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United States Department of Agriculture

Agricultural Research Service

Research Project: IDENTIFICATION AND CHARACTERIZATION OF GENES AFFECTING COOL AND COLD WATER AQUACULTURE PRODUCTION

Location: Cool and Cold Water Aquaculture Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Mapping QTL for spleen size and BCWD resistance in rainbow trout - (Abstract Only)
Vallejo, R.L., Palti, Y., Liu, S., Welch, T.J., Leeds, T.D., Evenhuis, J., Rexroad III, C.E., Wiens, G.D. 2013. Mapping QTL for spleen size and BCWD resistance in rainbow trout. Annual International Plant & Animal Genome Conference. P0508.
Molecular crosstalk between a chemical and a biological stressor and consequences on disease manifestation in rainbow trout - (Peer Reviewed Journal)
(21-Feb-12)
Molecular characterization of the MuRF genes in rainbow trout: potential role in muscle degradation - (Peer Reviewed Journal)
Wang, J., Salem, M., Kenney, P., Rexroad III, C.E., Yao, J. 2011. Molecular characterization of the MuRF genes in rainbow trout: potential role in muscle degradation. Comparative Biochemistry and Physiology. 158(3):208-215.
Identification, characterization and genetic mapping of the TLR1 gene in rainbow trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)
Palti, Y., Rodriguez, M., Gahr, S.A., Purcell, M., Rexroad III, C.E., Wiens, G.D. 2010. Identification, characterization and genetic mapping of the TLR1 gene in rainbow trout (Oncorhynchus mykiss). Fish and Shellfish Immunology. 28:918-926.
Characterization of the rainbow trout transcriptome using Sanger and 454-Pyrosequencing approaches - (Abstract Only)
Salem, M., Rexroad III, C.E., Wang, J., Thorgaard, G.H., Yao, J. 2010. Characterization of the rainbow trout transcriptome using Sanger and 454-Pyrosequencing approaches. Plant and Animal Genome Conference, No. 101.
Estimates of linkage disequilibrium and effective population size in rainbow trout - (Peer Reviewed Journal)
Rexroad Iii, C.E., Vallejo, R.L. 2009. Estimates of linkage disequilibrium and effective population size in rainbow trout. BioMed Central (BMC) Genetics. 10:83.
A first generation integrated physical and genetic map of the rainbow trout genome - (Abstract Only)
Palti, Y., Luo, M., Genet, C., Hu, Y., You, F., Vallejo, R.L., Rexroad Iii, C.E. 2010. A first generation integrated physical and genetic map of the rainbow trout genome. Plant and Animal Genome Conference XVIII. Paper No. 102.
Evidence of major genes affecting bacterial cold water disease resistance in rainbow trout using Bayesian methods of complex segregation analysis - (Abstract Only)
Vallejo, R.L., Wiens, G.D., Rexroad Iii, C.E., Welch, T.J., Evenhuis, J., Leeds, T.D., Janss, L.L., Palti, Y. 2010. Evidence of major genes affecting bacterial cold water disease resistance in rainbow trout using Bayesian methods of complex segregation analysis. Plant and Animal Genome Conference XVIII. Paper No. 103.
Proteomic signature of muscle atrophy in rainbow trout - (Peer Reviewed Journal)
Salem, M., Kenney, B.P., Rexroad Iii, C.E., Yao, J. 2010. Proteomic signature of muscle atrophy in rainbow trout. Journal of Proteomics. 73(4):778-789.
Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library - (Peer Reviewed Journal)
Sanchez Castano, C., Smith, T.P., Wiedmann, R.T., Vallejo, R.L., Salem, M., Yao, J., Rexroad Iii, C.E. 2009. Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library. Biomed Central (BMC) Genomics. 10:559.
Identification, characterization, and genetic mapping of TLR7, TLR8a1 and TLR8a2 genes in rainbow trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)
Palti, Y., Gahr, S.A., Purcell, M.K., Hadidi, S., Rexroad III, C.E., Wiens, G.D. 2010. Identification, characterization, and genetic mapping of TLR7, TLR8a1 and TLR8a2 genes in rainbow trout (Oncorhynchus mykiss). Developmental and Comparative Immunology. 34:219-233.
A first generation BAC-based physical map of the Rainbow trout genome - (Peer Reviewed Journal)
Palti, Y., Luo, M., Hu, Y., Genet, C., You, F., Vallejo, R.L., Thorgaard, G., Wheeler, P., Rexroad Iii, C.E. 2009. A first generation BAC-based physical map of the Rainbow trout genome. Biomed Central (BMC) Genomics. 10:462.
A MicroRNA repertoire for functional genome research in rainbow trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)
Salem, M., Xiao, C., Womack, J., Rexroad Iii, C.E., Yao, J. 2010. A MicroRNA repertoire for functional genome research in rainbow trout (Oncorhynchus mykiss). Marine Biotechnology. 12:410-429.
Genetic assessment tools for evaluating broodstock population structure and pedigree reconstruction in rainbow trout - (Abstract Only)
Palti, Y., Vallejo, R.L., Johnson, N.A., Rexroad Iii, C.E. 2010. Genetic assessment tools for evaluating broodstock population structure and pedigree reconstruction in rainbow trout. World Aquaculture Society Meeting. San Diego, CA.
Integrative Micro-Rna and Proteomic Approaches Identify Molecular Markers Predictive of Muscle Atrophy in Rainbow Trout - (Abstract Only)
Salem, M., Kenney, B., Rexroad Iii, C.E., Yao, J. 2009. INTEGRATIVE MICRO-RNA AND PROTEOMIC APPROACHES IDENTIFY MOLECULAR MARKERS PREDICTIVE OF MUSCLE ATROPHY IN RAINBOW TROUT [abstract]. American Fisheries Society Annual Meeting. Papaer No. 10
Cloning and characterization of a novel oocyte-specific gene encoding an F-Box protein in rainbow trout (Oncorhynchus mykiss) - (Abstract Only)
Wang, L., Tripurani, S., Wanna, W., Weber, G.M., Rexroad Iii, C.E., Yao, J. 2009. Cloning and characterization of a novel oocyte-specific gene encoding an F-Box protein in rainbow trout (Oncorhynchus mykiss). Society for the Study of Reproduction Annual Meeting.
