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United States Department of Agriculture

Agricultural Research Service

Research Project: GENOMIC APPROACHES TO IMPROVING TRANSPORT AND DETOXIFICATION OF SELECTED MINERAL ELEMENTS IN CROP PLANTS

Location: Plant, Soil and Nutrition Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Genetic and physiological analysis of iron content and bioavailability in maize kernels - (Peer Reviewed Journal)
Lung'Aho, M., Mwaniki, A., Szalma, S.J., Hart, J., Rutzke, M., Kochian, L.V., Glahn, R.P., Hoekenga, O. 2011. Genetic and physiological analysis of iron content and bioavailability in maize kernels. PLoS One. 6(6):e20429. DOI:10.1371/journal.pone.0020429.
Development of a novel aluminum tolerance phenotyping platform used for comparisons of cereal aluminum tolerance and investigations into rice aluminum tolerance mechanisms - (Peer Reviewed Journal)
Famoso, A., Shaff, J., Clark, R., Mccouch, S., Kochian, L.V. 2010. Development of a novel aluminum tolerance phenotyping platform used for comparisons of cereal aluminum tolerance and investigations into rice aluminum tolerance mechanisms. Plant Physiology. 153:1678-1691.
Two functionally distinct members of the MATE (multidrug and toxic compound extrusion) family of transporters potentially underlie two major Al tolerance QTL in maize - (Peer Reviewed Journal)
Maron, L., Guimaraes, C., Pineros, M., Magalhaes, J., Pleiman, J., Mao, C., Kochian, L.V. 2010. Two functionally distinct members of the MATE (multidrug and toxic compound extrusion) family of transporters potentially underlie two major Al tolerance QTL in maize. Plant Journal. 61:728-740.
Phosphorylation at S384 regulates the activity of the TaALMT1 malate transporter that underlies aluminum resistance in wheat - (Peer Reviewed Journal)
Ligaba, A., Kochian, L.V., Pineros, M. 2009. Phosphorylation at S384 regulates the activity of the TaALMT1 malate transporter that underlies aluminum resistance in wheat. Plant Journal. 60:411-423.
Geochem-Ez: a Chemical Speciation Program with Greater Power and Flexibility - (Peer Reviewed Journal)
Shaff, J., Schultz, B., Craft, E.J., Clark, R., Kochian, L.V. 2010. GEOCHEM-EZ: a chemical speciation program with greater power and flexibility. Plant and Soil Journal. 330:207-214.
Generation of Arabidopsis mutants by heterologous expression of a full length cDNA library from tomato fruits - (Peer Reviewed Journal)
Wang, Y., Mosebach, C.M., Kibbe, A.S., Ryhal, M.K., Jones, A.D., Palmer, J.A., Kochian, L.V. 2009. Generation of Arabidopsis mutants by heterologous expression of a full length cDNA library from tomato fruits. Plant Molecular Biology Reporter. 27:454-461.
Transcriptional regulation of metal transport genes and mineral nutrition during acclimation to cadium and zinc in the Cd/Zn hyperaccumulator, Thlaspi caerulescens (Ganges population) - (Peer Reviewed Journal)
Kuepper, H., Kochian, L.V. 2010. Transcriptional regulation of metal transport genes and mineral nutrition during acclimation to cadium and zinc in the Cd/Zn hyperaccumulator, Thlaspi caerulescens (Ganges population). New Phytologist. 185(1):114-129.
Aluminum induced proteome changes in tomato cotyledons - (Peer Reviewed Journal)
Zhou, S., Sauve, R., Thannhauser, T.W. 2009. Aluminum induced proteome changes in tomato cotyledons. Plant Signaling and Behavior. 4(8):769-772.
Protein N- and C-Termini Identification Using Mass Spectrometry and Isotopic Labeling - (Peer Reviewed Journal)
Xiang, B., Yang, X., Thannhauser, T.W. 2009. Protein N- and C-Termini Identification Using Mass Spectrometry and Isotopic Labeling. Journal of Rapid Communications in Mass Spectroscopy. 23:2102-2106.
