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United States Department of Agriculture

Agricultural Research Service

Research Project: DEVELOPMENT AND APPLICATION OF MOLECULAR PHYLOGENETICS OF FUNGI TO ENHANCE FOOD SAFETY AND FOOD SECURITY Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Identification and characterization of Fusarium mexicanum causing mango malformation disease in México - (Proceedings)
Rodriquez-Alvarado, G., Fernandez-Pavia, S., Otero-Colina, G., Aoki, T., Ploetz, R.C., O Donnell, K., Maymon, M., Freeman, S. 2013. Identification and characterization of Fusarium mexicanum causing mango malformation disease in México. IX International Mango Symposium. 992:377-384.
Systematics, phylogeny and trichothecene mycotoxin potential of fusarium head blight cereal pathogens - (Abstract Only)
Aoki, T., Ward, T.J., Kistler, H.C., Gale, L.R., O Donnell, K. 2011. Systematics, phylogeny and trichothecene mycotoxin potential of fusarium head blight cereal pathogens. Meeting Abstract.
Speciation despite globally overlapping distributions in Penicillium chrysogenum: the population genetics of Alexander Fleming’s lucky fungus - (Peer Reviewed Journal)
Henk, D.A., Eagle, C.E., Brown, K., Van Den Berg, M.A., Dyer, P.S., Peterson, S.W., Fisher, M.C. 2011. Speciation despite globally overlapping distributions in Penicillium chrysogenum: the population genetics of Alexander Fleming’s lucky fungus. Molecular Ecology. 20(20):4288-4301.
Comparison of inoculation methods for characterizing relative aggressiveness of two soybean sudden-death syndrome pathogens, Fusarium virguliforme and F. tucumaniae - (Peer Reviewed Journal)
Scandiani, M.M., Ruberti, D.S., Giorda, L.M., Pioli, R., Luque, A., Bottai, H., Leiva, M., Ivancovich, J.J., Aoki, T., O Donnell, K. 2011. Comparison of inoculation methods for characterizing relative aggressiveness of two soybean sudden-death syndrome pathogens, Fusarium virguliforme and F. tucumaniae. Tropical Plant Pathology. 36(3):133-140.
Recognition of Yeast Species from Gene Sequence Comparisons - (Review Article)
Kurtzman, C.P. 2011. Recognition of yeast species from gene sequence comparisons. The Open Applied Informatics Journal. 5:20-29.
Chronic rhino-orbital mucormycosis caused by Mucor irregularis (Rhizomucor variabilis) in India - (Peer Reviewed Journal)
Hemashettar, B.M., Patil, R.N., O Donnell, K., Padhye, A.A. 2011. Chronic rhino-orbital mucormycosis caused by Mucor irregularis (Rhizomucor variabilis) in India. Journal of Clinical Microbiology. 49(6):2372-2375.
Fusarium falciforme vertebral abscess and osteomyelitis: case report and molecular classification - (Peer Reviewed Journal)
Edupuganti, S., Rouphael, N., Mehta, A., Eaton, M., Heller, J., Bressler, A., Brandt, M., O Donnell, K. 2011. Fusarium falciforme vertebral abscess and osteomyelitis: case report and molecular classification. Journal of Clinical Microbiology. 49(6):2350-2353.
Fusarium sibiricum sp. nov, a novel type A trichothecene-producing Fusarium from northern Asia closely related to F. sporotrichioides and F. langsethiae - (Peer Reviewed Journal)
Yli-Mattila, T., Ward, T.J., O Donnell, K., Proctor, R., Burkin, A., Kononenko, G., Gavrilova, O., Aoki, T., McCormick, S.P., Gagkaeva, T. 2011. Fusarium sibiricum sp. nov, a novel type A trichothecene-producing Fusarium from northern Asia closely related to F. sporotrichioides and F. langsethiae. International Journal of Food Microbiology. 147(1):58-68.
A novel Fusarium species causes a canker disease of the critically endangered conifer, Torreya taxifolia - (Peer Reviewed Journal)
Smith, J.A., O Donnell, K., Mount, L.L., Shin, K., Peacock, K., Trulock, A., Spector, T., Determann, R. 2011. A novel Fusarium species causes a canker disease of the critically endangered conifer, Torreya taxifolia. Plant Disease. 95(6):633-639.
A subset of the newly discovered Northland population of Fusarium graminearum from the U.S. does not produce the B-type trichothecenes DON, 15ADON, 3ADON or NIV - (Abstract Only)
Gale, L.R., Ward, T.J., Kistler, H.C. 2010. A subset of the newly discovered Northland population of Fusarium graminearum from the U.S. does not produce the B-type trichothecenes DON, 15ADON, 3ADON or NIV. Meeting Abstract.
Phylogeny of the ascomycetous yeasts and the renaming of Pichia anomala to Wickerhamomyces anomalus - (Review Article)
Kurtzman, C.P. 2011. Phylogeny of the ascomycetous yeasts and the renaming of Pichia anomala to Wickerhamomyces anomalus. Antonie Van Leeuwenhoek. 99(1):13-23.