Cloning of oocyte-expressed MicroRNAs in rainbow trout (Oncorhynchus mykiss) - (Abstract Only)
Zhang, X., Xiao, C., Salem, M., Rexroad Iii, C.E., Yao, J. 2009. Cloning of oocyte-expressed MicroRNAs in rainbow trout (Oncorhynchus mykiss). Society for the Study of Reproduction Annual Meeting.
SNP discovery and marker development for disease resistance candidate genes in common carp (Cyprinus carpio) - (Abstract Only)
Kongchum, P., Hallerman, E., David, L., Hulata, G., Kotler, M., Palti, Y. 2009. SNP discovery and marker development for disease resistance candidate genes in common carp (Cyprinus carpio). International Symposium on Genetics in Aquaculture. Paper No. 001.
Identification of a functional splice variant of 14-3-3E1 in rainbow trout - (Peer Reviewed Journal)
Wanna, W., Rexroad III, C.E., Yao, J. 2010. Identification of a functional splice variant of 14-3-3E1 in rainbow trout. Marine Biotechnology. 12:70-80.
SNP identification, genetic mapping and tissue expression of the rainbow trout TLR9 gene - (Peer Reviewed Journal)
Kongchum, P., Rexroad Iii, C.E., Hallerman, E., David, L., Palti, Y. 2009. SNP identification, genetic mapping and tissue expression of the rainbow trout TLR9 gene. Animal Genetics. 40:1001.
Evidence of major genes for resistance to bacterial cold-water disease in rainbow trout using mixed inheritance multiple-threshold models and Bayesian segregation analysis - (Abstract Only)
Vallejo, R.L., Wiens, G.D., Welch, T.J., Rexroad Iii, C.E., Palti, Y. 2009. Evidence of major genes for resistance to bacterial cold-water disease in rainbow trout using mixed inheritance multiple-threshold models and Bayesian segregation analysis. Gordon Research Conference Proceedings.
Microsatellite markers for species of genus Dionda (Cyprinidae) from the American southwest - (Peer Reviewed Journal)
Renshaw, M., Carson, E., Hanna, A., Rexroad Iii, C.E., Krannemhoft, T., Gold, J. 2009. Microsatellite markers for species of genus Dionda (Cyprinidae) from the American southwest. Conservation Genetics. 10:1569-1575.
Generation of BAC-end sequences for rainbow trout genome analysis - (Abstract Only)
Genet, C., Dehais, P., Palti, Y., Gavory, F., Wincker, P. 2009. Generation of BAC-end sequences for rainbow trout genome analysis. Plant and Animal Genome Conference. P580.
A second generation genetic map for rainbow trout (Oncorhynchus mykiss)     Reprint Icon - (Peer Reviewed Journal)
Rexroad Iii, C.E., Palti, Y., Gahr, S.A., Vallejo, R.L. 2008. A second generation genetic map for rainbow trout (Oncorhynchus mykiss). BioMed Central (BMC) Genetics. 9:74.
Rainbow trout resistance to bacterial cold-water disease is moderately heritable and is not adversely correlated with growth     Reprint Icon - (Peer Reviewed Journal)
Silverstein, J., Vallejo, R.L., Palti, Y., Welch, T.J., Wiens, G.D., Rexroad Iii, C.E., Ducrocq, V., Leeds, T.D. 2008. Rainbow trout resistance to bacterial cold-water disease is moderately heritable and is not adversely correlated with growth. Journal of Animal Science. 87:860-867.
A First Generation BAC Physical Map of the Rainbow Trout Genome - (Abstract Only)
Palti, Y., Luo, M., Hu, Y., Genet, C., Vallejo, R.L., Rexroad III, C.E. 0209. A first generation bac physical map of the rainbow trout genome. Plant and Animal Genome Conference. Paper No. 100.
A MicroRNA Repertoire for Functional Genome Research in rainbow trout (Oncorhynchus mykiss) - (Abstract Only)
Salem, M., Xiao, C., Jonah, T., Rexroad III, C.E., Yao, J. 2009. MicroRNA repertoire for functional genome research in rainbow trout (Oncorhynchus mykiss). Meeting Abstract.
Single nucleotide polymorphism discovery in rainbow trout using reduced representation libraries - (Abstract Only)
Castano, C., Smith, T.P., Wiedmann, R.T., Yao, J., Rexroad III, C.E. 2009. Single nucleotide polymorphism discovery in rainbow trout using reduced representation libraries. Meeting Abstract.
Characterizing the Genetic Diversity of Rainbow Trout in Support of Broodstock Development - (Abstract Only)
Rexroad Iii, C.E., Palti, Y., Vallejo, R.L. 2009. Characterizing the Genetic Diversity of Rainbow Trout in Support of Broodstock Development. Meeting Abstract.
Aquaculture Genomics - (Book / Chapter)
Palti, Y. 2009. Aquaculture Genomics. In: Overturf, K. editor. Current Status of Molecular Techniques in Aquaculture. First Edition. Ames, IA: Wiley, John & Sons, Incorporated. 408 p.
A salmonid EST genomic study: genes, duplications, phylogeny and microarrays - (Peer Reviewed Journal)
Koop, B., Von Schalburg, K., Leong, J., Walker, N., Lieph, R., Cooper, G., Robb, A., Beetz-Sargent, M., Holt, R.A., Moore, R., Brahmbhatt, S., Rosner, J., Mcgowan, C., Rexroad Iii, C.E., Davidson, W. 2008. A salmonid EST genomic study: genes, duplications, phylogeny and microarrays. Biomed Central (BMC) Genomics. 9:545.
