Only)
Ferreira, C.F., Van Der Lee, T.J., Zapater, M.F., Carlier, J., Goodwin, S.B., Souza, M.T., Kema, G.J. 2009. A Genetic Linkage Map of Mycosphaerella Fijiensis, using SSR and DArT Markers. Fungal Genetics Conference Proceedings. Abstract No. 513.
Analyses of Expressed Sequence Tags from the Maize Foliar Pathogen Cercospora Zeae-Maydis Identifing Novel Genes expressed during Vegetative, Infectious, & Reproductive Growth     Reprint Icon - (Peer Reviewed Journal)
Bluhm, B., Dhillon, B., Lindquist, E., Crane, C.F., Kema, G., Goodwin, S.B., Dunkle, L.D. 2008. Analyses of Expressed Sequence Tags from the Maize Foliar Pathogen Cercospora Zeae-maydis Identify Novel Genes Expressed during Vegetative, Infectious, & Reproductive Growth. Biomed Central (BMC) Genomics. 9:523.
Use of PCR analysis for identification of species and genus of Septoria on grain crops - (Abstract Only)
Mustafina, M.A., Polyakova, T.M., Goodwin, S.B. 2008. Use of PCR analysis for identification of species and genus of Septoria on grain crops. Symposium Proceedings. P. 248-249.
Epidemiological Peculiarity of Septoria Species on Winter Wheat in the Central Region of the Russian Federation - (Abstract Only)
Paholkova, E.V., Akimova, E.A., Sanin, S.S., Goodwin, S.B. 2008. Epidemiological Peculiarity of Septoria Species on Winter Wheat in the Central Region of the Russian Federation. Symposium Proceedings.
Development of a genetic linkage map of Mycosphaerella fijiensis, the causal agent of black leaf streak disease in bananas (Musa spp.) using SSR and DArT markers - (Abstract Only)
Ferreira, C.F., Van Der Lee, T., Zapater, M.F., Carlier, J., Goodwin, S.B., Souza, Jr., M.T., Kema, G. 2008. Development of a genetic linkage map of Mycosphaerella fijiensis, the causal agent of black leaf streak disease in bananas (Musa spp.) using SSR and DArT markers. Symposium Proceedings. Available: http://www.path.ethz.ch/news/conferences/Mycosphaerella_Ascona_2007/008_abs.pdf
Development of VNTR Markers to Assess Genetic Diversity of Mycosphaerella Fijiensis, the Causal Agent of Black Leaf Streak Disease in Bananas (Musa spp.) - (Abstract Only)
Fereira, C.F., Van Der Lee, T., Quiros, Q., Te Lintel, H.B., Zapater, M.F., Carlier, J., Goodwin, S.B., Guzman, M., Souza, Jr., M.T., Kema, G. 2008. Development of VNTR Markers to Assess Genetic Diversity of Mycosphaerella Fijiensis, the Causal Agent of Black Leaf Streak Disease in Bananas (Musa spp.). Symposium Proceedings. Available: http://www.path.ethz.ch/news/conferences/Mycosphaerella_Ascona_2007/00007_posterabstract.pdf
Validation of a new map location for the Stb3 gene for resistance to septoria tritici blotch in wheat - (Abstract Only)
Goodwin, S.B., Cavaletto, J.R., Lowe, I., Thompson, I.A., Xu, S.X., Adhikari, T.B., Dubcovsky, J. 2008. Validation of a new map location for the Stb3 gene for resistance to septoria tritici blotch in wheat. International Septoria Stagonospora Workshop. Available at: http://www.path.ethz.ch/news/conferences/Mycosphaerella_Ascona_2007/00022_posterabstract.pds
Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola - (Abstract Only)
Torriani, S.F., Goodwin, S.B., Kema, G.J., Pangilinan, J.L., Mcdonald, B.A. 2008. Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola. International Septoria Stagonospora Workshop. Available at: http://www.path.ethz.ch/news/conferences/Mycosphaerella_Ascona_2007/00021_posterabstract.pdf
Phl1 of Cercospora Zeae-Maydis Encodes a Member of the Photolyase/cryptochrome Family Involved in Uv Protection and Fungal Development - (Peer Reviewed Journal)
Bluhm, B., Dunkle, L.D. 2008. Phl1 of Cercospora zeae-maydis encodes a member of the photolyase/cryptochrome family involved in UV protection and fungal development. Fungal Genetics and Biology. 45:1364-1372.
