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United States Department of Agriculture

Agricultural Research Service

Research Project: FATE AND TRANSPORT OF MANURE-BORNE PATHOGENIC MICROORGANISMS Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Effect of biofilm in irrigation pipes on the microbial quality of irrigation water - (Peer Reviewed Journal)
Pachepsky, Y.A., Morrow, J., Guber, A.K., Rowland, R.A., Shelton, D.R. 2012. Effect of biofilm in irrigation pipes on the microbial quality of irrigation water. Letters in Applied Microbiology. 54(3):217-224.
Prediction of contamination potential of groundwater arsenic in Cambodia, Laos, and Thailand using artificial neural network     Reprint Icon - (Peer Reviewed Journal)
Cho, K., Sthiannopkao, S., Pachepsky, Y.A., Kim, K., Kim, J. 2011. Prediction of contamination potential of groundwater arsenic in Cambodia, Laos, and Thailand using artificial neural network. Water Research. 45(17):5535-5544.
Uncertainty in modeling of fecal coliform overland transport associated with manure application in Maryland - (Peer Reviewed Journal)
Guber, A.K., Pachepsky, Y.A., Yakirevich, A., Shelton, D.R., Sadeghi, A.M., Goodrich, D.C., Unkrich, C.L. 2011. Uncertainty in modeling of fecal coliform overland transport associated with manure application in Maryland. Hydrological Processes. 25:2393-2404.
Survival of E. coli O157:H12 in creek sediments after inoculation and re-inoculation - (Peer Reviewed Journal)
Pachepsky, Y.A., Garzio-Hadzick, A., Shelton, D.R., Hadzick, Z., Hull, R. 2011. Survival of E. coli O157:H12 in creek sediments after inoculation and re-inoculation. International Journal of Environment and Pollution. 46:234-245.
Geometric and Hydrodynamic Characteristics of Three-dimensional Saturated Prefractal Porous Media Determined with Lattice Boltzmann Modeling - (Peer Reviewed Journal)
Kim, J., Heechul, C., Perfect, E., Pachepsky, Y.A., Sukop, M. 2011. Geometric and Hydrodynamic Characteristics of Three-dimensional Saturated Prefractal Porous Media Determined with Lattice Boltzmann Modeling. Transport in Porous Media. 90:831-846.
Stwir, a Microorganism Transport with Infiltration and Runoff Add-on Module for the Kineros2 Runoff and Erosion Model: Documentation and User Manual - (Other)
Guber, A.K., Pachepsky, Y.A., Yakirevich, A., Shelton, D.R., Sadeghi, A.M., Goodrich, D.C., Unkrich, C.L. 2010. STWIR, a microorganism transport with infiltration and runoff add-on module for the KINEROS2 runoff and erosion model: documentation and user manual. United States Department of Agriculture Technical Bulletin.
Enterohemorrhagic E. coli (EHEC): “stealth” agents adept at avoiding detection - (Abstract Only)
Shelton, D.R. 2010. Enterohemorrhagic E. coli (EHEC): “stealth” agents adept at avoiding detection.[abstract].
Using pedotransfer functions to estimate the van Genuchten-Mualem soil hydraulic properties: A review - (Peer Reviewed Journal)
Vereecken, H., Weynants, M., Javaux, M., Pachepsky, Y.A., Schaap, M., Van Genuchten, M. 2010. Using pedotransfer functions to estimate the van Genuchten-Mualem soil hydraulic properties: A review. Vadose Zone Journal. 9:795-820.
Reconstructing missing daily precipitation data using regression trees and artificial neural networks - (Peer Reviewed Journal)
Kim, J., Pachepsky, Y.A. 2010. Reconstructing missing daily precipitation data using regression trees and artificial neural networks. Journal of Hydrology. 394:305-314.
Release of Escherichia coli from the bottom sediment in a small first-order creek: Experiment and Modeling - (Peer Reviewed Journal)
Kyung Hwa, C., Pachepsky, Y.A., Joon Ha, K., Guber, A.K., Shelton, D.R., Rowland, R.A. 2010. Release of Escherichia coli from the bottom sediment in a small first-order creek: Experiment and Modeling. Journal of Hydrology. 391(3-4):322-332.