Microsatellite primers for red drum (Sciaenops ocellatus) - (Peer Reviewed Journal)
Karlsson, S., Renshaw, M., Rexroad III, C.E., Gold, J. 2008. Microsatellite primers for red drum (Sciaenops ocellatus). Fishery Bulletin. 106:476-82.
Transcriptomic analysis of responses to infectious salmon anemia virus infection in macrophage-like cells - (Peer Reviewed Journal)
Schiotz, B.L., Jorgensen, S.M., Rexroad III, C.E., Gjoen, T., Krasnov, A. 2008. Transcriptomic analysis of responses to infectious salmon anemia virus infection in macrophage-like cells. Virus Research. 136:65-74.
Isolation and characterization of microsatellite markers in the Serra Spanish mackerel, Scomberomorus brasiliensis - (Peer Reviewed Journal)
Renshaw, M., Douglas, K., Rexroad Iii, C.E., Churney, A., Gold, J. 2009. Isolation and characterization of microsatellite markers in the Serra Spanish mackerel, Scomberomorus brasiliensis. Molecular Ecology Resources. 9:830-832.
Towards a whole genome physical map in rainbow trout - (Abstract Only)
Genet, C., Dehais, P., Cabau, C., Palti, Y. 2008. Towards a whole genome physical map in rainbow trout [abstract]. INRA Animal Genetics Department Annual Meeting. p 98.
Cloning and characterization of microRNAs from rainbow trout (Oncorhynchus mykiss): their expression during early embryonic development - (Peer Reviewed Journal)
Ramachandra, R., Salem, M., Gahr, S.A., Rexroad III, C.E., Yao, J. 2008. Cloning and characterization of microRNAs from rainbow trout (Oncorhynchus mykiss): their expression during early embryonic development. Biomed Central (BMC) Genomics. 8:41.
Evaluation of family growth response to fish meal and plant-based diets in rainbow trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)
Pierce, L., Palti, Y., Silverstein, J., Barrows, F.T., Hallerman, E.M., Parsons, J.E. 2008. Evaluation of family growth response to fish meal and plant-based diets in rainbow trout (Oncorhynchus mykiss). Aquaculture. 278:37-42.
Suggestive association of major histocompatibility IB genetic markers with resistance to bacterial cold water disease in rainbow trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)
Johnson, N., Vallejo, R.L., Silverstein, J., Welch, T.J., Wiens, G.D., Hallerman, E.M., Palti, Y. 2008. Suggestive association of major histocompatibility IB genetic markers with resistance to bacterial cold water disease in rainbow trout (Oncorhynchus mykiss). Marine Biotechnology. 10:429-437.
Development of a 37K high-density oligo-nucleotide microarray for rainbow trout - (Peer Reviewed Journal)
Salem, M., Kenney, B., Rexroad III, C.E., Yao, J. 2008. Development of a 37K high-density oligo-nucleotide microarray for rainbow trout. Journal of Fish Biology. 72:(9)2187-2206.
Single Nucleotide Polymorphism Discovery in Rainbow Trout - (Abstract Only)
Castano, C., Yao, J., Rexroad III, C.E. 2008. Single Nucleotide Polymorphism Discovery in Rainbow Trout. Meeting Abstract.
Characterization of Linkage Disequilibrium in a Rainbow Trout Broodstock Population - (Abstract Only)
Rexroad III, C.E., Vallejo, R.L. 2008. Characterization of Linkage Disequilibrium in a Rainbow Trout Broodstock Population. Plant and Animal Genome Conference.
Genetic variations of 14-3-3E1 isoform in rainbow trout (Oncorhynchus mykiss) - (Abstract Only)
Wanna, W., Rexroad III, C.E., Jianbo, Y. 2008. Genetic variations of 14-3-3E1 isoform in rainbow trout (Oncorhynchus mykiss). Plant and Animal Genome Conference.
PCR primer pairs for 100 microsatellites in red drum (Sciaenops ocellatus) - (Peer Reviewed Journal)
Karlsson, S., Renshaw, M., Rexroad III, C.E., Gold, J. 2008. Pcr primer pairs for 100 microsatellites in red drum (sciaenops ocellatus). Molecular Ecology Notes. 8:393-398.
Effects of short term growth hormone treatment on the rainbow trout (Oncorhynchus mykiss) liver and muscle transcriptomes - (Peer Reviewed Journal)
Gahr, S.A., Vallejo, R.L., Weber, G.M., Shepherd, B.S., Silverstein, J., Rexroad III, C.E. 2008. Effects of short term growth hormone treatment on the rainbow trout (Oncorhynchus mykiss) liver and muscle transcriptomes. Physiological Genomics. 32:380-9.
Progress Toward An Immunogenetic Map for Rainbow Trout - (Abstract Only)
Palti, Y., Vallejo, R.L., Wiens, G.D., Rexroad III, C.E. 2008. Progress toward an immunogenetic map for rainbow trout. Plant and Animal Genome Conference.
Effect of starvation on global gene expression and proteolysis in rainbow trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)
Salem, M., Silverstein, J., Rexroad III, C.E., Jianbo, Y. Effect of starvation on global gene expression and proteolysis in rainbow trout (Oncorhynchus mykiss). Biomed Central (BMC) Genomics. 8:328.
Development of a High-density oligo-nucleotide microarray for rainbow trout - (Abstract Only)
Salem, M., Kenney, B., Rexroad III, C.E., Yao, J. 2008. Development of a High-density oligo-nucleotide microarray for rainbow trout. Meeting Abstract.
