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United States Department of Agriculture

Agricultural Research Service

Research Project: GENETIC MECHANISMS AND MOLECULAR GENETIC RESOURCES FOR MAIZE

Location: Plant Genetics Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Expression of almond KNOTTED1 homologue (PdKn1) anticipates adventitious shoot initiation     Reprint Icon - (Peer Reviewed Journal)
Santos, A., Oliver, M.J., Sanchez, A., Oliviera, M. 2011. Expression of almond KNOTTED1 homologue (PdKn1) anticipates adventitious shoot initiation. In Vitro Cellular and Developmental Biology - Plants. 48:40-49.
Multi-source and ontology-based retrieval engine for maize mutant phenotypes - (Peer Reviewed Journal)
Green, J.M., Harnsomburana, J., Schaeffer, M.L., Lawrence, C.J., Shyu, C. 2011. Multi-source and ontology-based retrieval engine for maize mutant phenotypes. Database: The Journal of Biological Databases and Curation. 2011:Article ID bar012. Available: http://database.oxfordjournals.org/content/2011/bar012.
A sister group metabolomic contrast delineates the biochemical regulation underlying desiccation tolerance in Sporobolus stapfianus - (Peer Reviewed Journal)
Oliver, M.J., Guo, L., Alexander, D.C., Ryals, J.A., Wone, B., Cushman, J.C. 2011. A sister group metabolomic contrast delineates the biochemical regulation underlying desiccation tolerance in Sporobolus stapfianus. The Plant Cell. 23(4):1231-1248.
Proteome analysis of leaves of the desiccation-tolerant grass, Sporobolus stapfianus, in response to desiccation - (Peer Reviewed Journal)
Oliver, M.J., Jain, R., Balbuena, T.S., Agrawal, G.K., Gasulla, F., Thelen, J.J. 2010. Proteome analysis of leaves of the desiccation-tolerant grass, Sporobolus stapfianus, in response to desiccation. Phytochemistry. 72:1273-1284.
Mads-Box Genes in Maize: Frequent Targets of Selection During Domestication - (Peer Reviewed Journal)
Zhao, Q., Weber, A., McMullen, M.D., Guill, K.E., Doebley, J. 2010. MADS-box genes in maize: Frequent targets of selection during domestication. Genetics Research. 93:65-75.
MAIZEGDB.ORG, the Maize Genetics Cooperation and the 2500 Mb B73 Genome-Generated Tsunami - (Abstract Only)
(11-Oct-10)
An Integrated Approach to Identify and Deploy Novel Genetic Determinants From Resurrection Plants for Improved Dehydration Tolerance of Crops - (Abstract Only)
Oliver, M.J., Cushman, J.C., Sharp, R.R., Payton, P.R. 2010. An Integrated Approach to Identify and Deploy Novel Genetic Determinants From Resurrection Plants for Improved Dehydration Tolerance of Crops. Meeting Abstract. American Society of Plant Biologists, July 30 - August 4, 2010, Montreal, Canada. 2010 CDROM.
IView: Introgression library visualization and query tool - (Peer Reviewed Journal)
Bottoms, C., Flint Garcia, S.A., McMullen, M.D. 2010. IView: Introgression library visualization and query tool. BMC Bioinformatics. 11(6):S28.
Desiccation sensitivity and tolerance in the moss Physcomitrella patens: assessing limits and damage. - (Peer Reviewed Journal)
Koster, K.L., Balsamo, R.A., Catherine, E., Oliver, M.J. 2010. Desiccation sensitivity and tolerance in the moss Physcomitrella patens: assessing limits and damage. Plant Growth Regulation. 62:293-302.
Genetic Architecture of Maize Kernel Quality in the Nested Association Mapping (NAM) Population - (Abstract Only)
(22-Apr-10)
Genetic Architecture of Maize Kernel Quality in the Nested Association Mapping (NAM) Population - (Abstract Only)
(22-Apr-10)
Chloroplast Genome Sequence of the Moss Tortula ruralis: Gene Content and Structural Arrangement Relative to Other Green Plant Chloroplast Genomes - (Peer Reviewed Journal)
Oliver, M.J., Murdock, A.G., Mishler, B.D., Kuehl, J.V., Boore, J.L., Mandoli, D.F., Everett, K.D., Wolf, P.G., Duffy, A.M., Karol, K.G. 2010. Chloroplast Genome Sequence of the Moss Tortula ruralis: Gene Content and Structural Arrangement Relative to Other Green Plant Chloroplast Genomes. Biomed Central (BMC) Genomics. 11:143.