Module STWIR for KINEROS-based Simulations of the Field-scale Manure-Borne Bacteria Transport with Runoff - (Abstract Only)
Guber, A.K., Pachepsky, Y.A., Yakirevich, A., Shelton, D.R., Sadeghi, A.M., Rowland, R.A., Goodrich, D.C., Unkrich, C.L. 2010. Module STWIR for KINEROS-based Simulations of the Field-scale Manure-Borne Bacteria Transport with Runoff. Meeting Abstract. ASABE Pub No. 711p0710cd.
Estimation of KINEROS parameters with Pedotransfer Functions and Associated Uncertainty in Modeling of Fecal Coliform Overland Transport - (Abstract Only)
Guber, A.K., Pachepsky, Y.A., Yakirevich, A.M., Shelton, D.R., Goodrich, D.C., Unkrich, C.L. 2010. Estimation of KINEROS parameters with Pedotransfer Functions and Associated Uncertainty in Modeling of Fecal Coliform Overland Transport. [abstract]. ASA-CSSA-SSSA Annual Meeting. 214-4.
Prevalence, characterization and clonal analysis of Escherichia coli O157 non-H7 serotypes that carry eae alleles - (Peer Reviewed Journal)
Feng, P., Keys, C., Lacher, D., Monday, S., Shelton, D.R., Rozand, C., Rivas, M., Whittam, T. 2010. Prevalence, characterization and clonal analysis of Escherichia coli O157 non-H7 serotypes that carry eae alleles. FEMS Microbiology Letters. 308(1):62-67.
Overland transport of manure-borne pathogen and indicator organisms: modeling and uncertainty assessment with the KINEROS-STWIR model - (Abstract Only)
Guber, A.K., Pachepsky, Y.A., Shelton, D.R., Goodrich, D.C., Unkrich, C.L. 2010. Overland transport of manure-borne pathogen and indicator organisms: modeling and uncertainty assessment with the KINEROS-STWIR model. [abstract]. Joint Federal Interagency Hydrologic Modeling Conference. p.360.
Numerical simulations of water flow and tracer transport in soils at the USDA-ARS Beltsville OPE3 field site - (Abstract Only)
Pan, F., Guber, A.K., Pachepsky, Y.A., Gish, T.J., Nicholson, T.J., Cady, R.R. 2010. Numerical simulations of water flow and tracer transport in soils at the USDA-ARS Beltsville OPE3 field site. BARC Poster Day, .
Effect of streambed bacteria release on E. Coli concentrations: Monitoring and Modeling with the Modified Soil and Water Assessment Tool (SWAT) - (Peer Reviewed Journal)
Kim, J., Pachepsky, Y.A., Shelton, D.R., Coppock, C.R. 2010. Effect of streambed bacteria release on E. Coli concentrations: Monitoring and Modeling with the Modified Soil and Water Assessment Tool (SWAT). Ecological Modeling. 221:1592:1604.
Survival of manure-borne E. coli in streambed sediment: effects of temperature and sediment properties     Reprint Icon - (Peer Reviewed Journal)
Garzio-Hadzick, A.M., Shelton, D.R., Hill, R., Pachepsky, Y.A., Guber, A.K., Rowland, R.A. 2010. Survival of manure-borne E. coli in streambed sediment: effects of temperature and sediment properties. Water Research. 44:2753-2762
Modeling Fate and Transport of Manure-borne Pathogens - (Abstract Only)
(27-Jan-10)
Average concentration of soluble salts in leached soils inferred from the convective-dispersive equation     Reprint Icon - (Peer Reviewed Journal)
Mikayilsoy, F., Pachepsky, Y.A. 2010. Average concentration of soluble salts in leached soils inferred from the convective-dispersive equation. Irrigation Science. 28(5):431-434.
Sediment-Associated Bacteria Release and Settling In SWAT bacteria routing: Model and SWAT add-on manual - (Popular Publication)
Kim, J., Pachepsky, Y.A., Shelton, D.R. 2010. Sediment-Associated Bacteria Release and Settling In SWAT bacteria routing: Model and SWAT add-on manual. United States Department of Agriculture Technical Bulletin. Available: http://www.ars.usda.gov/Research/docs.htm?docid=21090.
Escherichia coli and fecal coliforms in freshwater and estuarine sediments - (Review Article)
Pachepsky, Y.A., Shelton, D.R. 2011. Escherichia coli and fecal coliforms in freshwater and estuarine sediments. Critical Reviews in Environmental Science Technology. 41(12):1067-1110.