Isolation and characterizaton of dinucleotide microsatellites in greater amberjack, Seriola dumerili - (Peer Reviewed Journal)
Renshaw, M.A., Patton, J., Rexroad III, C.E., Gold, J. 2007. Pcr primers for dinucleotide microsatellites in greater amberjack, seriola dumerili. Conservation Genetics 2007, 8(4):1009-1011.
Involvement of Micrornas in Embryonic Genome Activation As Shown by Dicer Expression in Rainbow Trout - (Abstract Only)
Ramachandra, R., Gahr, S.A., Rexroad III, C.E., Yao, J. 2007. Involvement of micrornas in embryonic genome activation as shown by dicer expression in rainbow trout. Society for the Study of Reproduction Annual Meeting.
Identification of a Novel Germ Cell-Specific Mrna-Like Transcript (Rtgst-1) Predominantly Expressed in Early Previtellgenic Oocyte in Rainbow Trout (Oncorhynchus Mykiss) - (Abstract Only)
Qiu, G., Rexroad III, C.E., Yao, J. 2007. Identification of a novel germ cell-specific mrna-like transcript (rtgst-1) predominantly expressed in early previtellgenic oocyte in rainbow trout (oncorhynchus mykiss). Society for the Study of Reproduction Annual Meeting.
Identification of RtGST-1, a novel germ cell-specific mRNA-like transcript predominantly expressed in early previtellgenic oocytes in rainbow trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)
Qiu, G., Weber, G.M., Rexroad III, C.E., Yao, J. 2008. Identification of RtGST-1, a novel germ cell-specific mRNA-like transcript predominantly expressed in early previtellgenic oocytes in rainbow trout (Oncorhynchus mykiss). Molecular Reproduction and Development. 75:723-30.
Genomic Organization of the igf1, igf2, myf5, myf6 and grf/pacap Genes across Salmoninae Genera - (Peer Reviewed Journal)
Hoghadam, H., Ferguson, M.M., Rexroad III, C.E., Coulibaly, I., Danzmann, R.G. 2007. Genomic Organization of the igf1, igf2, myf5, myf6 and grf/pacap Genes across Salmoninae Genera. Animal Genetics. 38(5):527-532.
Progress Toward An Immunogenetic Map for Rainbow Trout - (Abstract Only)
Palti, Y., Rexroad III, C.E., Vallejo, R.L., Wiens, G.D. 2007. Progress toward an immunogenetic map for rainbow trout. Meeting Abstract.
Evolutionary sequenomics: The utility of comparative chromosomal synteny searches in revealing homologous DNA blocks derived from fish-specific 3R- and 4R-genome duplications - (Abstract Only)
(17-May-07)
Characterization of Expressed Sequence Tags from the Pituitary of Rainbow Trout (Oncorhynchus Mykiss) - (Peer Reviewed Journal)
Gahr, S.A., Rise, M., Hunt, P., Koop, B., Rexroad III, C.E. 2007. Characterization of expressed sequence tags from the pituitary of rainbow trout (oncorhynchus mykiss). Animal Biotechnology. 18(3):213-230.
Associations of Markers Linked to Major Histocompatibility (MH) Regions With Disease Resistance in Rainbow Trout - (Abstract Only)
Palti, Y., Johnson, N., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. Associations of Markers Linked to Major Histocompatibility (MH) Regions With Disease Resistance in Rainbow Trout. Meeting Abstract.
Progress Toward An Immunogenetic Map for Rainbow Trout - (Abstract Only)
Fincham, M.R., Wiens, G.D., Rexroad III, C.E., Vallejo, R.L., Palti, Y. 2007. Progress toward an immunogenetic map for rainbow trout. Meeting Abstract.
Evaluation of family growth response to fish meal and plant protein-based diets of rainbow trout (Oncorhynchus mykiss) - (Abstract Only)
Pierce, L., Palti, Y., Silverstein, J., Barrows, F.T., Hallerman, E.M., Parsons, J.E. 2007. Evaluation of family growth response to fish meal and plant protein-based diets of rainbow trout (Oncorhynchus mykiss). Meeting Abstract.
Molecular Characterization and Expression Profiles of Cyclin B1, B2 and Cdc2 Kinase during Oogenesis and Spermatogenesis in Rainbow Trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)
Qiu, G., Ramachandra, R.K., Rexroad III, C.E., Yao, J. Molecular Characterization and Expression Profiles of Cyclin B1, B2 and Cdc2 Kinase during Oogenesis and Spermatogenesis in Rainbow Trout (Oncorhynchus mykiss). Animal Reproduction Sciences 105:209-225.
Development and Critical Evaluation of a New Multiplex System for Parental Allocation and Broodstock Management in Rainbow Trout - (Peer Reviewed Journal)
Johnson, N., Rexroad III, C.E., Eric, H., Vallejo, R.L., Palti, Y. 2007. Development and critical evaluation of a new multiplex system for parental allocation and broodstock management in rainbow trout. Aquaculture 266:53-62.
Characterization of rainbow trout myostatin-2 genes (rtMSTN-2a & -2b): genomic organization, differential expression and pseudogenization - (Peer Reviewed Journal)
Garikipati, D.K., Gahr, S.A., Roalson, E.H., Rodgers, B.D. 2007. Characterization of rainbow trout myostatin-2 genes (rtMSTN-2a & -2b): genomic organization, differential expression and pseudogenization. Endocrinology 148:2106-2115.
The Complete Nuclear Estrogen Receptor Family in the Rainbow Trout: Discovery of the Novel ER.2 and Both Er. Isoforms - (Peer Reviewed Journal)
Nagler, J., Cavileer, T., Sullivan, J., Cyr, D., Rexroad III, C.E. 2007. The complete nuclear estrogen receptor family in the rainbow trout: discovery of the novel er.2 and both er. isoforms. Gene Vol 392(1-2)164-173.