First Report of Sexual Reproduction by the Soybean Sudden Death Syndrome Pathogen Fusarium tucumaniae in Nature - (Peer Reviewed Journal)
Scandiani, M.M., Aoki, T., Luque, A.G., Carmona, M.A., O Donnell, K. 2010. First report of sexual reproduction by the soybean SDS pathogen Fusarium tucumaniae in nature. Plant Disease. 94(12):1411-1416.
Multi-Locus Analysis of a Citreoviridin-Producing Isolate Previously Identified as Penicillium NRRL 13013 - (Abstract Only)
Peterson, S.W. 2010. Multi-Locus Analysis of a Citreoviridin-Producing Isolate Previously Identified as Penicillium NRRL 13013. Meeting Abstract.
A Multilocus Genealogical Concordance Approach to Species Delimitation within the Fusarium graminearum Species Complex of Cereal Head Blight Pathogens - (Abstract Only)
O Donnell, K., Ward, T.J., Rooney, A.P., Kistler, H.C., Gale, L.R., Aoki, T., Geiser, D.M., Nicholson, P., Sarver, B.A. 2010. A Multilocus Genealogical Concordance Approach to Species Delimitation within the Fusarium graminearum Species Complex of Cereal Head Blight Pathogens. International Congress of Mycology Proceedings and Abstracts.
An Internet-Accessible DNA Sequence Database for Identifying Fusaria from Human and Animal Infections - (Peer Reviewed Journal)
O Donnell, K., Sutton, D.A., Rinaldi, M.G., Sarver, B.J., Balajee, S., Schroers, H., Summerbell, R.C., Robert, V.G., Crous, P.W., Zhang, N., Aoki, T., Jung, K., Park, J., Lee, Y., Kang, S., Park, B., Geiser, D.M. 2010. An internet-accessible DNA sequence database for identifying Fusaria from human and animal infections. Journal of Clinical Microbiology. 48(10):3708-3718.
Barcoding the Yeasts – Which Genes? - (Abstract Only)
Kurtzman, C.P. 2010. Barcoding the Yeasts – Which Genes?. Meeting Abstract.
Fusarium-Id V.2.0: a DNA Sequence Database for Identification and Characterization of Fusarium - (Abstract Only)
Geiser, D.M., Park, B., O Donnell, K., Kang, S. 2011. FUSARIUM-ID v.2.0: A DNA Sequence Database for Identification and Characterization of Fusarium. Meeting Abstract.
Identification and Characterization of a Novel Etilogical Agent of Mango Malformation Disease in Mexico, Fusarium mexicanum sp. nov.     Reprint Icon - (Peer Reviewed Journal)
Otero-Colina, G., Rodriguez-Alvarado, G., Fernandez-Pavia, S., Maymon, M., Ploetz, R.C., Aoki, T., O Donnell, K., Freeman, S. 2010. Identification and characterization of a novel etilogical agent of mango malformation disease in Mexico, Fusarium mexicanum sp. nov. Phytopathology. 100(11):1176-1184.
A multigene molecular phylogenetic assessment of true morels (Morchella) in turkey - (Peer Reviewed Journal)
Taskin, H., Buyukalaca, S., Dogan, H.H., Rehner, S.A., O Donnell, K. 2010. A multigene molecular phylogenetic assessment of true morels (Morchella) in turkey. Fungal Genetics and Biology. 47(8):672-682.
Identification and Characterization of a Unique Fusarium sp. nov. ex Mangifera indica L. Causing Mango Malformation Disease in México - (Abstract Only)
Rodriguez-Alvarado, G., Fernandez-Pavia, S., Otero-Colina, G., Maymon, M., Ploetz, R.C., Aoki, T., O Donnell, K., Freeman, S. 2010. Identification and Characterization of a Unique Fusarium sp. nov. ex Mangifera indica L. Causing Mango Malformation Disease in México. Meeting Abstract.
Systematics of Methanol Assimilating Yeasts and Neighboring Taxa from Multigene Sequence Analysis and the Proposal of Peterozyma gen. nov., a New Member of the Saccharomycetales - (Peer Reviewed Journal)
Kurtzman, C.P., Robnett, C.J. 2010. Systematics of Methanol Assimilating Yeasts and Neighboring Taxa from Multigene Sequence Analysis and the Proposal of Peterozyma gen. nov., a New Member of the Saccharomycetales. Federation Of European Microbiological Societies Yeast Research. 10(3):353-361.
Saccharomyces Fungemia Associated with Esophageal Disease Identified by D1/D2 Ribosomal RNA Gene Sequence - (Abstract Only)
Cheema, A., Farrell, J., Kurtzman, C.P. 2011. Saccharomyces Fungemia Associated with Esophageal Disease Identified by D1/D2 Ribosomal RNA Gene Sequence. Meeting Abstract.
Systematics of Wickerhamomyces (Pichia) anomalus and its Relatives - (Abstract Only)
Kurtzman, C.P. 2010. Systematics of Wickerhamomyces (Pichia) anomalus and its Relatives. Meeting Abstract. p. 939-954.