Fecal Coliform Interaction with Soil Aggregates: Effect of Water Content and Bovine Manure Application - (Peer Reviewed Journal)
Guber, A.K., Pachepsky, Y.A., Shelton, D.R., Yu, O. 2009. Fecal Coliform Interaction with Soil Aggregates: Effect of Water Content and Bovine Manure Application. Soil Science. 174(10):543-548.
Fractal Modeling and Scaling in Natural Systems - Editorial - (Literature Review)
Martin, M.A., Pachepsky, Y.A., Perfect, E., Guber, A.K. 2009. Fractal Modeling and Scaling in Natural Systems - Ecological Complexity. 6(3):219-220.
Biofilm morphology as related to the porous media clogging     Reprint Icon - (Peer Reviewed Journal)
Kim, J., Choi, H., Pachepsky, Y.A. 2009. Biofilm morphology as related to the porous media clogging. Water Research. http://dx.doi.org/10.1016j.watres.2009.05.049.
Survival of E. coli delivered with manure to stream sediment - (Abstract Only)
Garzio-Hadzick, A.M., Shelton, D.R., Pachepsky, Y.A., Hill, R.L., Guber, A.K., Rowland, R.A., Hadzick, Z.Z. 2009. Survival of E. coli delivered with manure to stream sediment. ASA-CSSA-SSSA Annual Meeting Abstracts. http://a-c-s.confex.com/crops/2009am/webprogram/Paper52279.html.
Model of fecal coliform overland transport from agricultural lands fertilized with animal manure - (Abstract Only)
Guber, A.K., Yakirevich, A., Shelton, D.R., Sadeghi, A.M., Goodrich, D.C., Unkrich, C.L., Rowland, R.A., Pachepsky, Y.A. 2009. Model of fecal coliform overland transport from agricultural lands fertilized with animal manure. ASA-CSSA-SSSA Annual Meeting Abstracts. http://a-c-s.confex.com/crops/2009am/webprogram/Paper52269.html
Event-based Modeling of Fecal Coliform Concentrations in Runoff from Manured Fields - (Abstract Only)
(03-May-09)
Sensitive detection of E. coli O157:H7 - (Abstract Only)
Zhu, P., Shelton, D.R., Adams, D., Li, S., Tang, C., Amstutz, P.T. Sensitive detection of E. coli O157:H7. Meeting Abstract.
Evaluation of enterohemorrhagic Escherichia coli (EHEC) growth media against six EHEC strains - (Abstract Only)
Adams, D., Zhu, P., Shelton, D.R., Stefansson, S., Li, S., Amstutz, P., Tang, C. 2009. Evaluation of enterohemorrhagic Escherichia coli (EHEC) growth media against six EHEC strains. Meeting Abstract.
Enhancing the USDA-ARS Soil and Water Assessment Tool (SWAT) with the in-stream bacteria fate and transport module including sediment bacteria resuspension and settling - (Abstract Only)
Kim, J., Pachepsky, Y.A., Shelton, D.R., Coppock, C.R. 2009. Enhancing the USDA-ARS Soil and Water Assessment Tool (SWAT) with the in-stream bacteria fate and transport module including sediment bacteria resuspension and settling. BARC Poster Day, April 15, 2009.
Survival of E. coli in stream sediment as affected by temperature, texture, and organic matter - (Abstract Only)
Garzio-Hadzick, A.M., Shelton, D.R., Hill, R.L., Guber, A.K., Rowland, R.A., Hadzick, Z.Z., Pachepsky, Y.A. 2009. Survival of E. coli in stream sediment as affected by temperature, texture, and organic matter. BARC Poster Day April 15, 2009.
E. coli resuspension during an artificial high-flow event in a small first-order creek - (Proceedings)
Pachepsky, Y.A., Guber, A.K., Shelton, D.R., Hill, R.L. 2009. E. coli resuspension during an artificial high-flow event in a small first-order creek. European Geosciences Union General Assembly Proceedings. April 19-24, 2009, Vienna, Austria. EGU2009-9880.