Population genetic structure of Phaeosphaeria nodorum in the central United States - (Abstract Only)
Adhikari, T.B., Ali, S., Burlakoti, R.R., Singh, P.K., Mergoum, M., Goodwin, S.B. 2008. Population genetic structure of Phaeosphaeria nodorum in the central United States. Septoria International Workshop Proceedings. Available at: http://www.path.ethz.ch/news/conferences/Mycosphaerella_Ascona_2007/00024_posterabstract.pdf
Mature watermelon vine decline is associated with Rhizopycnis vagum - (Abstract Only)
Westphal, A., Xing, L., Goodwin, S.B., Egel, D.S. 2008. Mature watermelon vine decline is associated with Rhizopycnis vagum. Phytopathology. 98: S170
Regulation of pathogenesis by light in Cercospora zeae-maydis: Identification of a photoreceptor required for infection of maize - (Abstract Only)
Bluhm, B.H., Dunkle, L.D. 2008. Regulation of pathogenesis by light in Cercospora zeae-maydis: Identification of a photoreceptor for infection of maize. Phytopathology. 98(6):S23.
Involvement of ZFR1 of Fusarium verticilliodes in kernel colonization and the regulation of FST1, a putative sugar transporter gene required for fumonisin biosynthesis on maize kernels - (Peer Reviewed Journal)
Bluhm, B., Kim, H., Butchko, R.A., Woloshuk, C.P. 2008. Involvement of ZFR1 of Fusarium verticilliodes in kernel colonization and the regulation of FST1, a putative sugar transporter gene required for fumonisin biosynthesis on maize kernels. Molecular Plant Pathology. 9(2):203-211.
Comparative repeat analysis of two fungi from the genus Mycosphaerella - (Abstract Only)
Dhillon, B., Goodwin, S.B. 2008. Comparative repeat analysis of two fungi from the genus Mycosphaerella. Plant and Animal Genome Conference. Available: http://www.intlpag.org/16/abstracts/pag16_p05a_220.html.
The finished genomic sequence of the Septoria tritici blotch pathogen Mycosphaerella graminicola - (Abstract Only)
Goodwin, S.B., Ponomarenko, A.L., Dhillon, B., Grigoriev, I., Kema, G.H. 2007. The finished genomic sequence of the Septoria tritici blotch pathogen Mycosphaerella graminicola. International Wheat Conference Proceedings [abstract]. Abstract No. 26.
Back to basics and beyond: increasing the level of resistance to Septoria tritici blotch in wheat - (Proceedings)
Goodwin, S.B. 2007. Back to basics and beyond: increasing the level of resistance to Septoria tritici blotch in wheat. Australasian Plant Pathlogy Society. 36:532-538.
Back to basics and beyond: increasing the level of resistance to Septoria tritici blotch in wheat     Reprint Icon - (Abstract Only)
Goodwin, S.B. 2007. Back to basics and beyond: increasing the level of resistance to Septoria tritici blotch in wheat. Proceedings of the 16 Biennial Australasian Plant Pathlogy Society Conference, Adelaide, Australia, p. 78.
Early and Late Peaks of Gene Expression During the Resistance Response of Wheat to Mycosphaerella Graminicola - (Abstract Only)
Goodwin, S.B., Adhikari, T.B. 2007. Early and Late Peaks of Gene Expression During the Resistance Response of Wheat to Mycosphaerella graminicola. Abstracts of the ComBio 2007 conference, Abstract SYM-16-01, Sydney, Australia, p. 44. Available at: http://www.asbmb.org.au/combio2007/abstracts/edited/GOODWIN-2007081011656.rtf.
Last Modified: 9/20/2014
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