Using Association Mapping in Teosinte (Zea Mays ssp Parviglumis) to Investigate the Function of Selection-Candidate Genes - (Peer Reviewed Journal)
Weber, A.L., Zhao, Q., McMullen, M.D., Doebley, J. 2009. Using Association Mapping in Teosinte (Zea Mays ssp Parviglumis) to Investigate the Function of Selection-Candidate Genes. PLoS One. 4:e8227.
Dehydration Tolerance in Plants - (Review Article)
Oliver, M.J., Cushman, J.C., Koster, K.L. 2010. Dehydration Tolerance in Plants. Methods in Molecular Biology. p. 3-24.
Genetic Variation at Bx 1 Controls DIMBOA Content in Maize - (Peer Reviewed Journal)
Butron, A., Chen, Y., Rottinghaus, G., McMullen, M.D. 2009. Genetic Variation at Bx 1 Controls DIMBOA Content in Maize. Theoretical and Applied Genetics. 120:721-734.
The Physical and Genetic Framework of the B73 Maize Genome - (Peer Reviewed Journal)
Wei, F., Zhang, J., Zhou, S., He, R., Schaeffer, M.L., Collura, K., Kudrna, D., Faga, B., Wissotski, M., Golser, W., Fulton, L., Courtney, W., Fronick, C., Fulton, B., Coe, E., Schwartz, D.C., Ware, D., Clifton, S., Wilson, R.K., Wing, R.A. 2009. The Physical and Genetic Framework of the B73 Maize Genome. PLoS Genetics. 5(11):e1000715.
Transgenic Biofuel Feedstocks and Strategies for Biocontainment - (Review Article)
Kausch, A.P., Hague, J., Oliver, M.J., Yi, L., Daniell, H., Mascia, P., Watrud, L.S., Stewart, N. 2010. Transgenic Biofuel Feedstocks and Strategies for Biocontainment. Biofuels. 1(1):163-176.
Understanding Vegetative Desiccation Tolerance using Integrated Functional Genomics Approaches within a Comparative Evolutionary Framework - (Book / Chapter)
(21-Sep-09)
Heterosis is Prevalent for Multiple Traits in Diverse Maize Germplasm - (Peer Reviewed Journal)
Flint Garcia, S.A., Buckler IV, E.S., Tiffin, P., Ersoz, E., Springer, N.M. 2009. Heterosis is Prevalent for Multiple Traits in Diverse Maize Germplasm. PLoS One. 4:e7433.
Exploiting the Genomes of Dehydration/Desiccation-Tolerant Species in Crop Improvement Strategies - (Abstract Only)
Oliver, M.J., Cushman, J.C., Sharp, R.E., Payton, P.R. 2009. Exploiting the Genomes of Dehydration/Desiccation-Tolerant Species in Crop Improvement Strategies. Interdrought III Meeting, October 11-16, 2009, Shanghai, China. 2009 CDROM.
Gene Flow in Genetically Engineered Perennial Grasses: Lessons for Modification of Dedicated Bioenergy Crops - (Book / Chapter)
(11-Aug-09)
Genetic Modification in Dedicated Bioenergy Crops and Strategies for Gene Confinement - (Book / Chapter)
(11-Aug-09)
An Integrated Strategy to Identify Key Genes in Almond Adventitious Shoot Regeneration - (Peer Reviewed Journal)
Santos, M., Oliver, M.J., Sanchez, A., Payton, P.R., Gomes, J.P., Miguel, C., Oliviera, M.M. 2009. An Integrated Strategy to Identify Key Genes in Almond Adventitious Shoot Regeneration. Journal of Experimental Botany. 60(14):4519-4173.
Wide Variability in Seed Characteristics, Kernel Quality, and Zein Profiles Among Diverse Maize Inbreds, Landraces, and Teosinte - (Peer Reviewed Journal)
Flint Garcia, S.A., Bodnar, A., Scott, M.P. 2009. Wide Variability in Seed Characteristics, Kernel Quality, and Zein Profiles Among Diverse Maize Inbreds, Landraces, and Teosinte. Theoretical and Applied Genetics. 119:1129-1142.
