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United States Department of Agriculture

Agricultural Research Service

Research Project: FUNCTIONAL GENOMICS FOR IMPROVING NUTRIENTS AND QUALITY IN ALFALFA AND SOYBEAN

Location: Plant Science Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

White lupin cluster root acclimation to phosphorus deficiency and root hair development involve unique glycerophosphodiester phosphodiesterases     Reprint Icon - (Peer Reviewed Journal)
Cheng, L., Bucciarelli, B., Liu, J., Zinn, K., Miller, S.S., Patton-Vogt, J., Allan, D., Shen, J., Vance, C.P. 2011. White lupin cluster root acclimation to phosphorus deficiency and root hair development involve unique glycerophosphodiester phosphodiesterases. Plant Physiology. 156(3):1131-1148.
Quantitative trait loci, epigenetics, sugars, and microRNAs: quaternaries in phosphate acquisition and use     Reprint Icon - (Peer Reviewed Journal)
Vance, C.P. 2010. Quantitative trait loci, epigenetics, sugars, and microRNAs: quaternaries in phosphate acquisition and use. Plant Physiology. 154(2):582-588.
Gene expression patterns are correlated with genomic and genic structure in soybean     Reprint Icon - (Peer Reviewed Journal)
Woody, J.L., Severin, A., Bolon, Y.E., Joseph, B., Diers, B.W., Farmer, A.T., Weeks, N.T., Muehlbauer, G.J., Nelson, R., Grant, D.M., Specht, J.E., Graham, M.A., Cannon, S.B., May, G.D., Vance, C.P., Shoemaker, R.C. 2011. Gene expression patterns are correlated with genomic and genic structure in soybean. Genome. 54(1):10-18.
Crucial roles of sucrose and microRNA399 in systemic signaling of P deficiency: a tale of two team players?     Reprint Icon - (Review Article)
Liu, J., Vance, C.P. 2010. Crucial roles of sucrose and microRNA399 in systemic signaling of P deficiency: a tale of two team players? Plant Signaling and Behavior. 12(5):1-5.
Fast Neutron Mutagenesis of Soybean: A Resource for the Community - (Abstract Only)
Bolon, Y.E., Haun, W., Muehlbauer, G., Orf, J., Naeve, S., Stupar, R., Vance, C.P. 2010. Fast Neutron Mutagenesis of Soybean: A Resource for the Community [abstract]. 13th Biennial Molecular and Cellular Biology of the Soybean Conference, August 8-11, 2010, Durham, North Carolina.
Rna-Seq Atlas of Glycine Max: a Guide to the Soybean Transcriptome     Reprint Icon - (Peer Reviewed Journal)
Severin, A.J., Woody, J.L., Bolon, Y.E., Joseph, B., Diers, B.W., Farmer, A.D., Muehlbauer, G.J., Nelson, R., Grant, D.M., Specht, J.E., Graham, M.A., Cannon, S.B., May, G.D., Vance, C.P., Shoemaker, R.C. 2010. RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome. Biomed Central (BMC) Plant Biology. 10:610.
Genetic Analysis of Genome-Wide Transcriptional Regulation through eQTL Mapping in Soy - (Abstract Only)
Bolon, Y.E., Hyten, D.L., Orf, J., Vance, C.P., Muehlbauer, G. 2010. Genetic Analysis of Genome-Wide Transcriptional Regulation through eQTL Profiling in Soy [abstract]. Vth International Conference on Legume Genomics and Genetics, July 2-8, 2010, Pacific Grove, California. p. 128.
Legume genomics: promise versus reality - (Abstract Only)
Vance, C.P. 2010. Legume genomics: promise versus reality [abstract]. XIII National Meeting of the Spanish Society of Nitrogen Fixation and II Portuguese-Spanish Congress on Nitrogen Fixation, June 15-18, 2010, Zaragoza Spain. p. 5-6. Available: http://digital.csic.es/bitstream/10261/25138/1/Book_Contributions_%20XIIISEFIN2010.pdf.
Nitric oxide is involved in phosphorus deficiency-induced cluster root development and citrate exudation in white lupin     Reprint Icon - (Peer Reviewed Journal)
Wang, B.L., Tang, X.Y., Cheng, L.Y., Zhang, A.Z., Zhang, W.H., Zhang, F.S., Liu, J.Q., Cao, Y., Allan, D.L., Vance, C.P., Shen, J.B. 2010. Nitric oxide is involved in phosphorus deficiency-induced cluster-root development and citrate exudation in white lupin. New Phytologist. 187(4):1112-1123.