Reconstructing missing daily precipitation data using regression trees and artificial neural networks - (Abstract Only)
(05-Feb-09)
Including the resuspension of the streambed E. coli in the Soil and Water Assessment Tool (SWAT) - (Abstract Only)
(05-Feb-09)
Uncertainty Evaluation of Coliform Bacteria Removal from Vegetated Filter Strip under Overland Flow Condition     Reprint Icon - (Peer Reviewed Journal)
Guber, A.K., Yakirevich, A.M., Sadeghi, A.M., Pachepsky, Y.A., Shelton, D.R. 2009. Uncertainty Evaluation of Coliform Bacteria Removal from Vegetated Filter Strip under Overland Flow Condition. Journal of Environmental Quality. 38:1636-1644.
Size Distributions of Manure Particles Released Concurrently with E. coli Under Simulated Rainfall     Reprint Icon - (Peer Reviewed Journal)
Pachepsky, Y.A., Guber, A.K., Shelton, D.R., Mccarty, G.W. 2009. Size Distributions of Manure Particles Released Concurrently with E. coli Under Simulated Rainfall. Journal of Environmental Management. 90:1365-1369.
Strain-dependent variations in attachment of E. coli to soil particles of different sizes - (Peer Reviewed Journal)
Pachepsky, Y.A., Karns, J.S., Yu, O., Shelton, D.R., Guber, A.K., Van Kessel, J.S. 2008. Strain-dependent variations in attachment of E. coli to soil particles of different sizes. International Agrophysics. 22:61-66.
Loss of Bioactive Phosphorus and Enteric Bacteria in Runoff from Dairy Manure Applied to Sod     Reprint Icon - (Peer Reviewed Journal)
Dao, T.H., Guber, A.K., Sadeghi, A.M., Karns, J.S., Van Kessel, J.S., Shelton, D.R., Pachepsky, Y.A., Mccarty, G.W. 2008. Loss of Bioactive Phosphorus and Enteric Bacteria in Runoff from Dairy Manure Applied to Sod. Soil Science. 173:511-521.
Structure and function in soil hydrology - (Abstract Only)
Pachepsky, Y.A., Lilly, A., Gish, T.J. 2008. Structure and function in soil hydrology. European Geosciences Union General Assembly 2008, Vienna, Austria, April 13-18, 2008.
Overland transport of manure-borne pathogen indicator organisms: observations and modeling - (Abstract Only)
Pachepsky, Y.A., Guber, A.K., Shelton, D.R., Sadeghi, A.M. 2008. Overland transport of manure-borne pathogen indicator organisms: observations and modeling. European Geoscienes union General Assembly 2008, Vienna, Austria, April 13-18, 2008.
Pore space statistics from the X-ray CT of large undisturbed soil columns - (Abstract Only)
Martin, M.A., Tuller, M., Guber, A.K., Guttierez-Garcia, C., San Jose Martinez, F., Pachepsky, Y.A., Caniego, J. 2007. Pore space statistics from the X-ray CT of large undisturbed soil columns [abstract]. Fall Meeting of the American Geophyscial Union, December 10-14, 2007, San Francisco, CA. H53G-1707.
Probabilistic Evaluation of the Vegetated Filter Strip Efficiency With Respect to Pathogen Removal From Runoff - (Abstract Only)
Pachepsky, Y.A., Guber, A.K., Sadeghi, A.M., Shelton, D.R. 2007. Probabilistic Evaluation of the Vegetated Filter Strip Efficiency With Respect to Pathogen Removal From Runoff. Fall Meeting of the American Geophysical Union, December 10-14, 2007, San Francisco, CA.
Observing and Simulating Macropore Flow with Computed Tomography and Lattice Boltzmann Methods - (Abstract Only)
Schaap, M., Tuller, M., Guber, A.K., Pachepsky, Y.A. 2007. Observing and Simulating Macropore Flow with Computed Tomography and Lattice Boltzmann Methods [abstract]. International Hydropedology Conference, Penn State, University Park, PA, July 28-31, 2008. Abstract 184-7. 2007 CDROM.
Interaction of fecal coliforms with soil aggregates - (Abstract Only)
Guber, A.K., Pachepsky, Y.A., Shelton, D.R., Yu, O. 2007. Interaction of fecal coliforms with soil aggregates. ASA-CSSA-SSSA International Annual Meetings, November 4-8, 2007, New Orleans, LA. Abstract 292-22. 2007 CDROM
Modeling E. Coli Retention in Vegetated Filter Strips - (Abstract Only)
Sadeghi, A.M., Guber, A.K., Pachepsky, Y.A., Nemes, A., Shelton, D.R. 2007. Modeling E. Coli Retention in Vegetated Filter Strips [abstract]. ASA-CSSA-SSSA International Annual Meetings, November 4-8, 2007, New Orleans, LA. Abstract 245-10. 2007 CDROM.