Multilocus Phylogenetics Show High Levels of Endemic Fusaria Inhabiting Sardinian Soils (Tyrrhenian Islands) - (Peer Reviewed Journal)
Balmas, V., Migheli, Q., Scherm, B., Garau, P., O Donnell, K., Ceccherelli, G., Kang, S., Geiser, D.M. 2010. Multilocus Phylogenetics Show High Levels of Endemic Fusaria Inhabiting Sardinian Soils (Tyrrhenian Islands). Mycologia. 102(4):803-812.
Molecular Phylogenetic Diversity of Dermatologic and Other Human Pathogenic Fusaria from Hospitals in Northern Italy - (Peer Reviewed Journal)
Migheli, Q., Balmas, V., Harak, H., Sanna, S., Scherm, B., Aoki, T., O Donnell, K. 2010. Molecular Phylogenetic Diversity of Dermatologic and Other Human Pathogenic Fusaria from Hospitals in Northern Italy. Journal of Clinical Microbiology. 48(4):1076-1084.
ARS Culture Collection - (Abstract Only)
Kurtzman, C.P. 2010. ARS Culture Collection. Meeting Abstract.
The Genus Hamigera, Six New Species and Multilocus DNA Sequence Based Phylogeny     Reprint Icon - (Peer Reviewed Journal)
Peterson, S.W., Jurjevic, Z., Bills, G.F., Stchigel, A.M., Vega, F.E. 2010. The Genus Hamigera, Six New Species and Multilocus DNA Sequence Based Phylogeny. Mycologia. 102(4):847-864.
Methods for isolation, phenotypic characterization and maintenance of yeasts - (Book / Chapter)
Kurtzman, C.P., Fell, J.W., Boekhout, T., Robert, V. 2011. Methods for isolation, phenotypic characterization and maintenance of yeasts. In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 1, 5th edition. New York, NY: Elsevier. p. 87-110.
Discussion of teleomorphic and anamorphic Ascomycetous yeasts and yeast-like taxa - (Book / Chapter)
Kurtzman, C.P. 2011. Discussion of teleomorphic and anamorphic Ascomycetous yeasts and yeast-like taxa. In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 293-307.
Lachancea Kurtzman (2003) - (Book / Chapter)
Lachance, M.-A., Kurtzman, C.P. 2011. Lachancea Kurtzman (2003). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 511-519.
Saccharomycopsis Schionning (1903) - (Book / Chapter)
Kurtzman, C.P., Smith, M.Th. 2011. Saccharomycopsis Schionning (1903). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 751-763.
Gene sequence analyses and other DNA-based methods for yeast species recognition - (Book / Chapter)
Kurtzman, C.P., Fell, J.W., Boekhout, T. 2011. Gene sequence analyses and other DNA-based methods for yeast species recognition. In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 1, 5th edition. New York, NY: Elsevier. p. 137-144.
Biogeography of Trichothecene Chemotypes, and the Origins of North American 3ADON Populations - (Abstract Only)
Ward, T.J. 2009. Biogeography of Trichothecene Chemotypes, and the Origins of North American 3ADON Populations. Meeting Abstract.
Molecular Identification and Databases in Fusarium - (Abstract Only)
Geiser, D.M., Kang, S., O Donnell, K. 2009. Molecular Identification and Databases in Fusarium. Meeting Abstract.
Soybean Sudden Death Syndrome Species Diversity within North and South America Revealed by Multilocus Genotyping - (Peer Reviewed Journal)
O Donnell, K., Sink, S.L., Scandiani, M.M., Luque, A.M., Colletto, A., Biasoli, M., Lenzi, L., Salas, G., Gonzalez, V., Ploper, L.D., Formento, N., Pioli, R.N., Aoki, T., Yang, X.B., Brice, A.J. 2010. Soybean Sudden Death Syndrome Species Diversity within North and South America Revealed by Multilocus Genotyping. Phytopathology. 100(1):58-71.
A Novel Multi-Locus Sequence Typing Scheme Reveals High Genetic Diversity of Human Pathogenic Members of the Fusarium incarnatum-F. equiseti and F. chlamydosporum Species Complexes within the U. S. - (Peer Reviewed Journal)
O Donnell, K., Sutton, D.A., Rinaldi, M.G., Gueidan, C., Crous, P.W., Geiser, D.M. 2010. A Novel Multi-Locus Sequence Typing Scheme Reveals High Genetic Diversity of Human Pathogenic Members of the Fusarium incarnatum-F. equiseti and F. chlamydosporum Species Complexes within the U. S. Journal of Clinical Microbiology. 47(12):3851-3861.
Ogataea Y. Yamada, K. Maeda & Mikata (1994) - (Book / Chapter)
Kurtzman, C.P. 2011. Ogataea Y. Yamada, K. Maeda & Mikata (1994). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 645-671.
A Two-locus DNA Sequence Database for Typing Plant and Human Pathogens Within the Fusarium oxysporum Species Complex - (Peer Reviewed Journal)
O Donnell, K., Gueidan, C., Sink, S.L., Johnston, P.R., Crous, P., Glenn, A.E., Riley, R.T., Zitomer, N.C., Colyer, P., Waalwijk, C., Van Der Lee, T., Moretti, A., Kang, S., Kim, H., Geiser, D.M., Juba, J., Baayen, R.P., Cromey, M.G., Bithel, S., Sutton, D.A., Skovgaard, K., Ploetz, R., Kistler, H.C., Elliott, M., Davis, M., Sarver, B.A. 2009. A Two-locus DNA Sequence Database for Typing Plant and Human Pathogens Within the Fusarium oxysporum Species Complex. Fungal Genetics and Biology. 46(12):936-948.
