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United States Department of Agriculture

Agricultural Research Service

Geoffrey C Waldbieser (Geoff)
Research Molecular Biologist


Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Draft genome sequences of four virulent aeromonas hydrophila strains from catfish aquaculture -
The channel catfish genome sequenc provides insights into the evolution of scale formation in teleosts -
Liu, Z., Liu, S., Yao, J., Bao, L., Jiang, C., Want, R., Sun, L., Li, Y., Zhang, Y., Zhang, J., Zhou, T., Zeng, Q., Fu, Q., Gao, S., Li, N., Koren, S., Jiang, Y., Zimim, A., Xu, P., Phillippy, A., Geng, X., Song, L., Sun, F., Li, C., Want, X., Chen, A., Jin, Y., Yuan, Z., Yang, Y., Tan, S., Peatman, E., Lu, J., Qin, Z., Dunham, R., Li, Z., Sonstegard, T.S., Feng, J., Danzmann, R.G., Schroeder, S.G., Scheffler, B.E., Duke, M.V., Ballard, L.L., Kucuktas, H., Kaltenboeck, L., Liu, H., Armbruster, J., Xie, Y., Kirby, M.A., Tian, Y., Moore Flanagan, M.E., Mu, W., Waldbieser, G.C. 2016. The channel catfish genome sequenc provides insights into the evolution of scale formation in teleosts. Nature Communications. doi:10.1038/ncomms11757.
Genome sequence of the fish pathogen Flavobacterium columnare genomovar II strain 94-081 -
Kumru, S., Tekedar, H., Waldbieser, G.C., Lawrence, M.L., Karsi, A. 2016. Genome sequence of the fish pathogen Flavobacterium columnare genomovar II strain 94-081. Genome Announcements. 4:e00430-16.
Draft genome sequence of Aeromonas hydrophila TN97-08 -
Tekedar, H., Kumru, S., Karsi, A., Waldbieser, G.C., Sonstegard, T., Schroeder, S.G., Liles, M., Griffin, M., Lawrence, M. 2016. Draft genome sequence of Aeromonas hydrophila TN97-08. Genome Announcements. 4:e00436-16.
Potency of blue catfish, Ictalurus furcatus (individual vs pooled) sperm to fertilize stripped channel catfish, I. punctatus eggs on the production and performance of progeny -
Chatakondi, N.G., Waldbieser, G.C. 2016. Potency of blue catfish, Ictalurus furcatus (individual vs pooled) sperm to fertilize stripped channel catfish, I. punctatus eggs on the production and performance of progeny. Annual Meeting World Aquaculture Society. P. 18.
Intragenomic heterogeneity in the 16S rRNA genes of Flavobacterium columnare and standard protocol for genomovar assignment -
Lafrentz, B.R., Waldbieser, G.C., Welch, T.J., Shoemaker, C.A. 2015. Intragenomic heterogeneity in the 16S rRNA genes of Flavobacterium columnare and standard protocol for genomovar assignment. Flavobacterium 2015. p. 17.
Complete genome sequence of an Edwardsiella piscicida-like species recovered from tilapia in the United States -
Reichley, S.R., Waldbieser, G.C., Lawrence, M.L., Griffin, M.J. 2015. Complete genome sequence of an Edwardsiella piscicida-like species recovered from tilapia in the United States. Genome Announcements. 3:e01004-15.
Complete genome sequence of Edwardsiella tarda (isolate FL95-01)recovered from channel catfish -
Reichley, S.R., Waldbieser, G.C., Tekedar, H.C., Lawrence, M., Griffin, M. 2015. Complete genome sequence of Edwardsiella tarda (isolate FL95-01)recovered from channel catfish. Genome Announcements. 3:e00682-15.
Intragenomic heterogeneity in the 16S rRNA genes of Flavobacterium columnare and standard protocol for genomovar assignment -
Lafrentz, B.R., Waldbieser, G.C., Welch, T.J., Shoemaker, C.A. 2015. Intragenomic heterogeneity in the 16S rRNA genes of Flavobacterium columnare and standard protocol for genomovar assignment [abstract]. European Association of Fish Pathologists. p. 105.
Complete genome sequence of Aeromonas hydrophila AL06-06 -
Tekedar, H., Karsi, A., Akgul, A., Kalindamar, S., Waldbieser, G.C., Sonstegard, T.S., Schroeder, S.G., Lawrence, M. 2015. Complete genome sequence of Aeromonas hydrophila AL06-06. Genome Announcements. 3(2):e00368-15.
Effects of a phytogenic feed additive on susceptibility of channel catfish to Edwardsiella ictaluri and levels of mannose binding lectin -
Peterson, B.C., Peatman, E., Ourth, D.D., Waldbieser, G.C. 2015. Effects of a phytogenic feed additive on susceptibility of channel catfish to Edwardsiella ictaluri and levels of mannose binding lectin. Fish and Shellfish Immunology. 44:21-25.