MicroRNAs Expression Profile in Common Bean (Phaseolus vulgaris) under Nutrient Deficiency Stresses and Manganese Toxicity     Reprint Icon - (Peer Reviewed Journal)
Valdes-Lopez, O., Yang, S.H., Aparicio-Fabre, R., Graham, P.H., Reyes, J., Vance, C.P., Hernandez, G. 2010. MicroRNA Expression Profile in Common Bean (Phaseolus vulgaris) under Nutrient Deficiency Stresses and Manganese Toxicity. New Phytologist. 187(3):805-818.
Complementary Genetic and Genomic Approaches Help Characterize the Linkage Group I Seed Protein QTL in Soybean     Reprint Icon - (Peer Reviewed Journal)
Bolon, Y.E., Joseph, B., Cannon, S.B., Graham, M.A., Diers, B.W., Farmer, A.D., May, G.D., Muehlbauer, G.J., Specht, J.E., Tu, Z., Weeks, N.T., Xu, W.W., Shoemaker, R.C., Vance, C.P. 2010. Complementary Genetic and Genomic Approaches Help Characterize the Linkage Group I Seed Protein QTL in Soybean. Biomed Central (BMC) Plant Biology. 10:41. Available: http://www.biomedcentral.com/1471-2229/10/41.
Systemic Signaling and Local Sensing of Phosphate in Common Bean: Cross-Talk Between Photosynthate and MicroRNA399     Reprint Icon - (Peer Reviewed Journal)
Liu, J., Allan, D.L., Vance, C.P. 2010. Systemic Signaling and Local Sensing of Phosphate in Common Bean: Cross-Talk Between Photosynthate and MicroRNA399. Molecular Plant. 3(2):428-437.
Molecular Analysis of SCARECROW Genes Expressed in White Lupin Cluster Roots     Reprint Icon - (Peer Reviewed Journal)
Sbabou, L., Bucciarelli, B., Miller, S.S., Liu, J., Brhada, F., Filali-Maltouf, A., Allan, D., Vance, C.P. 2010. Molecular Analysis of SCARECROW Genes Expressed in White Lupin Cluster Roots. Journal of Experimental Botany. 61(5):1351-1363.
Biochemical Approaches to Improved Nitrogen Fixation - (Abstract Only)
Vance, C.P., Schultz, J., Denton, M., Tesfaye, M., Samac, D.A., Russelle, M.P., Hernandez, G., Ramirez, M. 2009. Biochemical approaches to improved nitrogen fixation [abstract]. XIII National Congress of Biochemistry and Plant Molecular Biology and 6th Symposium Mexico-USA, November 9-13, 2009, Guanajuato, Mexico. 2009 CDROM.
Identification of Nutritional Stress-Responsive miRNAs in Phaseolus vulgaris - (Abstract Only)
Valdes-Lopez, O., Yang, S.H., Graham, P.H., Reyes, J.L., Vance, C.P., Hernandez, G. 2010. Identification of Nutritional Stress-Responsive miRNAs in Phaseolus vulgaris [abstract]. XVIII Plant and Animal Genome Conference Proceedings, January 9-13, 2010, San Diego, California. Abstract W367.
Global changes in the transcript and metabolic profiles during symbiotic nitrogen fixation in phosphorus-stressed common bean plants     Reprint Icon - (Peer Reviewed Journal)
Hernandez, G., Valdes-Lopez, O., Ramirez, M., Goffard, N., Weiller, G., Aparicio-Fabre, R., Fuentes, S., Erban, A., Kopka, J., Udvardi, M.K., Vance, C.P. 2009. Global changes in the transcript and metabolic profiles during symbiotic nitrogen fixation in phosphorus-stressed common bean plants. Plant Physiology. 151(3):1221-1238.
Single-Feature Polymorphism Discovery by Computing Probe Affinity Shape Powers     Reprint Icon - (Peer Reviewed Journal)
Xu, W., Cho, S., Yang, S.H., Bolon, Y.E., Jia, H., Xiong, Y., Bilgic, H., Boddu, J., Muehlbauer, G. 2009. Single-feature polymorphism discovery by computing probe affinity shape powers. BioMed Central (BMC) Genetics. 10:48.
Knock Down of Cell Division Cycle 16 Reveals an Inverse Relationship Between Lateral Root and Nodule Numbers and a Link to Auxin in Medicago truncatula     Reprint Icon - (Peer Reviewed Journal)
Kuppusamy, K.T., Ivashuta, S., Bucciarelli, B., Vance, C.P., Gantt, S.J., VandenBosch, K.A. 2009. Knockdown of Cell Division Cycle16 Reveals an Inverse Relationship between Lateral Root and Nodule Numbers and a Link to Auxin in Medicago truncatula. Plant Physiology. 151(3):1155-1166.
