Publications (Clicking on the reprint icon will take you to the publication reprint.)

Genome-wide identification of transcriptional start sites in the plant pathogen Pseudomonas syringae pv. tomato str. DC3000 - (Peer Reviewed Journal)

Filiatrault, M.J., Stodghill, P., Myers, C.R., Bronstein, P.A., Butcher, B.G., Lam, H., Grills, G., Schweitzer, P., Wang, W., Schneider, D.J., Cartinhour, S.W. 2011. Genome-wide identification of transcriptional start sites in the plant pathogen Pseudomonas syringae pv. tomato str. DC3000. PLoS One. 6(12). Available: http://www.plosone.org/article/info:doi/10.1371/journal.pone.0029335.

HOPX1 Ea (Eop3) in Erwinia Amylovora functions as an avirulence gene in apple and is regulated by HRPL - (Peer Reviewed Journal)

Bocsanczy, A., Schneider, D.J., Declerck, G.A., Cartinhour, S.W., Beer, S.V. 2011. HOPX1 Ea (Eop3) in Erwinia Amylovora functions as an avirulence gene in apple and is regulated by HRPL. Journal of Bacteriology. 194:553-560.

An ECF sigma factor mediated cell surface signaling system in Pseudomonas syringae pv. tomato DC3000 regulates gene expression in response to heterologous siderophores - (Peer Reviewed Journal)

Swingle, B.M., Markel, E.J., Maciak, C.L., Butcher, B., Myers, C., Stodghill, P., Cartinhour, S.W., Bao, Z. 2011. An ECF sigma factor mediated cell surface signaling system in Pseudomonas syringae pv. tomato DC3000 regulates gene expression in response to heterologous siderophores. Journal of Bacteriology. 193:5775-5783.

Progress in prokaryotic transcriptomics - (Review Article)

Filiatrault, M.J. 2011. Progress in prokaryotic transcriptomics. Current Opinion in Microbiology. 14(5):579-586.

The small RNA transcriptome of Pseudomonas syringae pathovar tomato DC3000 - (Abstract Only)

Filiatrault, M.J., Moll, S., Bao, Z., Maciak, C.L., Chen, H., Myers, C.R., Stodghill, P., Cartinhour, S.W. 2011. The small RNA transcriptome of Pseudomonas syringae pathovar tomato DC3000. International Conference on Pseudomonas syringae Pathovars. 13:20.

Characterization of the Fur regulon in Pseudomonas syringae pv. tomato DC3000 - (Peer Reviewed Journal)

Butcher, B.G., Bronstein, P., Myers, C., Stodghill, P., Bolton, J.J., Markel, E.J., Filiatrault, M.J., Swingle, B.M., Gaballa, A., Helmann, J.D., Schneider, D.J., Cartinhour, S.W. 2011. Characterization of the Fur regulon in Pseudomonas syringae pv. tomato DC3000. Journal of Bacteriology. 193(18):4598-4611. Available: http://www.ncbi.nlm.nih.gov/pubmed/21784947.

Bacterial effector HopF2 interacts with AvrPto and suppresses Arabidopsis innate immunity at the plasma membrane - (Peer Reviewed Journal)

Wu, S., Lu, D., Kabbage, M., Wei, H., Swingle, B.M., Dickman, M., He, P., Shan, L. 2011. Bacterial effector HopF2 interacts with AvrPto and suppresses Arabidopsis innate immunity at the plasma membrane. Molecular Plant-Microbe Interactions. 24(5):585-593.

Saturation mutagenesis of a CepR binding site as a means to identify new quorum-regulated promoters in Burkholderia cenocepacia - (Peer Reviewed Journal)

Wei, Y., Flores-Mireles, A.L., Costa, E.D., Ryan, G.T., Schneider, D.J., Winans, S.C. 2010. Saturation mutagenesis of a CepR binding site as a means to identify new quorum-regulated promoters in Burkholderia cenocepacia. Molecular Microbiology. 79(3):616-632.

Mutations in y-aminobutyric acid (GABA) transaminase genes in plants or Pseudomonas syringae reduce bacterial virulence - (Peer Reviewed Journal)

Park, D., Mirabella, R., Bronstein, P., Preston, G.M., Lim, C., Collmer, A., Schuurink, R.C. 2010. Mutations in gamma-aminobutyric acid (GABA) transaminase genes in plants or Pseudomonas syringae reduce bacterial virulence. Plant Journal. 64(2):318-330.

Global survey of Fur binding refines the iron responsive regulon of Pseudomonas syringae - (Abstract Only)

Bronstein, P., Butcher, B.G., Myers, C.R., Stodghill, P., Swingle, B.M., Cartinhour, S.W. 2010. Global survey of Fur binding refines the iron responsive regulon of Pseudomonas syringae [abstract]. p. 31.