Construction of a high-density high-resolution genetic map and its integration with BAC-based physical map in channel catfish -
Relationship between expression of muscle-specific uncoupling protein 2 messenger RNA and genetic selection toward growth in channel catfish -
Kobayashi, Y., Peterson, B.C., Waldbieser, G.C. 2015. Relationship between expression of muscle-specific uncoupling protein 2 messenger RNA and genetic selection toward growth in channel catfish. Domestic Animal Endocrinology. 51:56-64.
Intragenomic heterogeneity in the 16S rRNA genes of Flavobacterium columnare and standard protocol for genomovar assignment -
Lafrentz, B.R., Waldbieser, G.C., Welch, T.J., Shoemaker, C.A. 2014. Intragenomic heterogeneity in the 16S rRNA genes of Flavobacterium columnare and standard protocol for genomovar assignment [abstract]. International Symposium on Aquatic Animal Health. p.92.
SNP discovery in wild and domesticated populations of blue catfish, Ictalurus furcatus, using genotyping-by-sequencing and subsequent SNP validation -
Li, C., Waldbieser, G.C., Bosworth, B.G., Beck, B.H., Thongda, W., Peatman, E. 2014. SNP discovery in wild and domesticated populations of blue catfish, Ictalurus furcatus, using genotyping-by-sequencing and subsequent SNP validation. Molecular Ecology Resources. 14(6):1261-1270.
The cytochrome P450 genes of channel catfish: their involvement in disease defense responses as revealed by meta-analysis of RNA-Seq datasets -
Zhang, J., Yao, J., Wang, R., Zhang, Y., Liu, S., Sun, L., Jiang, Y., Feng, J., Liu, N., Nelson, D., Waldbieser, G.C., Liu, Z. 2014. The cytochrome P450 genes of channel catfish: their involvement in disease defense responses as revealed by meta-analysis of RNA-Seq datasets. Biochimica et Biophysica Acta. 1840:2813-2828.
Effects of a phytogenic feed additive on growth and susceptibility of channel catfish to Edwardsiella ictaluri and levels of mannose and rhamnose binding lectin -
General and specific combining ability of male blue catfish Ictalurus furcatus and female channel catfish I. punctatus for growth and carcass yield of their F1 hybrid progeny -
Bosworth, B.G., Waldbieser, G.C. 2014. General and specific combining ability of male blue catfish Ictalurus furcatus and female channel catfish I. punctatus for growth and carcass yield of their F1 hybrid progeny. Aquaculture. 420-421:S29-S35.
Implication of lateral genetic transfer in the emergence of Aeromonas hydrophila isolates of epidemic outbreaks in channel catfish -
Hossain, M., Waldbieser, G.C., Sun, D., Capps, N., Hemstreet, W., Griffin, M.J., Khoo, L., Goodwin, A., Sonstegard, T.S., Schroeder, S.G., Hayden, K., Terhune, J.S., Lies, M.R. 2013. Implication of lateral genetic transfer in the emergence of Aeromonas hydrophila isolates of epidemic outbreaks in channel catfish. PLoS One. 8:e80943.
Transcriptional regulation of teleost aicda genes. Pt 1 suppressors of promiscuous promoters -
Vollota-Herdoiza, D., Pila, E.A., Quiniou, S., Waldbieser, G.C., Magor, B. 2013. Transcriptional regulation of teleost aicda genes. Pt 1 suppressors of promiscuous promoters. Fish and Shellfish Immunology. 35(6):1981-1987.
Complete genome sequence of channel catfish epidemic isolate Aeromonas hydrophila ML09-119 -
Tekedar, H., Waldbieser, G.C., Karsi, A., Liles, M., Griffin, M., Vamenta, S., Sonstegard, T.S., Hossain, M., Schroeder, S.G., Khoo, L., Lawrence, M. 2013. Complete genome sequence of channel catfish epidemic isolate Aeromonas hydrophila ML09-119. Genome Announcements. 1(5):e00755-13.
Intragenomic heterogeneity in the 16S rRNA genes of Flavobacterium columnare and relevance to genomovar assignment -
Lafrentz, B.R., Waldbieser, G.C., Welch, T.J., Shoemaker, C.A. 2013. Intragenomic heterogeneity in the 16S rRNA genes of Flavobacterium columnare and relevance to genomovar assignment. Genbank. Accession Nos. KC912647-KC912684.
Intragenomic heterogeneity in the 16S rRNA genes of Flavobacterium columnare and standard protocol for genomovar assignment Reprint Icon -
Lafrentz, B.R., Waldbieser, G.C., Welch, T.J., Shoemaker, C.A. 2014. Intragenomic heterogeneity in the 16S rRNA genes of Flavobacterium columnare and standard protocol for genomovar assignment. Journal of Fish Diseases. 37(7):657-669.