Proteome changes induced by aluminum stress in tomato roots - (Peer Reviewed Journal)
Zhou, S., Sauve, R., Thannhauser, T.W. 2009. Proteome changes induced by aluminum stress in tomato roots. Journal of Experimental Botany. 60:1849-1857.
Drosophila ABC Transporter DmHMT-1 Confers Tolerance to Cadmium. - (Peer Reviewed Journal)
Sooksa-Nguan, T., Yakubov, B., Kozlovskyy, V.I., Barcume, C.M., Thannhauser, T.W., Rutzke, M.A., Hart, J.J., Kochian, L.V., Vatamaniuk, O.K. 2009. Drosophila ABC Transporter DmHMT-1 Confers Tolerance to Cadmium. Journal of Biological Chemistry. 284:354-362.
Maize aluminum tolerance - (Book / Chapter)
Kochian, L.V., Hoekenga, O., Magalhaes, J., Pineros, M. 2009. Maize aluminum tolerance. In: Bennetzen, J.L., Hale, E.S.C., editors. Handbook of Maize: It's Biology. New York, NY: Springer. p. 367-380.
Aluminum-activated citrate and malate transporters from the MATE and ALMT families function independently to confer Arabidopsis aluminum tolerance - (Peer Reviewed Journal)
Liu, J., Magalhaes, J., Shaff, J., Kochian, L.V. 2009. Aluminum-activated citrate and malate transporters from the MATE and ALMT families function independently to confer Arabidopsis aluminum tolerance. Plant Journal. 57(3):389-399.
Investigation of Heavy Metal Hyperaccumulation at the Cellular Level: Development and Characterization of Thlaspi caerulescens Suspension Cell Lines - (Peer Reviewed Journal)
Klein, M., Sekimoto, H., Milner, M., Kochian, L.V. 2008. Investigation of Heavy Metal Hyperaccumulation at the Cellular Level: Development and Characterization of Thlaspi caerulescens Suspension Cell Lines. Plant Physiology. 147:2006-2016.
Role of Copper,zinc-Superoxide Dismutase in Catalyzing Nitrotyrosine Formation in Murine Liver - (Peer Reviewed Journal)
Zhu, J., Zhang, X., Roneker, C.A., Mcclung, J.P., Zhang, S., Thannhauser, T.W., Ripoll, D.R., Sun, Q., Lei, X. 2008. ROLE OF COPPER,ZINC-SUPEROXIDE DISMUTASE IN CATALYZING NITROTYROSINE FORMATION IN MURINE LIVER. Journal of Free Radical Biology and Medicine. 45:611-618.
Investigating Heavy-metal Hyperaccumulation using Thlaspi caerulescens as a Model System - (Peer Reviewed Journal)
Milner, M., Kochian, L.V. 2008. Investigating Heavy-metal Hyperaccumulation using Thlaspi caerulescens as a Model System. Annals Of Botany. 102(1):3-13.
Transcriptional profiling of Al toxicity and tolerance responses in maize roots - (Peer Reviewed Journal)
Maron, L.G., Matias, K., Mao, C., Menossi, M., Kochian, L.V. 2008. Transcriptional profiling of Al toxicity and tolerance responses in maize roots. New Phytologist. 179:116-128.
Getting something for nothing: Regeneration of peptide signals from apparently exhausted MALDI samples by “waterboarding" - (Abstract Only)
Yang, X., Thannhauser, T.W. 2008. Getting something for nothing: Regeneration of peptide signals from apparently exhausted MALDI samples by “waterboarding". Journal of Biomolecular Techniques. Vol. 19:52.
Reproducibility of an Integrated Quantitation Method Coupling 2D GeLC-MS/MS with the emPAI for Comparative Proteomics - (Abstract Only)
Yang, Y., Zhang, S., Thannhauser, T.W. 2008. Reproducibility of an Integrated Quantitation Method Coupling 2D GeLC-MS/MS with the emPAI for Comparative Proteomics. Journal of Biomolecular Techniques. Vol. 19:52.