Fusarium oxysporum f. sp. palmarum, a Novel Forma Specialis Causing a Lethal Disease of Syagrus romanzoffiana and Washingtonia robusta in Florida - (Peer Reviewed Journal)
Elliott, M.L., Des Jardin, E.A., O Donnell, K., Geiser, D.M., Harrison, N.A., Broschat, T.K. 2010. Fusarium oxysporum f. sp. palmarum, a Novel Forma Specialis Causing a Lethal Disease of Syagrus romanzoffiana and Washingtonia robusta in Florida. Plant Disease. 94(1):31-38.
Mycoflora of Dried Edible Beans, Phaseolus vulgaris, from the Northern Plains of the United States and its Potential for Ochratoxigenesis - (Abstract Only)
Peterson, S.W. 2009. Mycoflora of Dried Edible Beans, Phaseolus vulgaris, from the Northern Plains of the United States and its Potential for Ochratoxigenesis. Meeting Abstract.
Phylogenetic analysis of ascomycete yeasts that form coenzyme Q-9 and the proposal of the new genera Babjeviella, Meyerozyma, Millerozyma, Priceomyces and Scheffersomyces - (Peer Reviewed Journal)
Kurtzman, C.P., Suzuki, M. 2010. Phylogenetic analysis of ascomycete yeasts that form coenzyme Q-9 and the proposal of the new genera Babjeviella, Meyerozyma, Millerozyma, Priceomyces and Scheffersomyces. Mycoscience. 51(1):2-14.
Torulaspora Lindner (1904) - (Book / Chapter)
Kurtzman, C.P. 2011. Torulaspora Lindner (1904). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 867-874.
Naumovozyma Kurtzman (2008) - (Book / Chapter)
Vaughan-Martini, A., Lachance, M., Kurtzman, C.P. 2011. Naumovozyma Kurtzman (2008). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 641-643.
Wickerhamiella van der Walt (1973) - (Book / Chapter)
Lachance, M., Kurtzman, C.P. 2011. Wickerhamiella van der Walt (1973). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 891-897.
Molecular identification of Emericella echinulata as a cause of Cerebral Aspergillosis in a patient following small bowel and liver transplantation - (Abstract Only)
Iwen, P.C., Peterson, S.W., Florescu, D.F., Kalil, A.C., Mccomb, R.D., Noel, R.K., Sigler, L. 2009. Molecular identification of Emericella echinulata as a cause of Cerebral Aspergillosis in a patient following small bowel and liver transplantation. Meeting Abstract.
A Novel Asian Clade Within the Fusarium graminearum Species Complex Includes a Newly Discovered Cereal Head Blight Pathogen from the Far East of Russia - (Peer Reviewed Journal)
Yli-Mattila, T., Gagkaeva, T., Ward, T.J., Aoki, T., Kistler, H.C., O Donnell, K. 2009. A Novel Asian Clade Within the Fusarium graminearum Species Complex Includes a Newly Discovered Cereal Head Blight Pathogen from the Far East of Russia. Mycologia. 101(6):841-852.
Kazachstania Zubkova (1971) - (Book / Chapter)
Vaughan-Martini, A., Lachance, M.-A., Kurtzman, C.P. 2011. Kazachstania Zubkova (1971). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 439-470.
Meyerozyma Kurtzman & M. Suzuki (2010) - (Book / Chapter)
Kurtzman, C.P. 2011. Meyerozyma Kurtzman & M. Suzuki (2010). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 621-624.
Nakazawaea Y. Yamada, Maeda & Mikata (1994) - (Book / Chapter)
Kurtzman, C.P. 2011. Nakazawaea Y. Yamada, Maeda & Mikata (1994). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 637-639.
Komagataella Y. Yamada, Matsuda, Maeda & Mikata (1995) - (Book / Chapter)
Kurtzman, C.P. 2011. Komagataella Y. Yamada, Matsuda, Maeda & Mikata (1995). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 491-495.
Cyberinfrastructure for Fusarium (CiF) - (Abstract Only)
Kang, S., Park, J., Park, B., Blair, J.E., O Donnell, K., Ward, T.J., Jung, K., Lee, Y., Geiser, D.M. 2009. Cyberinfrastructure for Fusarium (CiF). Meeting Abstract.
A novel Asian clade within the Fusarium graminearum species complex includes a newly discovered cereal head blight pathogen from the Far East of Russia - (Abstract Only)
Yli-Mattila, T., Gagkaeva, T., Ward, T.J., Aoki, T., Kistler, H.C., O Donnell, K. 2009. A novel Asian clade within the Fusarium graminearum species complex includes a newly discovered cereal head blight pathogen from the Far East of Russia. Meeting Abstract.
Protomyces Unger (1833) - (Book / Chapter)
Kurtzman, C.P. 2011. Protomyces Unger (1833). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 725-731.