Recombineering Pseudomonas syringae - (Abstract Only)

Swingle, B.M. 2010. Recombineering Pseudomonas syringae [abstract]. The 8th International Conference on Pseudomonas Syringae and Related Pathogens. 8/31.

Functional analysis of PSPTO_1203 a FecI-like ECF Sigma Factor of Pseudomonas syringae pv. tomato DC3000 - (Abstract Only)

Swingle, B.M. 2010. Functional analysis of PSPTO_1203 a FecI-like ECF Sigma Factor of Pseudomonas syringae pv. tomato DC3000. Gordon Research Conference Proceedings. 99/12.

Studying plant-pathogen interactions in the genomics era: beyond molecular Koch’s postulates to systems biology - (Review Article)

Schneider, D.J., Collmer, A. 2010. Studying plant-pathogen interactions in the genomics era: beyond molecular Koch’s postulates to systems biology. Annual Review of Phytopathology. 48:457-479.

Construction of an rsmX co-variance model and identification of five rsmX-like ncRNAs in Pseudomonas syringae pv. tomato DC3000 - (Peer Reviewed Journal)

Moll, S., Schneider, D.J., Stodghill, P., Myers, C.R., Cartinhour, S.W., Filiatrault, M.J. 2010. Construction of an rsmX co-variance model and identification of five rsmX-like ncRNAs in Pseudomonas syringae pv. tomato DC3000. RNA Biology. 7(5):1-10.

Analyzing the transcriptome of Pseudomonas syringae using high-throughput sequencing methodologies - (Abstract Only)

Filiatrault, M.J., Bronstein, P., Stodghill, P., Moll, S., Schneider, D.J., Cartinhour, S.W. 2010. Analyzing the transcriptome of Pseudomonas syringae using high-throughput sequencing methodologies. Meeting Abstract. p. 31.

Recombineering using RecET from Pseudomonas syringae - (Abstract Only)

Swingle, B.M., Bao, Z., Markel, E.J., Cartinhour, S.W. 2010. Recombineering using RecET from Pseudomonas syringae. Molecular Genetics of Bacteria and Phage. 61/34.

Oligonucleotide recombination: a hidden treasure - (Peer Reviewed Journal)

Swingle, B.M., Markel, E.J., Cartinhour, S.W. 2010. Oligonucleotide recombination: a hidden treasure. Bioengineered Bugs. 1(4):1-4.

Transcriptome analysis of Pseudomonas syringae identifies new genes, ncRNAs, and antisense activity - (Peer Reviewed Journal)

Filiatrault, M.J., Stodghill, P., Bronstein, P., Moll, S., Lindeberg, M., Grills, G., Schweitzer, P., Wang, W., Schroth, G., Luo, S., Khrebtukova, I., Thannhauser, T.W., Yang, Y., Butcher, B.G., Cartinhour, S.W., Schneider, D.J. 2010. Transcriptome analysis of Pseudomonas syringae identifies new genes, ncRNAs, and antisense activity. Journal of Bacteriology. 192(9):2359-2372.

Complete genome sequence of the plant pathogen Erwinia amylovora strain ATCC 49946 - (Peer Reviewed Journal)

Sebaihia, M., Bocsanczy, A.M., Biehl, B.S., Quail, M.A., Perna, N.T., Glasner, J.D., Declerck, G.A., Cartinhour, S.W., Schneider, D.J., Bentley, S.D., Parkhill, J., Beer, S.V. 2010. Complete genome sequence of the plant pathogen Erwinia amylovora strain ATCC 49946. Journal of Bacteriology. 192(7):2020-2021.

Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs - (Peer Reviewed Journal)

Oliver, H.F., Orsi, R.H., Ponnala, L., Keich, U., Wang, W., Sun, Q., Cartinhour, S.W., Filiatrault, M.J., Wiedmann, M., Boor, K.J. 2009. Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs. Biomed Central (BMC) Genomics. 10:641.

Oligonucleotide recombination in bacteria - (Abstract Only)

Swingle, B.M., Costantino, N., Court, D., Bubunenko, M.G., Cartinhour, S.W. 2009. Oligonucleotide recombination in bacteria. [abstract}. 17:28.

Oligo Recombination in Gram Negative Bacteria - (Abstract Only)

Swingle, B.M., Cartinhour, S.W., Court, D. 2009. Oligo Recombination in Gram Negative Bacteria. Molecular Genetics of Bacteria and Phage. p. 166.

Magnetic resonance spectra and statistical geometry - (Peer Reviewed Journal)

Earle, K.A., Sahu, I., Mainali, L., Schneider, D.J. 2009. Magnetic resonance spectra and statistical geometry. Applied Magnetic Resonance. 37:865-880.