Associations of Markers Linked to Major Histocompatibility (MH) Regions and to Other Immune Response Genes with Disease Resistance in Rainbow Trout - (Abstract Only)
Palti, Y., Johnson, N., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. 2006. Associations of Markers Linked to Major Histocompatibility (MH) Regions and to Other Immune Response Genes with Disease Resistance in Rainbow Trout. Plant and Animal Genome Abstracts Pg. 11.
Associations of Markers Linked to Major Histocompatibility (MH) Regions and to Other Immune Response Genes with Disease Resistance in Rainbow Trout - (Abstract Only)
Palti, Y., Johnson, N., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. 2006. Associations of Markers Linked to Major Histocompatibility (MH) Regions and to Other Immune Response Genes with Disease Resistance in Rainbow Trout. World Aquaculture Society Meeting.
Radiation Hybrid Mapping in Aquatic Species - (Book / Chapter)
Rexroad III, C.E. 2007. Radiation Hybrid Mapping in Aquatic Species. Aquaculture Genome Technologies Chapter 18.
Identification of Ests From The Rainbow Trout Pituitary - (Abstract Only)
Rexroad III, C.E., Gahr, S.A. 2007. Identification of Ests From The Rainbow Trout Pituitary. Plant and Animal Genome Conference.
Integration of Molecular Genetic Information into the Ncccwa Selective Breeding Program for Rainbow Trout - (Proceedings)
Rexroad III, C.E., Palti, Y., Vallejo, R.L., Silverstein, J. 2006. Integration of molecular genetic information into the ncccwa selective breeding program for rainbow trout. Israeli Journal of Aquaculture 58(4) 323-7.
The genetic architecture of development rate in rainbow trout: QTL, QTL x maternal environment, and candidate gene expression - (Abstract Only)
Nichols, K., Broman, K., Gahr, S.A., Rexroad III, C.E., Sundin, K., Young, J., Phillips, R., Wheeler, P., Thorgaard, G. 2006. The genetic architecture of development rate in rainbow trout: QTL, QTL x maternal environment, and candidate gene expression. [abstract]. 4th Ecological Genomics Symposium.
Assignment of Rainbow Trout Linkage Groups to Specific Chromosomes - (Peer Reviewed Journal)
Phillips, R., Nichols, K., Dekoning, J., Morasch, M., Keatley, K., Rexroad III, C.E., Gahr, S.A., Danzmann, R., Drew, R., Thorgaard, G. 2006. Assignment of rainbow trout linkage groups to specific chromosomes. Genetics 174(3):1661-1670.
Mapping of Toll Like Receptor (Tlr) Genes in Rainbow Trout - (Peer Reviewed Journal)
Palti, Y., Rodriguez, F., Vallejo, R.L., Rexroad III, C.E. 2006. Mapping of toll like receptor (TLR) genes in rainbow trout. Animal Genetics 37(6):597-598.
Mapping of Genes in a Region Associated with Upper Temperature Tolerance in Rainbow Trout - (Peer Reviewed Journal)
Coulibaly, I., Danzmann, R., Palti, Y., Vallejo, R.L., Gahr, S.A., Yao, J., Rexroad III, C.E. 2006. Mapping of genes in a region associated with upper temperature tolerance in rainbow trout. Animal Genetics 37(6):598-599.
Embryonic Expression of Uncoupling Protein 2 Genes in Rainbow Trout - (Peer Reviewed Journal)
Coulibaly, I., Gahr, S.A., Yao, J., Rexroad III, C.E. 2006. Embryonic expression of uncoupling protein 2 genes in rainbow trout. Fish Physiology and Biochemistry Journal. 32:249-253.
Microarray Gene Expression Analysis in Atrophying Rainbow Trout Muscle: An Unique Non-Mammalian Muscle Degradation Model - (Peer Reviewed Journal)
Salem, M., Kenney, B., Rexroad III, C.E., Yao, J. 2006. Microarray gene expression analysis in atrophying rainbow trout muscle: an unique non-mammalian muscle degradation model. Physiological Genomics 28:33-45.
Genomic Structure and Expression of Uncoupling Protein 2 Genes in Rainbow Trout (Oncorhynchus Mykiss) - (Peer Reviewed Journal)
Coulibaly, I., Gahr, S.A., Palti, Y., Yao, J., Rexroad III, C.E. 2006. Genomic structure and expression of uncoupling protein 2 genes in rainbow trout (oncorhynchus mykiss). Biomed Central (BMC) Genomics 7:203.
Identification of OORP-T, a novel oocyte-specific gene encoding a protein with a conserved oxysterol binding protein domain in rainbow trout - (Peer Reviewed Journal)
Ramachandra, R.K., Lankford, S.E., Weber, G.M., Rexroad III, C.E., Yao, J. 2006. Identification of OORP-T, a novel oocyte-specific gene encoding a protein with a conserved oxysterol binding protein domain in rainbow trout. Molecular Reproduction and Development 74(4) 502-11.
Evolutionary History of the Abcb2 Genomic Region in Teleosts - (Peer Reviewed Journal)
Palti, Y., Rodriguez, F., Gahr, S.A., Hansen, J.D. 2007. Evolutionary history of the abcb2 genomic region in teleosts. Developmental and Comparative Immunology 31(5):483-498.
Genomic Resources for Studying Early Life Stage Salmonid Health - (Abstract Only)
Rise, M., Honeyfield, D.C., Devlin, R.H., Rexroad III, C.E., Davidson, W.S., Koop, B.F. 2006. Genomic resources for studying early life stage salmonid health. Meeting Abstract. 7:192
Selective Breeding and Genetic Mapping of Disease Resistance in Rainbow Trout - (Abstract Only)
Palti, Y., Rexroad Iii, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. 2006. Selective breeding and genetic mapping of disease resistance in rainbow trout. Meeting Abstract. Presented at The 9th International Symposium of The International Association for Genetics in Aquaculture, June 26-30, 2006 at Montpellier, France. Meeting Book of Abstracts p. 81.