Yarrowia van der Walt & von Arx (1980) - (Book / Chapter)
Kurtzman, C.P. 2011. Yarrowia van der Walt & von Arx (1980). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 927-929.
Wickerhamomyces Kurtzman, Robnett & Basehoar-Powers (2008) - (Book / Chapter)
Kurtzman, C.P. 2011. Wickerhamomyces Kurtzman, Robnett & Basehoar-Powers (2008). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 899-917.
Kregervanrija Kurtzman (2006) - (Book / Chapter)
Kurtzman, C.P. 2011. Kregervanrija Kurtzman (2006). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 497-501.
Pichia E. C. Hansen (1904) - (Book / Chapter)
Kurtzman, C.P. 2011. Pichia E.C. Hansen (1904). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 685-707.
Barnettozyma Kurtzman, Robnett & Basehoar-Powers (2008) - (Book / Chapter)
Kurtzman, C.P. 2011. Barnettozyma Kurtzman, Robnett & Basehoar-Powers (2008). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 333-339.
Multilocus Genotyping and Molecular Phylogenetics Resolve a Novel Head Blight Pathogen within the Fusarium graminearum Species Complex from Ethiopia - (Peer Reviewed Journal)
O Donnell, K., Ward, T.J., Aberra, D., Kistler, H.C., Aoki, T., Orwig, N.G., Kimura, M., Bjornstad, A., Klemsdal, S.S. 2008. Multilocus Genotyping and Molecular Phylogenetics Resolve a Novel Head Blight Pathogen within the Fusarium graminearum Species Complex from Ethiopia. Fungal Genetics and Biology. 45(11):1514-1522.
A novel species within the Fusarium graminearum complex from Ethiopia detected by a multilocus genotyping assay and molecular phylogenetics - (Abstract Only)
O Donnell, K., Ward, T.J., Aberra, D., Aoki, T., Kistler, H.C., Bjornstad, A., Klemsdal, S.S. 2008. A novel species within the Fusarium graminearum complex from Ethiopia detected by a multilocus genotyping assay and molecular phylogenetics. Meeting Abstract.
A two-locus DNA sequence database for identifying host-specific pathogens and phylogenetic diversity within the Fusarium oxysporum species complex - (Abstract Only)
O Donnell, K., Johnston, P., Crous, P., Gueidan, C., Colyer, P., Glenn, A.E., Riley, R.T., Zitomer, N.C., Waalwijk, C., Geiser, D., Kang, S., Juba, J., Sutton, D.A., Ploetz, P., Elliot, M., Kistler, H.C., Davis, M., Sink, S.L., Sarver, B. 2008. A two-locus DNA sequence database for identifying host-specific pathogens and phylogenetic diversity within the Fusarium oxysporum species complex. Meeting Abstract.
Molecular phylogenetic diversity, multilocus haplotype nomenclature, and in vitro antifungal resistance within the Fusarium solani species complex - (Abstract Only)
O Donnell, K., Sutton, D.A., Fothergill, A., Mccarthy, D., Rinaldi, M.G., Brandt, M.E., Zhang, N., Geiser, D.M. 2008. Molecular phylogenetic diversity, multilocus haplotype nomenclature, and in vitro antifungal resistance within the Fusarium solani species complex. Meeting Abstract.
Morphological and molecular variation among species of the Fusarium dimerum species group - (Abstract Only)
Schroers, H., Lamprecht, S.C., O Donnell, K., Kammeyer, P.L., Johnson, S., Sutton, D.A., Rinaldi, M.G., Summerbell, R.C. 2008. Morphological and molecular variation among species of the Fusarium dimerum species group. Meeting Abstract.
Molecular phylogeny of Fusarium inferred from partial RNA polymerase II gene sequences - (Abstract Only)
O Donnell, K. 2008. Molecular phylogeny of Fusarium inferred from partial RNA polymerase II gene sequences. Meeting Abstract.
Fusarium identification databases, present and future - (Abstract Only)
Geiser, D.M., Kang, S., O Donnell, K. 2008. Fusarium identification databases, present and future. Meeting Abstract.
Trichothecene chemotype composition of Fusarium graminearum and related species in Finland and Russia - (Abstract Only)
O Donnell, K., Ward, T.J. 2008. Trichothecene chemotype composition of Fusarium graminearum and related species in Finland and Russia. Meeting Abstract.
Molecular ecology of Sardinian fusaria - (Abstract Only)
Balmas, V., Migheli, Q., Garau, P., Kang, S., Geiser, D.M., O Donnell, K. 2008. Molecular ecology of Sardinian fusaria. Meeting Abstract.
Penicillium parvulum and Penicillium georgiense sp. nov. Isolated from the Conidial Heads of Aspergillus Species - (Peer Reviewed Journal)
Peterson, S.W., Horn, B.W. 2009. Penicillium parvulum and Penicillium georgiense sp. nov. Isolated from the Conidial Heads of Aspergillus Species. Mycologia. 101(1):71-83.
Lindnera Kurtzman, Robnett & Basehoar-Powers (2008) - (Book / Chapter)
Kurtzman, C.P. 2011. Lindnera Kurtzman, Robnett & Basehoar-Powers (2008). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 521-543.