Novel properties of the wheat aluminum tolerance organic acid transporter (TaALMT1) revealed by electrophysiological characterization in Xenopus oocytes: Functional and structural implications - (Peer Reviewed Journal)
Pineros, M., Kochian, L.V. 2008. Novel properties of the wheat aluminum tolerance organic acid transporter (TaALMT1) revealed by electrophysiological characterization in Xenopus oocytes: Functional and structural implications. Plant Physiology. 147:2131-2146.
Transcriptional regulation in maize roots under aluminum stress - (Abstract Only)
Maron, L., Kirst, M., Mao, C., Menossi, M., Kochian, L.V. 2008. Transcriptional regulation in maize roots under aluminum stress. Plant and Animal Genome Conference.
Spatial Coordination of Aluminum Uptake, Production of Reactive Oxygen Species, Callose Production and Wall Rigidification in Maize Roots - (Peer Reviewed Journal)
Jones, D.L., Blancaflor, E., Kochian, L.V., Gilroy, S. 2008. Spatial Coordination of Aluminum Uptake, Production of Reactive Oxygen Species, Callose Production and Wall Rigidification in Maize Roots. Plant Cell and Environment. 29:1309-1318.
Characterization of AtALMT1 expression in aluminum inducible malate release and its role for rhizotoxic stress in Arabidopsis - (Peer Reviewed Journal)
Kobayashi, Y., Hoekenga, O., Ito, H., Nakashima, M., Saito, S., Shaff, J., Maron, L., Pineros, M., Kochian, L.V., Koyama, H. 2008. Characterization of AtALMT1 expression in aluminum inducible malate release and its role for rhizotoxic stress in Arabidopsis. Plant Physiology. 145:843-852.
Aluminum-activated citrate and malate transporters encoded by distinct Al tolerance genes function independently in Arabidopsis - (Abstract Only)
Liu, J., Magalhaes, J., Shaff, J., Kochian, L.V. 2008. Aluminum-activated citrate and malate transporters encoded by distinct Al tolerance genes function independently in Arabidopsis. Plant and Animal Genome Conference.
Not all ALMT1-type transporters mediate aluminum-activated organic acid responses: The case of AmALMT1-an anion selective transporter - (Peer Reviewed Journal)
Pineros, M., Cancado, G., Maron, L., Lyi, S., Menossi, M., Kochian, L.V. 2008. Not all ALMT1-type transporters mediate aluminum-activated organic acid responses: The case of AmALMT1-an anion selective transporter. Plant Journal. 53:352-367.
Elucidating the Molecular Determinants of Aluminum Tolerance in Sorghum, Maize and Rice - (Abstract Only)
Kochian, L.V., Magalhaes, J., Liu, J., Pineros, M., Maron, L. 2008. Elucidating the Molecular Determinants of Aluminum Tolerance in Sorghum, Maize and Rice. Plant and Animal Genome Conference.
A native Zn/Cd transporting P1B ATPase from natural overexpression in a hyperaccumulator plant reveals post-translational processing - (Peer Reviewed Journal)
Parameswaran, A., Leitenmaier, B., Yang, M., Kroneck, P., Welte, W., Lutz, G., Papoyan, A., Kochian, L.V., Kupper, H. 2008. A native Zn/Cd transporting P1B ATPase from natural overexpression in a hyperaccumulator plant reveals post-translational processing. Biochemical and Biophysical Research Communications. 363:51-56.
A Comparison of nLC-ESI-MS/MS and nLC-MALDI-MS/MS for GeLC-based Protein Identification and iTRAQ-based Shotgun Quantitative Proteomics - (Peer Reviewed Journal)
Yang, Y., Howe, K.J., Zhang, S., Wilson, D., Moser, F., Irwin, D., Thannhauser, T.W. 2007. A comparison of nlc-esi-ms/ms and nlc-maldi-ms/ms for gelc-based protein identification and itraq-based shotgun quantitative proteomics. Journal of Biomolecular Techniques. 18:226-237.