Glycerophosphodiester phosphodiesterases play an important role in phosphate recycling and phosphate sensing in white lupin - (Abstract Only)
Cheng, L., Liu, J., Miller, S.S., Bucciarelli, B., Zinn, K.E., Zhang, F., Allan, D.A., Shen, J., Vance, C.P. 2009. Glycerophosphodiester phosphodiesterases play an important role in phosphate recycling and phosphate sensing in white lupin [abstract]. American Society of Plant Biologists Annual Meeting, July 18-22, 2009, Honolulu, Hawaii. Paper No. P08022.
Transcription Profiling and Mutation Detection of Soybean Homoeologous Genes - (Proceedings)
Stupar, R.M., Lin, J., Jackson, S.A., Bolon, Y.E., Muehlbauer, G.J., Naeve, S., Orf, J.H., Vance, C.P., Haun, W.J. 2009. Transcription profiling and mutation detection of soybean homoeologous genes [abstract]. In: Developing a Global Soy Blueprint for a Safe Secure and Sustainable Supply, World Soybean Conference Research VIII, August 9-16, 2009, Beijing, China. p. 109. Available: www.wsrc2009.cn/en/index.asp.
Application of plant genomics for improved symbiotic nitrogen fixation in plants - (Book / Chapter)
Vance, C.P. 2009. Application of plant genomics for improved symbiotic nitrogen fixation in plants. In: Emerich, D.W., Krishnan, H.B., editors. Nitrogen Fixation in Crop Production. Agronomy Monograph 52. Madison, WI: American Society of Agronomy, Crop Science Society of America, Soil Science Society of America. p. 239-264.
Coordination between carbon and nitrogen metabolism in nitrogen fixing bean nodules - (Abstract Only)
Lara Flores, M., Blanco, L., Silvente, S., Gaona, Y., Vance, C.P., Reddy, P.M. 2008. Coordination between carbon and nitrogen metabolism in nitrogen fixing bean nodules [abstract]. IV International Conference on Legume Genomics and Genetics, December 7-12, 2008, Puerto Vallarta, Mexico. Abstract No. L11. p. 22.
Genomic Studies in Soybean: Toward Understanding Seed Oil and Protein Production - (Abstract Only)
Bolon, Y.E., Joseph, B., Cannon, S.B., Diers, B., Farmer, A., Graham, M.A., May, G., Muehlbauer, G., Specht, J., Tu, Z., Weeks, N., Xu, W., Shoemaker, R.C., Vance, C.P. 2008. Genomic Studies in Soybean: Toward Understanding Seed Oil and Protein Production [abstract]. IV International Conference on Legume Genomics and Genetics, December 7-12, 2008, Puerto Vallarta, Mexico. Abstract No. W28. p. 101 and Abstract No. P57, p. 63.
Legume genomics: where we have been, where are we going? - (Abstract Only)
Vance, C.P. 2008. Legume genomics: where we have been, where are we going? [abstract]. IV International Conference on Legume Genomics and Genetics, December 7-12, 2008, Puerto Vallarta, Mexico. Abstract No. L1. p. 20.
Essential role of MYB transcription factor: PvPHR1 and microRNA: PvmiR399 in the phosphorus deficiency signaling in common bean roots     Reprint Icon - (Peer Reviewed Journal)
Valdes-Lopez, O., Arenas-Huertero, C., Ramirez, M., Lara, M., Sanchez, F., Girard, L., Vance, C.P., Reyes, J., Hernandez, G. 2008. Essential Role of MYB Transcription Factor: PvPHR1 and microRNA: PvmiR399 in the Phosphorus-Deficiency Signalling in Common Bean Roots. Plant Cell and Environment. 31(12):1834-1843.
Molecular genetic analysis of seed protein control at Linkage Group I in soybean near-isogenic lines - (Abstract Only)
Bolon, Y.E., Joseph, B., Cannon, S.B., Diers, B., Farmer, A., Graham, M.A., May, G., Muehlbauer, G., Specht, J., Weeks, N., Shoemaker, R.C., Vance, C.P. 2008. Molecular Genetic Analysis of Seed Protein Control at Linkage Group I in Soybean Near-Isogenic Lines [abstract]. 12th Biennial Conference on Molecular and Cellular Biology of the Soybean, July 20-23, 2008, Indianapolis, Indiana.
Plants without arbuscular mycorrhizae     Reprint Icon - (Book / Chapter)
Vance, C.P. 2008. Plants without arbuscular mycorrhizae. In: White, P.J., Hammond, J.P., editors. Ecophysiology of Plant-Phosphorus Interactions. Volume 7. Dordrecht, The Netherlands: Springer Publishing. p. 117-142.