Citeromyces Santa Maria (1957) - (Book / Chapter)
Kurtzman, C.P. 2011. Citeromyces Santa Maria (1957). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 345-348.
Pachysolen Boidin & Adzet (1957) - (Book / Chapter)
Kurtzman, C.P. 2011. Pachysolen Boidin & Adzet (1957). In: Kurtzman, C.P., Fell, J.W., Boekhout, T., editors. The Yeasts, a Taxonomic Study. Volume 2, 5th edition. New York, NY: Elsevier. p. 673-675.
Molecular phylogeny and taxonomy of the genus Hamigera - (Abstract Only)
Peterson, S.W. 2008. Molecular phylogeny and taxonomy of the genus Hamigera. Meeting Abstract.
Taxonomy and Phylogeny of the Fusarium dimerum Species Group - (Peer Reviewed Journal)
Schroers, H., Lamprecht, S.C., O Donnell, K., Kammeyer, P.L., Johnson, S., Sutton, D.A., Rinaldi, M.G., Summerbell, R.C. 2009. Taxonomy and Phylogeny of the Fusarium dimerum Species Group. Mycologia. 101(1):44-70.
Phylogenetic Relationships Among Species of Pichia, Issatchenkia and Williopsis Determined from Multigene Sequence Analysis, and the Proposal of Barnettozyma gen. nov., Lindnera gen. nov. and Wickerhamomyces gen. nov. - (Peer Reviewed Journal)
Kurtzman, C.P., Robnett, C.J., Basehoar Powers, E.A. 2008. Phylogenetic Relationships Among Species of Pichia, Issatchenkia and Williopsis Determined from Multigene Sequence Analysis, and the Proposal of Barnettozyma gen. nov., Lindnera gen. nov. and Wickerhamomyces gen. nov. Federation of European Microbiological Societies Yeast Research. 8(6):939-954.
Production of white colonies on CHROMagar Candida BD by species in the C. glabrata clade, and other species with overlapping phenotypic traits. - (Abstract Only)
Bishop, J.A., Chase, N., Lee, R., Kurtzman, C.P., Merz, W.G. 2008. Production of white colonies on CHROMagar Candida BD by species in the C. glabrata clade, and other species with overlapping phenotypic traits.. Meeting Abstract.
Molecular Phylogenetic Diversity, Multilocus Haplotype Nomenclature, and In Vitro Antifungal Resistance within the Fusarium solani Species Complex - (Peer Reviewed Journal)
O Donnell, K., Sutton, D.A., Fothergill, A., Mccarthy, D., Rinaldi, M.G., Brandt, M., Zhang, N., Geiser, D.M. 2008. Molecular Phylogenetic Diversity, Multilocus Haplotype Nomenclature, and In Vitro Antifungal Resistance within the Fusarium solani Species Complex. Journal of Clinical Microbiology. 46(8):2477-2490.
Reclassification of ascomycetous yeasts from gene sequence analyses - (Abstract Only)
Kurtzman, C.P. 2008. Reclassification of ascomycetous yeasts from gene sequence analyses. Meeting Abstract.
Comparative sequence analyses of multiple loci reveal rare Aspergillus species in transplant recipients (transnet study) - (Abstract Only)
Kano, R., Perrone, G., Peterson, S.W., Baddley, J.W., Marr, K.A., Alexander, B., Andes, D., Kontoyiannis, D., Pappas, P.G., Balajee, S. 2008. Comparative sequence analyses of multiple loci reveal rare Aspergillus species in transplant recipients (transnet study). Meeting Abstract.
Phylogenetic analysis of Aspergillus species using DNA sequences from four loci - (Peer Reviewed Journal)
Peterson, S.W. 2008. Phylogenetic analysis of Aspergillus species using DNA sequences from four loci. Mycologia. 100(2):205-226.
Multilocus Sequence Identification of Penicillium Species in Cork Bark During the Manufacture of Wine Bottle Stoppers - (Peer Reviewed Journal)
Sera, R., Peterson, S.W., Venancio, A. 2008. Multilocus Sequence Identification of Penicillium Species in Cork Bark During the Manufacture of Wine Bottle Stoppers. Research in Microbiology. 159(3):178-186.
Phylogeny and subgeneric taxonomy of Aspergillus - (Book / Chapter)
Peterson, S.W., Varga, J., Frisvad, J.C., Samson, R.A. 2008. Phylogeny and subgeneric taxonomy of Aspergillus. In: Varga, J., Samson, R.A., editors. Wageningen Academic Publishers: Wageningen, The Netherlands. p. 33-56.
Fusarium and Candida albicans biofilms on soft contact lenses: model development, influence of lens type and susceptibility to lens care solutions - (Peer Reviewed Journal)
Imamura, Y., Chandra, J., Mukherjee, P.K., Lattif, A., Szczotka-Flynn, L.B., Pearlman, E., Lass, J.H., O Donnell, K., Ghannoum, M.A. 2007. Fusarium and Candida albicans biofilms on soft contact lenses: model development, influence of lens type and susceptibility to lens care solutions. Antimicrobial Agents and Chemotherapy. 52:171-182.