Identification, characterization, and quantitative expression analysis of rainbow trout myostatin-1a and myostatin-1b genes - (Peer Reviewed Journal)
Garikipati, D.K., Gahr, S.A., Rodgers, B.D. 2006. Identification, characterization, and quantitative expression analysis of rainbow trout myostatin-1a and myostatin-1b genes. Journal of Endocrinology. 190:879-888.
Pcr Primers for Trinucleotide and Tetranucleotide Microsatellites in Greater Amberjack, Seriola Dumerili - (Peer Reviewed Journal)
Renshaw, M.A., Patton, J.C., Rexroad III, C.E., Gold, J.R. 2006. Pcr primers for trinucleotide and tetranucleotide microsatellites in greater amberjack, seriola dumerili. Molecular Ecology Notes 6: 1162-1164.
Fasting and Refeeding Effects the Expression of the Inhibitor of DNA Binding (Id)genes in Rainbow Trout (Oncorhynchus Mykiss) Muscle - (Peer Reviewed Journal)
Gahr, S.A., Weber, G.M., Rexroad III, C.E. 2006. Fasting and refeeding effects the expression of the inhibitor of dna binding (id)genes in rainbow trout (Oncorhynchus mykiss) muscle. Comparative Biochemistry and Physiology. 144:472-477.
Salmonid Genomic Sequencing Initiative: the Case for Sequencing the Genomics of Atlantic Salmon (Salmo Salar) and Rainbow Trout (Oncorynchus Mykiss) - (Government Publication)
Davidson, W., Chevalet, C., Rexroad III, C.E., Omholt, S. 2006. Salmonid genomic sequencing initiative: the case for sequencing the genomics of atlantic salmon (salmo salar) and rainbow trout (oncorynchus mykiss). Government Publication/Report. p. 1-22.
Molecular Characterization of Fish Muscle Atrophy and Proteolysis Associated with Spawning - (Peer Reviewed Journal)
Mohamed, S., Keeney, B., Rexroad III, C.E., Yao, J. 2006. Molecular characterization of fish muscle atrophy and proteolysis associated with spawning. Comparative Biochemistry and Physiology 1(2):227-237.
Anabolic Effects of Feeding Beta-2 Adrenergic Agonists on Rainbow Trout Muscle Proteases and Myofibrillar Proteins - (Peer Reviewed Journal)
Salem, M., Levesque, A., Moon, T., Rexroad III, C.E., Yao, J. 2006. Anabolic effects of feeding beta-2 adrenergic agonists on rainbow trout muscle proteases and myofibrillar proteins. Comparative Biochemistry and Physiology. 1 44(2) 145-154.
Comparative Maps of Salmonid Genomes: An Update - (Abstract Only)
Gharbi, K., Coulibaly, I., Rexroad III, C.E., Moghadam, H., Leder, E.H., Ng, S., Davidson, W., Guyomard, R., Ferguson, M., Danzmann, R. 2006. Comparative maps of salmonid genomes: an update. Meeting Abstract. Montpellier, France 6/25 - 30, 2006.
Progress Toward a Gene Map for Rainbow Trout (Oncorhynchus Mykiss) - (Abstract Only)
Gharbi, K., Coulibaly, I., Rexroad III, C.E., Moghadam, H., Leder, E.H., Ng, S., Davidson, W., Ferguson, M., Danzmann, R. 2006. Progress toward a gene map for rainbow trout (oncorhynchus mykiss). Meeting Abstract International Symposium for Genetics in Aquaculture 6/25-30, 2006 Montpellier, France.
Genomics and Genetics:molecular Variation, Bioinformatics and Functional Genomics, Implementation into the Ncccwa Breeding Program - (Abstract Only)
Rexroad III, C.E., Palti, Y., Vallejo, R.L., Silverstein, J. 2006. Genomics and genetics:molecular variation, bioinformatics and functional genomics, implementation into the ncccwa breeding program. BARD Workshop: Aquaculture Genetics-Status and Prospects, Eilat, Israel. Meeting Abstract.
Identification and Characterization of Microsatellites for Striped Bass from Repeat-Enriched Libraries - (Peer Reviewed Journal)
Rexroad III, C.E., Vallejo, R.L., Coulibaly, I., Couch, C., Garber, A., Westerman, M., Sullivan, C. 2006. Identification and characterization of microsatellites for striped bass from repeat-enriched libraries. Conservation Genetics 7(6) 971-982.
Mapping, Expression, and Molecular Variation of Potential Candidate Genes Underlying a Major Embryonic Development Rate Qtl in Rainbow Trout - (Abstract Only)
Nichols, K., Gahr, S.A., Rexroad III, C.E., Phillips, R., Thorgaard, G. 2005. Mapping, expression, and molecualr variation of potential candidate genes underlying a major embryonic development rate qtl in rainbow trout. Plant and Animal Genome Conference. Abstract ID W205, page 54.
Characterization of Major Histocompatibility (Mh) Haplotypes and Their Association with Disease Resistance in Rainbow Trout - (Abstract Only)
Palti, Y., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J. 2005. Characterization of major histocompatibility (MH) haplotypes and their association with desease resistance in rainbow trout. Plant and Animal Genome Conference. Abstract ID P643, page 262.
Effects of Recombinant Bovine Somatotropin (Rbst) on the Liver and Muscle Transcriptomes of High Growth Rate Rainbow Trout (Oncorhynchus Mykiss) - (Abstract Only)
Gahr, S.A., Weber, G.M., Shepherd, B.S., Silverstein, J., Vallejo, R.L., Coulibaly, I., Rexroad III, C.E. 2005. Effects of Recombinant Bovine Somatotropin (rbst) on the Liver and Muscle Transcriptomes of High Growth Rate Rainbow Trout (Oncorhynchus Mykiss). Plant and Animal Genome Conference, Jan 2006. Abstract ID P534, pg 260.