Strain-dependent variations in attachment of E. coli to soil particles of different sizes - (Abstract Only)
Yu, O., Pachepsky, Y.A., Karns, J.S., Shelton, D.R., Guber, A.K. 2007. Strain-dependent variations in attachment of E. coli to soil particles of different sizes. ASA-CSSA-SSSA International Annual Meeting, November 4-8, 2007, New Orleans, LA. Abstract 292-24. 2007 CDROM.
Comparison of Plot Scale Average Gravimetric Soil Water Contents with Data from Calibrated Multisensor Capacitance Probes - (Proceedings)
Rowland, R.A., Guber, A.K., Pachepsky, Y.A., Gish, T.J. 2007. Comparison of plot scale average gravimetric soil water contents with data from calibrated multisensor capacitance probes. Proceedings of The Second International Symposium On Soil Water Measurement Using Capacitance, Impedance and Time Domain Transmission. Beltsville, Maryland, USDA, October 28 - November 02, 2007. Paper 1.6:1-9.
Uncertainty assessment for the vegetated filter strip performance with respect to manure-borne pathogens - (Abstract Only)
Pachepsky, Y.A., Guber, A.K., Sadeghi, A.M., Shelton, D.R. 2007. Uncertainty assessment for the vegetated filter strip performance with respect to manure-borne pathogens. Joint Assembly of the European and American Geophysical Unions. Paper No. B41C-02.
Evaluating uncertainty in E. coli retention in vegetated buffer strips - (Abstract Only)
Guber, A.K., Pachepsky, Y.A., Sadeghi, A.M. 2007. Evaluating uncertainty in E. coli retention in vegetated buffer strips. BARC Poster Day, April 25, 2007.
Effect of Manure on Fecal Coliform Attachment to Soil and Soil Particles of Different Sizes - (Peer Reviewed Journal)
Pachepsky, Y.A., Guber, A.K., Shelton, D.R., Yu, O.T. 2007. Effect of Manure on Fecal Coliform Attachment to Soil and Soil Particles of Different Sizes. Applied and Environmental Microbiology. 73(10):3363-3370.
Evaluating uncertainty in E. coli retention in vegetated buffer strips in locations selected with SWAT simulations - (Proceedings)
Guber, A.K., Pachepsky, Y.A., Sadeghi, A.M. 2007. Evaluating uncertainty in E. coli retention in vegetated buffer strips in locations selected with SWAT simulations. Proceedings of the Symposium on Watershed Management, March 10-14, 2007, San Antonio, Texas. pp.286-293. ASABE Publication 701P0207.
Survival of Escherichia Coli in Cow Pats in Pasture and in Laboratory Conditions - (Peer Reviewed Journal)
Van Kessel, J.S., Pachepsky, Y.A., Shelton, D.R., Karns, J.S. 2007. Survival of Escherichia coli in cow pats in pasture and in laboratory conditions. Journal of Applied Microbiology. 103(4):1122-1127.
Comparison of Release and Transport of Manure-Borne E. Coli and Enterococci under Grass Buffer Conditions - (Peer Reviewed Journal)
Guber, A.K., Karns, J.S., Pachepsky, Y.A., Sadeghi, A.M., Van Kessel, J.S., Dao, T.H. 2007. Comparison of release and transport of manure-borne E. coli and Enterococci under grass buffer conditions. Letters in Applied Microbiology. 44(2):161-167.
Fractional Solute Transport Equation Evaluated with the Miscible Displacement Experimental Data - (Abstract Only)
San Jose Martinez, F., Pachepsky, Y.A. 2006. Fractional solute transport equation evaluated with the miscible displacement experimental data. American Geophysical Union, December 11-15, 2006, San Francisco, CA. 0800h:H21C-1387.