Rapid quantitative detection of Aeromonas hydrophila strains associated with disease outbreaks in catfish aquaculture -
Griffin, M., Goodwin, A., Merry, G., Williams, M., Liles, M., Waldbieser, G.C. 2013. Rapid quantitative detection of Aeromonas hydrophila strains associated with disease outbreaks in catfish aquaculture. Journal of Veterinary Diagnostic Investigation. 25:473-481.
Histological and computed tomographic evaluation of a parasitic conjoined twin in hybrid catfish Ictalurus punctatus X I. furcatus -
Leach, C., Thomas, M., Cooley, A.J., Waldbieser, G.C., Bosworth, B.G., Torrans, E.L., Khoo, L. 2014. Histological and computed tomographic evaluation of a parasitic conjoined twin in hybrid catfish Ictalurus punctatus X I. furcatus. Journal of Fish Diseases. 37:521-526.
Histological and computed tomographic evaluation of a parasitic conjoined twin in hybrid catfish (Ictalurus punctatus [rafinesque] X Ictalurus furcatus [lesueur]) -
Leech, C.A., Thomas, M.W., Cooley, A.J., Waldbieser, G.C., Bosworth, B.G., Torrans, E.L., Khoo, L.H. 2014. Histological and computed tomographic evaluation of a parasitic conjoined twin in hybrid catfish (Ictalurus punctatus [rafinesque] X Ictalurus furcatus [lesueur]). Journal of Fish Diseases. 37:521-526.
Comparative genomic analysis of catfish linkage group 8 reveals two homologous chromosomes in zebrafish and other teleosts with extensive inter-chromosomal rearrangements -
Zhang, Y., Liu, S., Lu, J., Jiang, Y., Sungao, X., Ninwichian, P., Li, C., Waldbieser, G.C., Liu, Z. 2013. Comparative genomic analysis of catfish linkage group 8 reveals two homologous chromosomes in zebrafish and other teleosts with extensive inter-chromosomal rearrangements. Biomed Central (BMC) Genomics. 14:387.
Intragenomic heterogeneity in the 16S rRNA genes of Flavobacterium columnare and relevance to genomovar assignment -
Lafrentz, B.R., Waldbieser, G.C., Welch, T.J., Shoemaker, C.A. 2013. Intragenomic heterogeneity in the 16S rRNA genes of Flavobacterium columnare and relevance to genomovar assignment [abstract]. Annual Eastern Fish Health Workshop. p. 24.
A standardized microsatellite marker panel for parentage and kinship analyses in channel catfish, Ictalurus punctatus -
Waldbieser, G.C., Bosworth, B.G. 2013. A standardized microsatellite marker panel for parentage and kinship analyses in channel catfish, Ictalurus punctatus. Animal Genetics. 44:476-479.
Roles for mannose binding lectin and rhamnose binding lectin in channel catfish fed essential oils and challenged with Edwardsiella ictaluri -
Peterson, B.C., Peatman, E., Ourth, D.D., Booth, N.J., Waldbieser, G.C. 2013. Roles for mannose binding lectin and rhamnose binding lectin in channel catfish fed essential oils and challenged with Edwardsiella ictaluri. Aquaculture America Conference. P.854.
Efficient assembly and annotation of the transcriptome of catfish by RNA-seq analysis of a doubled haploid homozygote -
Liu, S., Zhang, Y., Zhou, Z., Waldbieser, G.C., Sun, F., Lu, J., Zhang, J., Jiang, Y., Zhang, H., Wang, X., Rajendran, K.V., Khoo, L., Kucuktas, H., Peatman, E., Liu, Z. 2012. Efficient assembly and annotation of the transcriptome of catfish by RNA-seq analysis of a doubled haploid homozygote. Biomed Central (BMC) Genomics. 13:595.
Identification of potential genetic markers for improved growth rate in channel catfish -
Pre and postprandial changes in orexigenic and anorexigenic factors in channel catfish Ictalurus punctatus -
Genetic diversity of cultured and wild populations of the freshwater prawn Macrobrachium rosenbergii based on microsatellite analysis -
Schneider, K.J., Tidwell, J.H., Gomelsky, B., Pomper, K.W., Waldbieser, G.C., Saillant, E., Mather, P.B. 2013. Genetic diversity of cultured and wild populations of the freshwater prawn Macrobrachium rosenbergii based on microsatellite analysis. Aquaculture Research. 44:1425-1437.