Genomic Structure and Expression Patterns of Uncoupling Protein 2 Genes in Rainbow Trout - (Abstract Only)
Coulibaly, I., Gahr, S.A., Palti, Y., Yao, J., Rexroad III, C.E. 2005. Genomic structure and expression patterns of uncoupling protein 2 genes in rainbow trout. Plant and Animal Genome Conference. Abstract ID W188, page 50.
Microsatellite Markers for Population Genetics and Genome Mapping in Striped Bass - (Abstract Only)
Rexroad III, C.E., Coulibaly, I., Couch, C., Garber, A., Westerman, M., Sullivan, C. 2005. Microsatellite markers for population genetics and genome mapping in striped bass. Plant and Animal Genome Conference. Abstract ID P638, page 261.
The National Center for Cool and Cold Water Aquaculture Genetic Map for Rainbow Trout - (Abstract Only)
Rexroad III, C.E., Danzmann, R., Palti, Y., Vallejo, R.L. 2005. The national center for cool and cold water aquaculture genetic map for rainbow trout. Plant and Animal Genome Conference. Abstract ID P639, page 261.
Isolation and Characterization of 149 Novel Microsatellite DNA Markers for Striped Bass, Morone Saxatilis, and Cross-Species Amplification in White Bass, M. Chrysops, and Their Hybrid - (Peer Reviewed Journal)
Couch, C., Garber, A., Rexroad III, C.E., Abrams, J., Stannard, J., Westerman, M., Sullivan, C. 2006. Isolation and characterization of 149 novel microsatellite dna markers for striped bass, morone saxatilis, and cross-species amplification in white bass, m. chrysops, and their hybrid. Molecular Ecology Notes. 6(3):667-669.
A Pcr Screening Method for Rapid Detection of Microsatellites in Bacterial Artificial Chromosomes (Bacs) - (Peer Reviewed Journal)
Rodriguez, M.F., Gahr, S.A., Rexroad III, C.E., Palti, Y. 2006. A pcr screening method for rapid detection of microsatellites in bacterial artificial chromosomes (bacs). Marine Biotechnology DOI: 10.1007/s10126-005-5064-7. Online Publication 5/25/2006.
Identification and Regulation of Rainbow Trout Tapasin and Tapasin-Related Genes - (Peer Reviewed Journal)
Landis, E.D., Palti, Y., Dekoning, J., Drew, R., Phillips, R.B., Hansen, J.D. 2006. Identification and regulation of rainbow trout tapasin and tapasin-related genes. Immunogenetics 58(1):56-69.
Starvation induced alterations in hepatic lysine metabolism in different families of rainbow trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)
Higgins, A., Silverstein, J., Engles, J., Wilson, M., Rexroad III, C.E., Blemmings, K. 2006. Starvation induced alterations in hepatic lysine metabolism in different families of rainbow trout (Oncorhynchus mykiss). Fish Physiology and Biochemistry Journal. 31(1):33-44.
Mapping and Functional Genomics of the Tapbp and Tapbp-R Genes in Rainbow Trout - (Abstract Only)
Landis, E.D., Palti, Y., Dekoning, J., Phillips, R.B., Hansen, J.D. 2006. Mapping and functional genomics of the TAPBP and TAPBP-R genes in rainbow trout. Plant and Animal Genome Conference. Meeting book of Abstracts p. 253.
Critical Evaluation of a New Multiplex System Used for Parental Allocation and Broodstock Management in Rainbow Trout (Oncorhynchus Mykiss) Selection Programs - (Abstract Only)
Johnson, N., Palti, Y., Rexroad III, C.E., Silverstein, J., Vallejo, R.L. 2006. Critical evaluation of a new multiplex system used for parental allocation and broodstock management in rainbow trout (oncorhynchus mykiss) selection programs. World Aquaculture Society Meeting.
Estrogen Receptor Alpha-2: a Novel Isoform from the Rainbow Trout - (Abstract Only)
Nagler, J., Cavileer, T., Cyr, D., Rexroad III, C.E. 2005. Estrogen receptor alpha-2: a novel isoform from the rainbow trout. Society for the Study of Reproduction Annual Meeting. 38:M184.
Genomic Sequence and Annotation of a Region That Harbors Major Histocompatibility Genes in Rainbow Trout - (Abstract Only)
Palti, Y., Rodriguez, M.F., Gahr, S.A., Rexroad Iii, C.E., Hansen, J.D. 2005. Genomic sequence and annotation of a region that harbors major histocompatibility genes in rainbow trout. Meeting Abstract. The 3rd International Symposium of Genetics of Animal Health, July 13-15, 2005 held in Ames, Iowa, USA, Meeting Book of Abstracts p. 124.
Characterization of the Calpastatin Gene in Fish: Its Potential Role in Muscle Growth and Fillet Quality - (Peer Reviewed Journal)
Mohamed, S., Yao, J., Rexroad III, C.E., Kenney, B., Semmens, K., Killefer, J., Nath, J. 2005. Characterization of the calpastatin gene in fish: its potential role in muscle growth and fillet quality. Comparative Biochemistry and Physiology 141: 488-97.
Identification of a Novel Gill Specific Calpain from the Rainbow Trout (Oncorhynchus Mykiss) - (Peer Reviewed Journal)
Salem, S., Rexroad Iii, C.E., Yao, J. 2006. Identification of a novel gill specific calpain from the rainbow trout (oncorhynchus mykiss). Fish Physiology and Biochemistry Journal. 32:1-6.