Molecular cloning, characterization and regulation of two different NADH-glutamate synthase cDNAs in bean nodules     Reprint Icon - (Peer Reviewed Journal)
Blanco, L., Reddy, P.M., Silvente, S., Bucciarelli, B., Khandual, S., Alvarado-Affantrange, X., Sanchez, F., Miller, S.S., Vance, C.P., Lara-Flores, M. 2008. Molecular cloning, characterization and regulation of two different NADH-glutamate synthase cDNAs in bean nodules. Plant Cell and Environment. 31:454-472.
Auxin mediates patterning of cluster root development induced by phosphorus deficiency in Lupinus albus - (Abstract Only)
Shen, J., Cheng, L., Liu, J., Zhang, F., Allan, D.L., Culler, A., Cohen, J., Vance, C.P. 2008. Auxin mediates patterning of cluster root development induced by phosphorus deficiency in Lupinus albus [abstract]. American Society of Plant Biologists Annual Meeting, Pan American Congress on Plants and BioEnergy, June 22-25, 2008, Merida, Mexico. Abstract No. P33009. Available: http://abstracts.aspb.org/pb2008/public/P33/P33009.html.
Essential role of MYB transcription factor PvPHR1 in phosphate starvation signaling in common bean (Phaseolus vulgaris) - (Abstract Only)
Hernandez, G., Valdes-Lopez, O., Ramirez, M., Lara, M., Vance, C.P., Girard, L., Sanchez, F., Reyes, J.L. 2008. Essential role of MYB transcription factor PvPHR1 in phosphate starvation signaling in common bean (Phaseolus vulgaris) [abstract]. American Society of Plant Biologists Annual Meeting, Pan American Congress on Plants and BioEnergy, June 22-25, 2008, Merida, Mexico. Abstract No. P10012. Available: http://abstracts.aspb.org/pb2008/public/P10/P10012.html.
Scarecrow (SCR) mediates root development in Lupinus albus and Medicago truncatula - (Abstract Only)
Sbabou, L., Podkowinski, J., Bucciarelli, B., Miller, S.S., Allan, D., Vance, C.P. 2007. Scarecrow (SCR) mediates root development in Lupinus albus and Medicago truncatula [abstract]. Botany and Plant Biology 2007 Joint Congress, July 7-11, 2007, Chicago, Illinois. Abstract No. P26023. Available: http://2007.botanyconference.org/engine/search/index.php?func=detail&aid=498.
Legume biology: sequence to seeds     Reprint Icon - (Other)
O'Brian, M.R., Vance, C.P. 2007. Legume biology: sequence to seeds. Plant Physiology. 144:537.
Genomic and genetic control of phosphate stress in legumes     Reprint Icon - (Peer Reviewed Journal)
Gebeyaw, M.T., Liu, J., Allan, D.L., Vance, C.P. 2007. Genomic and genetic control of phosphate stress in legumes. Plant Physiology. 144:594-603.
Phosphorus stress in common bean: root transcript and metabolic responses     Reprint Icon - (Peer Reviewed Journal)
Hernandez, G., Ramirez, M., Valdes-Lopez, O., Gebeyaw, M.T., Graham, M.A., Czechowski, T., Schlereth, A., Wandrey, M., Erban, A., Cheung, F., Wu, H., Lara, M., Town, C.D., Kopka, J., Udvardi, M.K., Vance, C.P. 2007. Phosphorus stress in common bean: root transcript and metabolic responses. Plant Physiology. 144:752-767.
Sharing phenotypic data: a coding system and a developmental model     Reprint Icon - (Book / Chapter)
Hanan, J., Bucciarelli, B., Vance, C.P. 2007. Sharing phenotypic data: a coding system and a developmental model. In: Mathesius, U., Journet, E.P., Sumner, L.W., editors. Medicago truncatula Handbook. ISBN 0-9754303-1-9. Available: http://www.noble.org/MedicagoHandbook/.
White Lupin Nitrogen Fixation under Phosphorus Deficiency     Reprint Icon - (Peer Reviewed Journal)
Schulze, J., Temple, G., Temple, S.J., Beschow, H., Vance, C.P. 2006. Nitrogen fixation by white lupin under phosphorus deficiency. Annals of Botany. 98:731-740.
Carbon and Nitrogen Metabolism in Legume Nodules - (Book / Chapter)
Vance, C.P. 2008. Carbon and Nitrogen Metabolism in Legume Nodules. In: Dilworth, M.J., James, E.K., Sprent, J.I., Newton, W.E., editors. Nitrogen-Fixing Leguminous Symbioses. Volume 7. Dordrecht, The Netherlands: Springer. p. 293-320.
Standardized Method for Analysis of Medicago Truncatula Phenotypic Development     Reprint Icon - (Peer Reviewed Journal)
Bucciarelli, B., Hanan, J., Palmquist, D.E., Vance, C.P. 2006. A standardized method for analysis of Medicago truncatula phenotypic development. Plant Physiology. 142:207-219.
Last Modified: 8/21/2014
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