Attachment of Escherichia Coli to Soil Aggregates As Affected by Aggregate Water Content and Presence of Manure Colloids - (Abstract Only)
Guber, A.K., Pachepsky, Y.A., Shelton, D.R., Yu, O.T. 2006. Attachment of escherichia coli to soil aggregates as affected by aggregate water content and presence of manure colloids. American Geophysical Union, December 11-15, 2006, San Francisco, CA. 0800h:H11E-1292.
Using Ensemble Predictions to Simulate Field-Scale Soil Water Time Series with Upscaled and Downscaled Soil Hydraulic Properties - (Abstract Only)
Pachepsky, Y.A., Guber, A.K., Jacques, D., Van Genuchten, M.T., Simunek, J., Nicholson, T.J., Cady, R.E. 2006. Using ensemble predictions to simulate field-scale soil water time series with upscaled and downscaled soil hydraulic properties. American Geophysical Union, December 11-15, 2006, San Francisco, CA. 1340h:H33A-1482.
Model of Aquaspirillum and Arthrobacter transport in soils - (Book / Chapter)
Devin, B.A., Pachepsky, Y.A., Shein, E.V., Polyanskaia, L.M., Shelton, D.R., Guber, A.K. 2006. Model of Aquaspirillum and Arthrobacter transport in soils. Transactions of the Institute of Ecological Soil Science. 20(3):207-218.
Field Data and Preliminary Modeling to Demonstrate Model Abstraction Techniques Using the Ope3 Field Site - (Government Publication)
(24-Aug-06)
Evaluating Uncertainty in E. Coli Retention in Vegetated Buffer Strips in Locations Selected with Swat Simulations - (Abstract Only)
Guber, A.K., Pachepsky, Y.A., Sadeghi, G.J. 2007. Evaluating uncertainty in E. coli retention in vegetated buffer strips in locations selected with swat simulations. Watershed Management Conference Proceedings, March 11-13, 2007, San Antonio, Texas. #9, page 6.
Fractional Advective-Dispersive Equation As a Model of Solute Transport in Porous Media - (Book / Chapter)
San Jose Martinez, F., Pachepsky, Y.A., Rawls, W.J. 2007. Fractional advective-dispersive equation as a model of solute transport in porous media. In: Sabatier, J., Agrawal, O.P., Teneiro, Machado, I.A. - editors. Advances in Fractional Calculus. Berlin, Germany. Springer Verlag. p. 199-219.
Transport and Fate of Manure-Borne Pathogens: Modeling Perspective - (Peer Reviewed Journal)
Pachepsky, Y.A., Sadeghi, A.M., Bradford, S.A., Shelton, D.R., Guber, A.K., Dao, T.H. 2006. Transport and fate of manure-borne pathogens: modeling perspective. Agricultural Water Management. Online-(doi:10.1016/j.agwat.2006.06.0l0.)
Preferential E. Coli Transport in Saturated Soil Columns - (Abstract Only)
Guber, A.K., Pachepsky, Y.A., Shelton, D.R., Van Genuchten, M.T. 2006. Preferential E. coli transport in saturated soil columns. Preferential Flow and Transport Processes in Soil Conference, November 4-9,2006, Monte Verita, Ascona, Switzerland.
Comparing the Fractional and the Classical Solute Transport Equations with Data on Solute Breakthrough in Soil Columns - (Proceedings)
San Jose Martinez, F., Pachepsky, Y.A., Rawls, W.J. 2006. Comparing the fractional and the classical solute transport equations with data on solute breakthrough in soil columns. The Fifth International Conference on Engineering Computational Technology, September 12-15,2006, Las Palmas, Spain. 2006 CDROM.
A Two-Stage Monitoring Procedure for Quantifying Flow in Variably-Saturated Heterogeneous Soils - (Abstract Only)
Guber, A.A., Gish, T.J., Pachepsky, Y.A., Nicholson, T.J., Cady, R.E. 2006. A two-stage monitoring procedure for quantifying flow in variably-saturated heterogeneous soils. American Geophysical Union Joint Assembly, May 23-26, 2006, Baltimore, MD. CD-ROM, Paper No. H43D-04.
Differences in Release and Transport of Manure-Borne E. Coli and Enterococci in Grass Buffer Conditions - (Abstract Only)
Guber, A.A., Karns, J.S., Pachepsky, Y.A., Sadeghi, A.M., Van Kessel, J.S., Dao, T.H. 2006. Differences in release and transport of manure-borne E. coli and Enterococci in grass buffer conditions. ASA-CSSA-SSSA International Meeting, November 12-16, 2006, Indianapolis, Indiana. CD-ROM.