Large Scale Q-PCR Reveals Maize Transcription Factors that are Regulated Under Water Deficit in a Tissue-Specific Manner - (Abstract Only)
Cho, I., Srivastava, G., Joshi, T., Xu, D., Hearne, L.B., Sharp, R.E., Oliver, M.J. 2009. Large Scale Q-PCR Reveals Maize Transcription Factors that are Regulated Under Water Deficit in a Tissue-Specific Manner. American Society of Plant Biologists Annual Meeting, July 18-22, 2009, Honolulu, Hawaii. 2009 CDROM.
Genetic Properties of the Maize Nested Association Mapping Population - (Peer Reviewed Journal)
Mcmullen, M.D., Kresovich, S., Sanchez-Villeda, H., Bradbury, P., Li, H., Sun, Q., Flint Garcia, S.A., Thornsberry, J., Acharya, C., Bottoms, C., Brown, P., Browne, C.J., Eller, M.S., Guill, K.E., Harjes, C., Kroon, D., Lepak, N.K., Mitchell, S., Peterson, B.E., Pressoir, G., Romero, S.M., Oropeza Rosas, M., Salvo, S.A., Yates, H., Hanson, M., Jones, E., Smith, S., Glaubitz, J., Goodman, M., Ware, D., Holland, J.B., Buckler Iv, E.S. 2009. Genetic Properties of the Maize Nested Association Mapping Population. Science. 325:737-740.
A Comparative Metabolite Profile Assessment of Dehydration Tolerance Strategies in Two Species of Sporobolus: The Desiccation Tolerant S. Stapfianus and the Desiccation Sensitive S. Pyrimidalis - (Abstract Only)
Oliver, M.J., Alexander, D. 2009. A Comparative Metabolite Profile Assessment of Dehydration Tolerance Strategies in Two Species of Sporobolus: The Desiccation Tolerant S. Stapfianus and the Desiccation Sensitive S. Pyrimidalis. American Society of Plant Biologists Annual Meeting, July 18-22, 2009, Honolulu, Hawaii. 2009 CDROM.
A Combined Subtractive Suppression Hybridization and Expression Profiling Strategy to Identify Novel Desiccation Response Transcripts From Tortula ruralis Gametophytes - (Peer Reviewed Journal)
Oliver, M.J., Hudgeons, J., Dowd, S.E., Payton, P.R. 2009. A Combined Subtractive Suppression Hybridization and Expression Profiling Strategy to Identify Novel Desiccation Response Transcripts From Tortula ruralis Gametophytes. Physiologia Plantarum. 136:437-460.
Seed Targeted Gene Confinement Strategies - (Abstract Only)
Oliver, M.J. 2009. Seed Targeted Gene Confinement Strategies. Society for In Vitro Biology Proceedings (abstract). Society for In Vitro Biology Annual Meeting, June 9-12, 2009, Charleston, North Carolina. 2009 CDROM.
Development of Single Nucleotide Polymorphism (SNP) Markers for Use in Commercial Maize (Zea Mays L.) Germplasm - (Peer Reviewed Journal)
Jones, E., Chu, W., Ayele, M., Ho, J., Bruggeman, E., Yourstone, K., Rafalski, A., Smith, O.S., McMullen, M.D., Bezawada, C., Warren, J., Babayew, J., Basu, S., Smith, S. 2009. Development of Single Nucleotide Polymorphism (SNP) Markers for Use in Commercial Maize (Zea Mays L.) Germplasm. Molecular Breeding. 24:165-176.
Conventional Screening Overlooks Resistance Sources: Rootworm Damage of Diverse Inbred Lines and Their B73 Hybrids is Unrelated - (Peer Reviewed Journal)
Flint Garcia, S.A., Dashiell, K.E., Prischmann, D.A., Bohn, M.O., Hibbard, B.E. 2009. Conventional Screening Overlooks Resistance Sources: Rootworm Damage of Diverse Inbred Lines and Their B73 Hybrids is Unrelated. Journal of Economic Entomology. 102:1317-1324.
Construction of a Rye BAC Library for Utilization in Physical Mapping of an Aluminum Tolerance Gene Complex - (Other)
(03-Mar-09)
A Visualization and Query Tool for Introgression Libraries - (Abstract Only)
Bottoms, C., Flint Garcia, S.A., Mcmullen, M.D. 2009. A Visualization and Query Tool for Introgression Libraries. Maize Genetics Conference Abstracts. p.184.