An adaptive evolutionary shift in Fusarium head blight pathogen populations is driving the rapid spread of more toxigenic Fusarium graminerarum in North America - (Peer Reviewed Journal)
Ward, T.J., Clear, R.M., Rooney, A.P., O Donnell, K., Gaba, D., Patrick, S., Starkey, D.E., Gilbert, J., Geiser, D.M., Nowicki, T.W. 2008. An adaptive evolutionary shift in Fusarium head blight pathogen populations is driving the rapid spread of more toxigenic Fusarium graminerarum in North America. Fungal Genetics and Biology. 45(4):473-484.
Recommendation for the conservation of the name Streptomyces scabies. Request for an opinion. - (Peer Reviewed Journal)
Lambert, D.H., Loria, R., Labeda, D.P., Saddler, G. 2007. Recommendation for the conservation of the name Streptomyces scabies. Request for an opinion. International Journal of Systematic and Evolutionary Microbiology. 57:2447-2448.
Phylogenetic diversity and microsphere array-based genotyping of human pathogenic Fusaria, including isolates from the multistate contact lens-associated U.S. keratitis outbreaks of 2005 and 2006 - (Peer Reviewed Journal)
O Donnell, K., Sarver, B., Brandt, M., Chang, D.C., Nobel-Wang, J., Park, B.J., Sutton, D., Benjamin, L., Lindsley, M., Padhye, A., Geiser, D.M., Ward, T.J. 2007. Phylogenetic diversity and microsphere array-based genotyping of human pathogenic Fusaria, including isolates from the multistate contact lens-associated U.S. keratitis outbreaks of 2005 and 2006. Journal of Clinical Microbiology. 45(7):2235-2248.
Investigation of an outbreak of Fusarium foot and fruit rot of pumpkins within the United States - (Peer Reviewed Journal)
Elmer, W.H., Covert, S.F., O Donnell, K. 2007. Investigation of an outbreak of Fusarium foot and fruit rot of pumpkins within the United States. Plant Disease. 92:1142-1146.
Sexual reproduction in the soybean sudden death syndrome pathogen Fusarium tucumaniae - (Peer Reviewed Journal)
Covert, S.F., Aoki, T., O Donnell, K., Starkey, D.E., Holliday, A., Geiser, D.M., Cheung, F., Town, C., Strom, A.L., Juba, A., Scandiani, M., Yang, X.B. 2007. Sexual reproduction in the soybean sudden death syndrome pathogen Fusarium tucumaniae. Fungal Genetics and Biology. 44(8):799-807.
Eleven new species of Sugiyamaella and Candida from forest habitats - (Peer Reviewed Journal)
Kurtzman, C.P. 2007. Eleven new species of Sugiyamaella and Candida from forest habitats. Federation Of European Microbiological Societies Yeast Research. 7(6):1046-1063.
Penicillium Astrolabium and Penicillium Neocrassum, Two New Species Isolated from Grapes and Their Phylogenetic Placement in the P. Olsonii and P. Brevicompactum Clade - (Peer Reviewed Journal)
Serra, R., Peterson, S.W. 2007. Penicillium astrolabium and Penicillium neocrassum, two new species isolated from grapes and their phylogenetic placement in the P. olsonii and P. brevicompactum clade. Mycologia. 99(1):78-87.
Reconstructing the Early Evolution of Fungi Using a Six-Gene Phylogeny - (Peer Reviewed Journal)
James, T.Y., Kauff, F., Schoch, C., Matheny, B., Hofstetter, V., Cox, C.J., Celio, G., Guiedan, C., Fraker, E., Miadlikowska, J., Lumbsh, T., Rauhut, A., Reeb, V., Arnold, A., Amtoft, A., Stajich, J.E., Hosaka, K., Sung, G., Johnson, D., O'Rourke, B., Crockett, M., Binder, M., Curtis, J.M., Slot, J.C., Wang, Z., Wilson, A.W., Schueller, A., Longcore, J.E., O Donnell, K., Mozley-Standridge, S., Porter, D., Letcher, P.M., Powell, M.J., Taylor, J.W., White, M.M., Griffith, G.W., Davies, D.R., Humber, R.A., Morton, J.B., Sugiyama, J., Rossman, A.Y., Rogers, J.D., Pfister, D.H., Hewitt, D., Hansen, K., Hambleton, S., Shoemaker, R.A., Kohlmeyer, J., Volkmann-Kohlmeyer, B., Spotts, R.A., Serdani, M., Crous, P.W., Hughes, K.W., Matsuura, K., Langer, E., Langer, G., Untereiner, W.A., Lucking, R., Budel, B., Geiser, D.M., Aptroot, D.M., Diederich, P., Schmitt, I., Schultz, M., Yahr, R., Hibbett, D.S., Lutzoni, F., Mclaughlin, D.J., Spatafora, J.W., Vilgalys, R. 2006. Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature. 443:818-822.
Phylogeny of the Zygomycota Based on Nuclear Ribosomal Sequence Data - (Peer Reviewed Journal)
White, M.M., James, T.Y., O Donnell, K., Cafaro, M.J., Tanabe, Y., Sugiyama, J. 2006. Phylogeny of the Zygomycota based on nuclear ribosomal sequence data. Mycologia. 98:872-884.