Effect of Manure on Escherichia Coli Attachment to Soil Fractions - (Abstract Only)
Guber, A.A., Pachepsky, Y.A., Shelton, D.R., Yu, O.T. 2006. Effect of manure on Escherichia coli attachment to soil fractions. ASA-CSSA-SSSA International Meeting, November 12-16,2006, Indianapolis, Indiana. CD-ROM.
Runoff Transport of Manure-Borne Fecal Coliforms and Chloride: Field Plot Experiment and Modeling - (Abstract Only)
Guber, A.A., Shelton, D.R., Sadeghi, A.M., Pachepsky, Y.A., Nemes, A., Sefton, K.A. 2006. Runoff transport of manure-borne fecal coliforms and chloride: Field plot experiment and modeling. ASA-CSSA-SSSA International Meeting, November 12-16, 2006, Indianapolis, Indiana. CD-ROM.
Evaluating the Fractional Convective-Dispersive Equation As a Solute Transport Model with Data from Miscible Displacement Experiments - (Abstract Only)
San Jose Martinez, F., Pachepsky, Y.A., Rawls, W.J. 2006. Evaluating the fractional convective-dispersive equation as a solute transport model with data from miscible displacement experiments [abstract]. ASA-CSSA-SSSA International Meeting. 2006 CDROM.
Modeling Manure-Borne Bromide and Fecal Coliform Transport with Runoff and Infiltration at a Hillslope - (Peer Reviewed Journal)
Kouznetsov, M.Y., Roodsari, R., Pachepsky, Y.A., Shelton, D.R., Sadeghi, A.M., Shirmohammadi, A., Starr, J.L. 2006. Modeling manure-borne bromide and fecal coliform transport with runoff and infiltration on a hillsope. Journal of Environmental Management. 84(2007):336-346.
The Limited Entrapment Model to Simulate the Breakthrough of Arthrobacter and Aquaspirillum in Soil Columns - (Peer Reviewed Journal)
Pachepsky, Y.A., Devin, B.A., Polyanskaya, L.M., Shelton, D.R., Shein, E.V., Guber, A.K. 2006. The limited entrapment model to simulate the breakthrough of arthrobacter and aquaspirillum in soil columns. International Agrophysics. 20(3):207-218.
Modeling Pathogen Fate and Transport in Watersheds to Support Tmdls - (Peer Reviewed Journal)
Benham, B.L., Baffaut, C., Zeckoski, R.W., Pachepsky, Y.A., Mankin, K.R., Sadeghi, A.M., Brannan, K.M., Soupir, M.L., Habersac, M.J. 2006. Modeling Pathogen Fate and Transport in Watersheds to Support TMDLs. American Society of Agricultural and Biological Engineers. 49(4):987-1002.
Testing the Fractional Advective-Dispersive Equation for Solute Transport in Soil with Data from Miscible Displacement Experiments - (Abstract Only)
San Jose Martinez, F., Pachepsky, Y.A., Rawls, W.J., Canjego, F. 2006. Testing the fractional advective-dispersive equation for solute transport in soil with data from miscible displacement experiments [abstract]. European Geosciences Union General Assembly. Paper No. EGU-06-A-09992.
Attachment of Manure-Borne Escherichia Coli to Soil - (Abstract Only)
Guber, A.K., Pachepsky, Y.A., Shelton, D.R. 2006. Attachment of manure-borne Escherichia coli to soil. 18th World Congress of Soil Science, Philadelphia, PA. July 9-15, 2006. CD-ROM, Paper No. 139-28.
Information Content and Complexity of Simulated Soil Water Fluxes - (Abstract Only)
Pachepsky, Y.A., Guber, A.K., Jacques, D., Simunek, J., Van Genuchten, M.T., Nicholson, T.J., Cady, R.E. 2006. Information content and complexity of simulated soil water fluxes. 18th World Congress of Soil Science, Philadelphia, PA., July 9-15, 2006 ,CD-ROM, Paper No. 48-12.