Lifestyles of the effector-rich: genome-enabled characterization of bacterial plant pathogens - (Peer Reviewed Journal)

Collmer, A., Schneider, D.J., Lindeberg, M. 2009. Lifestyles of the effector-rich: genome-enabled characterization of bacterial plant pathogens. Plant Physiology. 150:1623-1630.

Integrating molecular and computational methods to evaluate the Pseudomonas syringae transcriptome I & II - (Proceedings)

Filiatrault, M.J., Stodghill, P. 2009. Integrating molecular and computational methods to evaluate the Pseudomonas syringae transcriptome I & II. American Phytopathological Society Abstracts.

Deletions in the repertoire of Pseudomonas syringae pv. tomato DC3000 type III secretion effector genes reveal functional overlap among effectors - (Peer Reviewed Journal)

Kvitko, B.H., Velasquez, A.C., Wei, C., Russell, A.B., Martin, G.B., Schneider, D.J., Collmer, A. 2009. Deletions in the repertoire of Pseudomonas syringae pv. tomato DC3000 type III secretion effector genes reveal functional overlap among effectors. PLoS Pathogens. 5(4):1-16.

Iron concentration limits growth rate and the expression of virulence factors in hrp-inducing minimal medium with Pseudomonas syringae - (Peer Reviewed Journal)

Kim, B., Park, J., Park, T., Bronstein, P., Schneider, D.J., Cartinhour, S.W., Shuler, M.L. 2009. Iron concentration limits growth rate and the expression of virulence factors in hrp-inducing minimal medium with Pseudomonas syringae. Applied and Environmental Microbiology. 25(9):2720-2726.

High-throughput identification of transcriptional start sites in Pseudomonas syringae - (Abstract Only)

Filiatrault, M.J., Stodghill, P., Wang, W., Schweitzer, P., Grills, G., Cartinhour, S.W., Schneider, D.J. 2009. High-throughput identification of transcriptional start sites in Pseudomonas syringae. American Society for Microbiology. p. 251.

Investigating the role of two iron-regulated small RNAs of Pseudomonas syringae - (Abstract Only)

Bronstein, P., Filiatrault, M.J., Stodghill, P., Schneider, D.J., Cartinhour, S.W. 2009. Investigating the role of two iron-regulated small RNAs of Pseudomonas syringae. American Society for Microbiology. p. 20.

Global transcriptional responses of Pseudomonas syringae DC3000 to changes in iron bioavailability in vitro - (Peer Reviewed Journal)

Bronstein, P., Filiatrault, M.J., Myers, C., Rutzke, M., Schneider, D.J., Cartinhour, S.W. 2008. Global transcriptional responses of Pseudomonas syringae DC3000 to changes in iron bioavailability in vitro. BMC Microbiology. 8:209.

A draft genome sequence of Pseudomonas syringae pv. tomato strain T1 reveals a repertoire of type III related genes significantly divergent from that of Pseudomonas syringae pv tomato strain DC3000 - (Peer Reviewed Journal)

Almeida, N.F., Yan, S., Lindeberg, M., Studholme, D., Schneider, D.J., Condon, B., Liu, H., Viana, C.J., Warren, A., Evans, C., Kemen, E., Maclean, D., Angot, A., Martin, G.B., Jones, J.D., Collmer, A., Setubal, J.C., Vinatzer, B.A. 2009. A draft genome sequence of Pseudomonas syringae pv. tomato strain T1 reveals a repertoire of type III related genes significantly divergent from that of Pseudomonas syringae pv tomato strain DC3000 . Molecular Plant-Microbe Interactions. 22(1):52-62.

An Inhibitor of Gram-Negative Bacterial Virulence Protein Secretion - (Peer Reviewed Journal)

Felise, H.B., Nguyen, H.V., Pfuetzner, R.A., Barry, K.C., Jackson, S.R., Blanc, M.P., Kline, T., Bronstein, P., Miller, S.I. 2008. An Inhibitor of Gram-Negative Bacterial Virulence Protein Secretion. Cell Host and Microbe. 4(4):325-336.

ECF Sigma Factor regulation in Pseudomonas syringae - (Abstract Only)

Swingle, B.M. 2008. Ecf sigma factor regulation in pseudomonas syringae. Molecular Genetics of Bacteria and Phage. p. 139.

Characterization of Promoter Motifs Regulated by ECF Sigma Factors of Pseudomonas syringae - (Abstract Only)

Swingle, B.M. 2008. Characterization of Promoter Motifs Regulated by ECF Sigma Factors of Pseudomonas syringae. Gordon Research Conference Proceedings. 4-2:p.14.