An Outbreak of Fusarium Keratitis Associated with Use of a New Contact Lens Solution - (Peer Reviewed Journal)
Chang, D.C., Grant, G.B., O Donnell, K., Wannemuehler, K., Noble-Wang, J., Rao, C.Y., Jacobson, L.M., Crowell, C.S., Sneed, R., Lewis, F.M., Kainer, M.A., Genese, C.A., Alfonso, E.C., Jones, D.B., Srinivasan, A., Fridkin, S.K., Park, B.J. 2006. An outbreak of Fusarium keratitis associated with use of a new contact lens solution. Journal of the American Medical Association. 296:953-963.
Rapid Identfication of Ascomycetous Yeasts from Clinical Specimens by a Molecular-Based Flow Cytometry Method and Comparision with Identifications from Phenotypic Assays - (Peer Reviewed Journal)
Page, B.T., Shields, C.E., Merz, W.G., Kurtzman, C.P. 2006. Rapid identfication of ascomycetous yeasts from clinical specimens by a molecular-based flow cytometry method and comparision with identifications from phenotypic assays. Journal of Clinical Microbiology. 44(9):3167-3171.
Multigene Phylogenetic Analysis of the Trichomonascus, Wickerhamiella and Zygoascus Yeast Clades, and the Proposal of Sugiyamaella Gen. Nov. and Fourteen New Species Combinations - (Peer Reviewed Journal)
Kurtzman, C.P., Robnett, C.J. 2007. Multigene phylogenetic analysis of the Trichomonascus, Wickerhamiella and Zygoascus yeast clades, and the proposal of Sugiyamaella gen. nov. and fourteen new species combinations. Federation Of European Microbiological Societies Yeast Research. 7:141-151.
Catheter-Related Fungemia Due to Candida Thermophila - (Peer Reviewed Journal)
Bar-Meir, M., Sutton, D.A., Wickes, B., Kurtzman, C.P., Goldman, S., Zheng, X. 2006. Catheter-related fungemia due to Candida thermophila. Journal of Clinical Microbiology. 44(8):3035-3036.
Elisa Analysis for Fusarium in Barley: Development of Methodology and Field Assessment - (Peer Reviewed Journal)
Hill, N.S., Schwarz, P., Dahleen, L.S., Neate, S., Horsley, R., Glenn, A.E., O Donnell, K. 2006. Elisa analysis for Fusarium in barley: Development of methodology and field assessment. Crop Science. 46:2636-2642.
Update: Fusarium Keratitis - United States, 2005 - 2006 - (Government Publication)
Barry, M.A., Pendarvis, J., Mshar, P., Ritger, K., Dixon, P., Alfonso, E., Leguen, F., Signs, K., Fine, A., Nivin, B., Anand, M., Smith, P., Salehi, E., Demarco, K., Sison, E., Genese, C., Robertson, C., Tan, C., Bresnitz, E., Kainer, M.A., Thayer, N.L., Jones, D.B., O Donnell, K., Park, B.J., Wannemuehler, K., Jacobson, L., Crowell, C., Gerhart, M., Brandt, M., Fridkin, S., Srinivasan, A., Arduino, M., Noble-Wang, J., Chang, D., Grant, G., Burwell, L., Rao, C., Carpenter, L.R., Greshman, M., Huang, A., Lewis, F.M., Mirchandani, G., Sosa, L. 2006. Update: Fusarium Keratitis - United States, 2005 - 2006. MMWR Dispatch, vol. 55, May 19, 2006.
Plant Pathogen Culture Collections: It Takes a Village to Preserve These Resources Vital to the Advancement of Agricultural Security and Plant Pathology - (Review Article)
Kang, S., Blair, J.E., Geiser, D.M., Khang, C., Park, S., Gahegan, M., O Donnell, K., Luster, D.G., Kim, S.H., Ivors, K.L., Lee, Y., Lee, Y., Grunwald, N.J., Martin, F.N., Coffey, M.D., Veeraraghavan, N., Makalowska, I. 2006. Plant pathogen culture collections: It takes a village to preserve these resources vital to the advancement of agricultural security and plant pathology. Phytopathology. 96:920-925.
Fusarium Keratitis - Multiple States, 2006 - (Government Publication)
Barry, M.A., Pendarvis, J., Rosenbreg, J., Chen, S., Mshar, P., Leguen, F., Robertson, C., Genese, C., Tan, C., Bresnitz, E., Johnson, G., Anand, M., Smith, P., Kainer, M.A., Saviola, J., Eydelman, M., Schultz, D., O Donnell, K., Park, B.J., Srinivasan, A., Wannemuehler, K., Arduino, M., Noble-Wang, J., Jacobson, L., Brandt, M., Fridkin, S., Chang, D., Burwell, L.A., Carpenter, L.R., Lewis, F.T., Schaffzin, J.K., Sosa, L. 2006. Fusarium Keratitis - Multiple States, 2006. Morbidity and Mortality Weekly Report, Dispatch Vol. 55, April 10, 2006.
Last Modified: 11/27/2014
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