Length of Selection Around Candidate Genes for Artificial Selection During Domestication and Crop Improvement in Maize - (Abstract Only)
Kim, J., Mcmullen, M.D. 2009. Length of Selection Around Candidate Genes for Artificial Selection During Domestication and Crop Improvement in Maize. Maize Genetics Conference Abstracts. p.119.
Putting Physcomitrella Patens on the Tree of Life: The Evolution and Ecology of Mosses - (Book / Chapter)
Mishler, B., Oliver, M.J. 2009. Putting Physcomitrella Patens on the Tree of Life: The Evolution and Ecology of Mosses. In: Knight, C., Perroud, P-F., Cove, D., editors. The Moss Physcomitrella Patens. Oxford, England. Wiley-Blackwell. p. 1-15.
Large scale q-PCR reveals maize transcription factors that are regulated under water deficit in a tissue-specific manner - (Abstract Only)
Cho, I., Trupti, J., Gyan, S., Dong, X., Leonard, H., Oliver, M.J. 2008. Large scale q-PCR reveals maize transcription factors that are regulated under water deficit in a tissue-specific manner. Gordon Research Conference: Salt and Water Stressing Plants, September 7-12, 2008, Big Sky, Montana. 2008 CDROM.
Big Data: The Future of Biocuration - (Other)
Howe, D., Costanzo, M., Fey, P., Gojobori, T., Hannick, L., Hide, W., Hill, D.P., Kania, R., Schaeffer, M.L., St. Pierre, S., Twigger, S., White, O., Rhee, S.Y. 2008. Big Data: The Future of Biocuration. Nature. 455(7209):47-50.
Responses of the Lichen Photobiont Trebouxia erici to Desiccation and Rehydration (II) Proteomics - (Abstract Only)
Gasulla, F., Jain, R., Thelan, J., Barrano, E., Oliver, M.J. 2008. Responses of the Lichen Photobiont Trebouxia erici to Desiccation and Rehydration (II) Proteomics. International Association for Lichenology/American Bryological and Lichenological Society Joint Meeting, July 13-19, 2008, Monterey Peninsula, California. 2008 CDROM.
Proteome analysis of leaves of the desiccation-tolerant grass, sporobolus stapfianus, in response to desiccation - (Abstract Only)
Oliver, M.J., Jain, R., Agrawal, G., Gasulla, F., Thelan, J. 2008. Proteome analysis of leaves of the desiccation-tolerant grass, sporobolus stapfianus, in response to desiccation. American Society of Plant Biologists Annual Meeting, June 26 - July 2, 2008, Merida, Mexico. 2008 CDROM.
MaizeGDB as Chromosome Walking Companion - (Abstract Only)
Schaeffer, M.L., Campbell, D.A., Harper, E.C., Seigfried, T.E., Sen, T.Z., Lawrence, C.J. 2008. MaizeGDB as Chromosome Walking Companion. American Society of Plant Biologists Annual Meeting. p.106.
DNA Align Editor: DNA Alignment Editor Tool - (Peer Reviewed Journal)
Sanchez-Villeda, H., Schroeder, S., Flint Garcia, S.A., Guill, K.E., Yamasaki, M., McMullen, M.D. 2008. DNA align editor: DNA alignment editor tool. Bioinformatics. 9:154.
Maize Genetics and Genomics Database - (Research Notes)
Schaeffer, M.L., Campbell, D.A., Seigfried, T.E., Harper, E.C., Sen, T.Z., Lawrence, C.J. 2008. Maize Genetics and Genomics Database. Maize Genetics Cooperation Newsletter. 82:82-83.
Empirical analysis of selection screens for domestication and improvement loci in maize by extended DNA sequencing - (Peer Reviewed Journal)
Yamasaki, M., Schroeder, S., Sanchez-Villeda, H., Gaut, B., Mcmullen, M.D. 2008. Empirical analysis of selection screens for domestication and improvement loci in maize by extended DNA sequencing. The Plant Genome. 1(1):33-43.