The effect of plant cadmium and zinc status on root and shoot heavy metal accumulation in the heavy metal hyperaccumulator, Thlaspi caerulescens - (Peer Reviewed Journal)
Papoyan, A., Pineros, M., Kochian, L.V. 2007. The effect of plant cadmium and zinc status on root and shoot heavy metal accumulation in the heavy metal hyperaccumulator, Thlaspi caerulescens. New Phytologist. 175:51-58.
A Comparison of nLC-ESI-MS/MS and nLC-MALDI-MS/MS for GeLC-based Protein Identification and iTRAQ-based Shotgun Quantitative Proteomics - (Abstract Only)
Yang, Y., Howe, K.J., Zhang, S., Thannhauser, T.W. 2007. A comparison of nlc-esi-ms/ms and nlc-maldi-ms/ms for gelc-based protein identification and itraq-based shotgun quantitative proteomics [abstract]. Journal of Biomolecular Techniques. 18:66.
Genetic Diversity for Aluminum Tolerance in Sorghum - (Peer Reviewed Journal)
Caniato, F., Guilamraes, C., Schaffert, R., Alves, V., Kochian, L.V., Borem, A., Klein, P., Magalhaes, J. 2007. Genetic Diversity for Aluminum Tolerance in Sorghum. Theoretical and Applied Genetics. 114(5):863-876.
The effects of Selenocysteine Se-Methyltransferase on Selenium metabolism in Broccoli - (Abstract Only)
Zhou, X., Lyi, M., Heller, L., Rutzke, M., Welch, R.M., Kochian, L.V., Li, L. 2007. The effects of Selenocysteine Se-Methyltransferase on Selenium metabolism in Broccoli [abstract]. Plant Physiology. p. 113.
Joint linkage-association analysis of aluminum tolerance in maize - (Abstract Only)
Hoekenga, O., Buckler Iv, E.S., Maron, L., Magalhaes, J., Kirst, M., Krill, A., Lyi, M., Rose, J., Thannhauser, T.W., Kochian, L.V. 2007. Joint linkage-association analysis of aluminum tolerance in maize [abstract]. Plant and Animal Genome VX Conference Abstracts. p. 55.
Molecular Cloning and Characterization of AltSB, A Major Aluminum Tolerance Gene in Sorghum - (Abstract Only)
Liu, J., Magalhaes, J., Guimaraes, C., Lana, U., Alves, V., Hoekenga, O., Shaff, J., Pineros, M., Wang, Y., Klein, P., Schaffert, R., Kochian, L.V. 2007. Molecular Cloning and Characterization of AltSB, A Major Aluminum Tolerance Gene in Sorghum [abstract]. Plant and Animal Genome VX Conference Abstracts. p. 59.
Positional Cloning and Characterization of AltSB, a Major Aluminum Tolerance Gene in Sorghum: Toward the Identification of the Molecular and Physiological basis of Allelic effects - (Abstract Only)
Magalhaes, J., Liu, J., Alves, V., Guimaraes, C., Wang, Y., Lana, U., Schaffert, R., Hoekenga, O., Klein, P., Kochian, L.V. 2007. Positional Cloning and Characterization of AltSB, a Major Aluminum Tolerance Gene in Sorghum: Toward the Identification of the Molecular and Physiological basis of Allelic effects[abstract]. Plant and Animal Genome VX Conference Abstracts. p. 58.
Elucidating the Molecular Determinants of Aluminum Tolerance in Sorghum and Maize - (Abstract Only)
Kochian, L.V., Magalhaes, J., Liu, J., Hoekenga, O., Guimaraes, C., Alves, V., Maron, L., Shaff, J., Lyi, M., Schaffert, R. 2006. Elucidating the Molecular Determinants of Aluminum Tolerance in Sorghum and Maize [abstract]. Plant and Animal Genome VX Conference Abstracts. p. 42.
Last Modified: 9/10/2014
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