Microsatellite Development for a Hybrid Striped Bass (Morone Chrysops X M. Saxatilis) Selective Breeding Program - (Abstract Only)
Couch, C., Garber, A., Abrams, J., Rexroad III, C.E., Westerman, M., Sullivan, C. 2005. Microsatellite development for a hybrid striped bass (morone chrysops x m. saxatilis) selective breeding program. Meeting Abstract. International Marine Biotechnology Conference, June 7 - 12, 2005, St. Johns, New Foundland, Canada.
Amplified Intergenic Locus Polymorphism As a Basis for Bacterial Typing of Listeria Ssp. and Escherichia Coli - (Peer Reviewed Journal)
Somer, L., Danin-Poleg, Y., Diamant, E., Palti, Y., Kashi, Y. 2005. Amplified intergenic locus polymorphism as a basis for bacterial typing of listeria ssp. and escherichia coli. Applied and Environmental Microbiology. 71(6):3144-3152.
Transcriptome Responses to Carbon Tetrachloride and Pyrene in the Kidney and Liver of Juvenile Rainbow Trout (Oncorhynchus Mykiss) - (Peer Reviewed Journal)
Krasnov, A., Koskinen, H., Rexroad III, C.E., Afanasyev, S., Molsa, H., Oikari, A. 2005. Transcriptome responses to carbon tetrachloride and pyrene in the kidney and liver of juvenile rainbow trout (oncorhynchus mykiss). Aquatic Toxicology 74: 70-81.
Gene Expression of the Inhibitor of DNA Binding (Id) Proteins During Embryonic Development in the Rainbow Trout (Oncorhynchus Mykiss) - (Abstract Only)
Gahr, S.A., Rexroad III, C.E. 2005. Gene expression of the inhibitor of DNA binding (ID) proteins during embryonic development in the rainbow trout (oncorhynchus mykiss). Aquaculture America Conference January 17-20, page 140 New Orleans, LA.
Genomic Sequencing of a Rainbow Trout Major Histocompatibility Region That Harbors Class II and Class III Genes - (Abstract Only)
Palti, Y., Fincham, M.R., Rodriguez, M.F., Gahr, S.A., Rexroad III, C.E., Hansen, 2005. J. Genomic sequencing of a rainbow trout major histocompatibility region that harbors class ii and class iii genes. Plant and Animal Genome XIII Abstracts P606, pg 222.
Assignment of Rainbow Trout Linkage Groups to Specific Chromosomes - (Abstract Only)
Phillips, R., Noakes, M., Dekoning, J., Morasch, M., Keatley, K., Rexroad III, C.E., Palti, Y., Danzmann, R., Nichols, K., Drew, R., Thorgaard, G. 2005. Assignment of rainbow trout linkage groups to specific chromosomes. Plant and Animal Genome XIII Abstracts W034, page 13.
Identifying Candidate Genes for Rainbow Trout Oncorhynchus Mykiss Aquaculture Research - (Abstract Only)
Rexroad III, C.E., Gahr, S.A., Palti, Y. 2005. Identifying candidate genes for rainbow trout (Oncorhynchus mykiss) aquaculture research. Aquaculture America Conference page 362, January 17-20, New Orleans, LA.
Development of Comparative Maps Using Microsatellites Developed from Rainbow Trout Est - (Abstract Only)
Rexroad III, C.E., Rodriguez, M.F., Danzmann, R., Palti, Y. 2005. Development of comparative maps using microsatellites developed from rainbow tourt est. Plant and Animal Genome XIII P604, page 221.
Genomic Characterization of Rainbow Trout (Oncorhynchus Mykiss) Toll-Like Receptor Genes - (Abstract Only)
Rodriguez, M.F., Wiens, G.D., Gahr, S.A., Rexroad III, C.E., Palti, Y. 2005. Genomic characterization of rainbow trout (Oncorhynchus mykiss) toll-like receptor genes. Plant and Animal Genome XIII Abstract W030 page 12.
Molecular Characterization of Calpastatins from Rainbow Trout: Their Role in Muscle Growth and Fillet Texture Development - (Abstract Only)
Salem, M., Yao, J., Rexroad III, C.E., Kenney, B., Semmens, K., Killefer, J., Nath, J. 2005. Molecular characterization of calpastatins from rainbow trout: their role in muscle growth and fillet texture development. Aquaculture America Conference 2005 page 388.
Transcriptome Analyses of Rainbow Trout Oocytes - (Abstract Only)
Yao, J., Higgins, A., Rexroad III, C.E. 2005. Transcriptome analyses of rainbow trout oocytes. Plant and Animal Genome XIII p33, page 88.
Characterization and Comparison of Microsatellites Derived from Repeat-Enriched Libraries and Expressed Sequence Tags - (Peer Reviewed Journal)
Coulibaly, I., Gharbi, K., Danzmann, R., Yao, J., Rexroad III, C.E. 2005. Characterization and comparison of microsatellites derived from repeat-enriched libraries and expressed sequence tags. Animal Genetics 36, 309-315.
Comparisons of Microsatellites Derived from Repeat-Enriched Libraries and Est in Rainbow Trout (Oncorhynchus Mykiss) - (Abstract Only)
Coulibaly, I., Yao, J., Rexroad III, C.E. 2005. Comparisons of microsatellites derived from repeat-enriched libraries and est in rainbow trout (Oncorhynchus mykiss). Plant and Animal Genome XIII P602 pg 221.
Tissue Distribution and Embryonic Expression of the Inhibitor of Differentiation/dna Binding (Id) Family of Proteins in the Rainbow Trout (Oncorhynchus Mykiss) - (Abstract Only)
Gahr, S.A., Rexroad III, C.E. 2005. Tissue distribution and embryonic expression of the inhibitor of differentiation/DNA binding (ID) family of proteins in the rainbow trout (Oncorhynchus mykiss). Plant and Animal Genome, XIII P603, pg 221.
Last Modified: 8/1/2014
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