Genetics and Biochemistry of Insect Resistance in Maize - (Book / Chapter)
McMullen, M.D., Frey, M., Degenhardt, J. 2009. Genetics and Biochemistry of Insect Resistance in Maize. In: Bennetzen, J., Hake, S. editors. The Maize Handbook. New York, NY. Springer. p. 271-289.
Linkage mapping of domestication loci in a large maize-teosinte backcross resource - (Peer Reviewed Journal)
Briggs, W., Mcmullen, M.D., Gaut, B.S., Doebley, J. 2007. Linkage mapping of domestication loci in a large maize-teosinte backcross resource. Genetics. 177:1915-1928.
Searching and Mining Visually Observed Phenotypes of Maize Mutants - (Peer Reviewed Journal)
Shyu, C., Harnsomburana, J., Green, J., Barb, A.S., Kazic, T., Schaeffer, M.L., Coe, E.J. 2007. Searching and Mining Visually Observed Phenotypes of Maize Mutants. Journal of Bioinformatics and Computational Biology. 5(6):1193-1213.
Genomic screening for artificial selection during domestication and improvement in maize - (Review Article)
Yamasaki, M., Wright, S., Mcmullen, M.D. 2007. Genomic screening for artificial selection during domestication and improvement in maize. Annals Of Botany. 100:967-973.
Physical and Genetic Structure of the Maize Genome Reflects its Complex Evolutionary History - (Peer Reviewed Journal)
Wei, F., Coe Jr, E., Nelson, W., Engler, F., Bharti, A.K., Butler, E., Kim, H., Goicoechea, J., Lee, S., Fuks, G., Sanchez-Villeda, H., Schroeder, S., Fang, Z., Mcmullen, M.D., Davis, G., Bowers, J.E., Paterson, A.H., Schaeffer, M.L., Gardiner, J., Cone, K., Messing, J., Soderlund, C., Wing, R.A. 2007. Physical and Genetic Structure of the Maize Genome Reflects its Complex Evolutionary History. PLoS Genetics. 3(7):e123.
Biochemical and Molecular Mechanisms of Desiccation Tolerance in Bryophytes - (Book / Chapter)
Oliver, M.J. 2008. Biochemical and Molecular Mechanisms of Desiccation Tolerance in Bryophytes. In: Goffinet, B., Shaw, J., editors. Bryophyte Biology. 2nd Edition. New York, NY: Cambridge University Press. p. 269-298.
Lessons on dehydration tolerance from desiccation tolerant plants - (Book / Chapter)
Oliver, M.J. 2007. Lessons on dehydration tolerance from desiccation tolerant plants. In: Jenks, M., Wood, A., editors. Plant Desiccation Tolerance. Ames, IA:Wiley-Blackwell Publishing. p. 11-50.
Impage Analysis for Mapping Immeasurable Phenotypes in Maize     Reprint Icon - (Peer Reviewed Journal)
Shyu, C., Green, J.M., Lun, D.P., Kazic, T., Schaeffer, M.L., Coe, E. 2007. Impage Analysis for Mapping Immeasurable Phenotypes in Maize. IEEE Signal Processing Magazine. 24(3):116-119.
Maize Genetics and Genomics Database - (Other)
Schaeffer, M.L., Harper, E.C., Seigfried, T.E., Campbell, D.A., Lawrence, C.J. 2007. Maize Genetics and Genomics Database. Maize Genetics Cooperation Newsletter. 81:68-70.
Desiccation tolerance in Bryophytes: relevance to the evolution of desiccation tolerance in Land Plants - (Abstract Only)
(04-Apr-07)
Quantitative Trait Loci for Maysin Synthesis in Maize (Zea mays L.) Lines Selected for High Silk Maysin Content - (Peer Reviewed Journal)
Meyer, J., Snook, M., Houchins, K.E., Rector, B.G., Widstrom, N.W., Mcmullen, M.D. 2006. Quantitative Trait Loci for Maysin Synthesis in Maize (Zea mays L.) Lines Selected for High Silk Maysin Content. Journal of Theoretical and Applied Genetics. 115:119-128.
Generational Differences in Response to Desiccation Stress in the Desert Moss Tortula Inermis - (Peer Reviewed Journal)
Stark, L.R., Oliver, M.J., Mishler, B.D., Mcletchie, D. 2006. Generational differences in response to desiccation stress in the desert moss Tortula inermis. Annals Of Botany. 99(1):53-60.
Last Modified: 9/10/2014
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