Characterization of the Promoter Motif Regulated by PSPTO_1209 a FecI-like ECF Sigma Factor of Pseudomonas syringae pv. tomato DC3000 - (Abstract Only)

Swingle, B.M., Schneider, D.J. 2008. Characterization of the Promoter Motif Regulated by PSPTO_1209 a FecI-like ECF Sigma Factor of Pseudomonas syringae pv. tomato DC3000. American Society for Microbiology. H-039:p.128.

Characterization of the PvdS-regulated promoter motif in Pseudomonas syringae pv. tomato DC3000 reveals regulon members and insights regarding PvdS function in other pseudomonads - (Peer Reviewed Journal)

Swingle, B.M., Thete, D., Moll, M., Myers, C., Schneider, D.J., Cartinhour, S.W. 2008. Characterization of the PvdS-regulated promoter motif in Pseudomonas syringae pv. tomato DC3000 reveals regulon members and insights regarding PvdS function in other pseudomonads. Molecular Microbiology. 68(4):871-889.

Characterization of two small RNAs of Pseudomonas syringae DC3000 - (Abstract Only)

Filiatrault, M.J., Bronstein, P., Stodghill, P., Cartinhour, S.W. 2008. Characterization of two small RNAs of Pseudomonas syringae DC3000. American Society for Microbiology Meeting.

Identification and Characterization of iron-responsive regulatory elements in Pseudomonas syringae pv tomato DC3000 - (Abstract Only)

Bronstein, P., Filiatrault, M.J., Cartinhour, S.W. 2008. Identification and Characterization of iron-responsive regulatory elements in Pseudomonas syringae pv tomato DC3000. American Society for Microbiology Meeting.

Roadmap to new virulence determinants in Pseudomonas syringae: Insights from Comparative Genomics and Genome Organization - (Review Article)

Lindeberg, M., Myers, C., Collmer, A., Schneider, D.J. 2008. Roadmap to new virulence determinants in Pseudomonas syringae: Insights from Comparative Genomics and Genome Organization. Molecular Plant-Microbe Interactions. 21:685-700.

A survey of the Pseudomonas syringae pv. tomato DC3000 type III secretion system effector repertoire reveals several effectors that are deleterious when expressed in Saccharomyces cerevisiae - (Peer Reviewed Journal)

Munkvold, K.R., Martin, M.E., Bronstein, P., Collmer, A. 2008. A survey of the Pseudomonas syringae pv. tomato DC3000 type III secretion system effector repertoire reveals several effectors that are deleterious when expressed in Saccharomyces cerevisiae. Molecular Plant-Microbe Interactions. 21(4):490-502.

Extracytoplasmic Function (ECF) Sigma Factor Gene Regulation in Pseudomonas syringae: Integrated Molecular and Computational Characterization of PvdS-Regulated Promoters - (Abstract Only)

Swingle, B.M., Thete,, D., Moll, M., Myers,, C., Schneider, D.J., Cartinhour, S.W. 2007. Extracytoplasmic Function (ECF) Sigma Factor Gene Regulation in Pseudomonas syringae: Integrated Molecular and Computational Characterization of PvdS-Regulated Promoters. Molecular Genetics of Bacteria and Phage. p. 262.

Pyoverdine and beyond: PvdS dependent gene regulation in Pseudomonas syringae - (Abstract Only)

Swingle, B.M., Thete,, D., Moll, M., Myers,, C., Schneider, D.J., Cartinhour, S.W. Pyoverdine and beyond: PvdS dependent gene regulation in Pseudomonas syringae. American Society for Microbiology Conference. 159A:p. 90.

Shotgun Sequencing of the Pseudomonas syringae DC3000 Transcriptome - (Abstract Only)

Filiatrault, M.J., Bronstein, P., Stodghill, P., Declerck, G.A., Schneider, D.J., Cartinhour, S.W. 2007. Shotgun Sequencing of the Pseudomonas syringae DC3000 Transcriptome. American Society for Microbiology Conference. p. 20.

Global transcriptional responses of Pseudomonas syringae DC3000 to changes in iron bioavailability in vitro - (Abstract Only)

Bronstein, P., Filiatrault, M.J., Kim, B., Moll, M., Rutzke, M., Shuler, M., Schneider, D.J., Cartinhour, S.W. 2007. Global transcriptional responses of Pseudomonas syringae DC3000 to changes in iron bioavailability in vitro. American Society for Microbiology. p. 20.

Pseudomonas aeruginosa Virulence and Pathogenesis Issues - (Book / Chapter)

Wagner, V.E., Filiatrault, M.J., Picardo, K.F., Iglewski, B.H. 2008. Pseudomonas aeruginosa Virulence and Pathogenesis Issues. Book Chapter. p. 129-158.