Using Ensembles of Pedotransfer Functions for Soil Water Retention in Field-Scale Water Flow Simulations - (Abstract Only)
Guber, A.K., Pachepsky, Y.A., Jacques, D., Van Genuchten, M.T., Rawls, W.J., Nemes, A., Simunek, J., Nicholson, T.J., Cady, R.E. 2006. Using ensembles of pedotransfer functions for soil water retention in field-scale water flow simulations [abstract]. 18th World Congress of Soil Science. Paper No. 119-4.
Fractal Behaviour in Particle-Size Distributions As Influenced by Soil Properties and Determination Method - (Peer Reviewed Journal)
Stanchi, S., Bonifacio, E., Zanini, E., Pachepsky, Y.A. 2006. Fractal behaviour in particle-size distributions as influenced by soil properties and determination method. Soil Science. 171:383-292.
Fractal Geometry Applied to Soil and Related Hierarchical Systems - (Popular Publication)
Pachepsky, Y.A., Perfect, E., Martin, M.A. 2006. Fractal Geometry applied to soil and related Hierarchical Systems. Geoderma. doi:10.1016/j.geodema.20067.03.002.
Parameterization of Pore Structure with Respect to the Contaminant Transport - (Abstract Only)
Pachepsky, Y.A. 2006. Parameterization of pore structure with respect to the contaminant transport. Meeting Abstract. International Workshop “Methodical and theoretical approaches to study hydro- and thermo-physical characteristics of porous media". February 14-14, 2006, Lublin, Poland. p. 16.
Model Abstraction in Hydrologic Modeling - (Proceedings)
Pachepsky, Y.A., Guber, A.K., Van Genuchten, M.T., Nicholson, T.J., Cady, R.E., Simunek, J., Jacques, D., Gish, T.J., Daughtry, C.S. 2006. Model abstraction in hydrologic modeling. Proceedings of Federal Interagency Hydrologic Modeling Conference. Paper No. 8D. 2006 CDROM.
Spatial and Temporal Variability of Fecal Coliform at and Near a Manured Field - (Abstract Only)
Pachepsky, Y.A., Shelton, D.R., Sadeghi, A.M., Gish, T.J., Daughtry, C.S., Guber, A.K., Coppock, C.R. 2005. Spatial and temporal variability of fecal coliform at and near a manured field [abstract]. American Society of Agronomy Annual Meeting. 2005 CDROM.
Model Abstraction Techniques for Soil Water Flow and Transport - (Government Publication)
Pachepsky, Y.A., Guber, A.K., Van Genuchten, M.T., Nicholson, T.J., Cady, R.E., Simunek, J., Schaap, M.G. 2006. Model abstraction techniques for soil water flow and transport. Government Publication/Report-NUREG. http://www.nrc.gov/reading-rm/doc-collections/nuregs/contract/cr6884/.
The Effects of E-Beam Irradiation on Eastern Oysters (Crassostrea Virginica) Experimentally Infected with Cryptosporidium Parvum - (Abstract Only)
Collins, M., Flick, G., Lindsay, D., Fayer, R. 2005. The Effects of E-Beam Irradiation on Eastern Oysters (Crassostrea virginica) Experimentally Infected with Cryptosporidium parvum [abstract]. Institute of Food Technologists Nonthermal Processing Division Meeting, September 2005, Philadelphia, PA.
Predicting the Microbial Contamination of Soils of River Valleys - (Proceedings)
Devin, B.A., Shein, E.V., Pachepsky, Y.A., Shelton, D.R. 2005. Predicting the microbial contamination of soils of river valleys. International Conference on Ecology of River Basins. September 28-30, 2005, Vladimir, Russia. pp.63-65.
Model Abstraction in Hydrologic Modeling - (Abstract Only)
Pachepsky, Y.A., Guber, A.K., Van Genuchten, M.T., Nicholson, T.J., Cady, R.E., Simunek, J., Gish, T.J., Daughtry, C.S., Jackues, D. 2005. Model abstraction in hydrologic modeling [abstract]. Annual Public Meeting of the Interagency Steering Committee on Multimedia Environmental Models. p. 7.
Spatial and Temporal Variability of Fecal Coliforms at and Near a Manured Field - (Abstract Only)
Pachepsky, Y.A., Shelton, D.R., Sadeghi, A.M., Gish, T.J., Daughtry, C.S., Guber, A.K., Coppock, C.R. 2005. Spatial and temporal variability of fecal coliform at and near a manured field [abstract]. 2005 International American Agronomy Society Meeting. 2005 CDROM.
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