Genome sequence of the fish pathogen Flavobacterium columnare ATCC 49512 Reprint Icon -
Tekedar, H., Karsi, A., Gillaspy, A., Dyer, D., Benton, N., Zaitshik, J., Vamenta, S., Banes, M., Gulsoy, N., Aboko-Cole, M., Waldbieser, G.C., Lawrence, M. 2012. Genome sequence of the fish pathogen Flavobacterium columnare ATCC 49512. Journal of Bacteriology. 194:2763-2764.
Pre and postprandial changes in orexigenic and anorexigenic factors in channel catfish Ictalurus punctatus Reprint Icon -
Peterson, B.C., Waldbieser, G.C., Riley, Jr, L.G., Upton, K.R., Kobayashi, Y., Small, B.C. 2012. Pre and postprandial changes in orexigenic and anorexigenic factors in channel catfish Ictalurus punctatus. General and Comparative Endocrinology. 176(2):231-239.
Genome sequence of Edwardsiella ictaluri 93-146 a strain associated with a natural channel catfish outbreak of enteric septicemia of catifsh Reprint Icon -
Williams, M., Gillaspy, A., Dyer, D., Thune, R., Waldbieser, G.C., Schuster, S., Gipson, J., Zaitshik, J., Landry, C., Banes, M., Lawrence, M. 2012. Genome sequence of Edwardsiella ictaluri 93-146 a strain associated with a natural channel catfish outbreak of enteric septicemia of catifsh. Journal of Bacteriology. 194(3):740-741.
Alternative complement pathway of channel catfish Ictalurus punctatus: molecular characterization and expression analysis of factors Bf/C2 and Df Reprint Icon -
Zhou, Z., Liu, H., Liu, S., Sun, F., Peatman, E., Kucuktas, H., Kaltenboeck, L., Feng, T., Zhang, H., Niu, D., Lu, J., Waldbieser, G.C., Liu, Z. 2012. Alternative complement pathway of channel catfish Ictalurus punctatus: molecular characterization and expression analysis of factors Bf/C2 and Df. Fish and Shellfish Immunology. 132:186-195.
SNP discovery through de novo deep sequencing using the next generation of DNA sequencers -
Waldbieser, G.C. 2011. SNP discovery through de novo deep sequencing using the next generation of DNA sequencers. Whole Genome-based Selection for Aquaculture: Principles and Protocols. p. 69-90.
Characterization of mannose binding lectin from channel catfish Ictalurus punctatus Reprint Icon -
Zhang, H., Peatman, E., Liu, H., Niu, D., Feng, T., Kucuktas, H., Waldbieser, G.C., Chen, L., Liu, Z. 2012. Characterization of mannose binding lectin from channel catfish Ictalurus punctatus. Research in Veterinary Science. 92:408-413.
Comparative genomic analysis of bacteriophages specific to the channel catfish pathogen Edwardsiella ictaluri Reprint Icon -
Carrias, A., Welch, T.J., Waldbieser, G.C., Mead, D.A., Terhune, J.S., Liles, M.R. 2011. Comparative genomic analysis of bacteriophages specific to the channel catfish pathogen Edwardsiella ictaluri. Virology Journal. 8:6. DOI: 10.1186/1743-422X-8-6.
Microfibrillar associated protein 4 mfap4 genes in catfish play a novel role in innate immune responses Reprint Icon -
Niu, D., Peatman, E., Liu, H., Lu, J., Kucuktas, H., Liu, S., Sun, F., Zhang, H., Feng, T., Zhou, Z., Terhune, J., Waldbieser, G.C., Li, J., Liu, Z. 2011. Microfibrillar associated protein 4 mfap4 genes in catfish play a novel role in innate immune responses. Developmental and Comparative Immunology. 35:568-579.
Mapping of the toll like receptor family in channel catfish, Ictalurus punctatus -
Quiniou, S., Waldbieser, G.C. 2011. Mapping of the toll like receptor family in channel catfish, Ictalurus punctatus. Animal Genetics. 42:567-568.
Molecular responses of calreticulin genes to iron overload and bacterial challenge in channel catfish Ictalurus punctatus -
Molecular responses of calreticulin genes to iron overload and bacterial challenge in channel catfish (Ictalurus punctatus) Reprint Icon -
Liu, H., Peatman, E., Wang, W., Abernathy, J., Liu, S., Kucuktas, H., Lu, J., Xu, D., Klesius, P.H., Waldbieser, G.C., Liu, Z. 2011. Molecular responses of calreticulin genes to iron overload and bacterial challenge in channel catfish (Ictalurus punctatus). Developmental and Comparative Immunology. 35:267-272.
Molecular responses of calreticulin genes to iron overload and bacterial challenge in channel catfish Ictalurus punctatus Reprint Icon -
Identification of two uncoupling protein 2 mRNA in channel catfish: their tissue distribution and changes in their expression after prolonged fasting and refeeding -
Molecular Identification of XY Sex-Reversed Female and YY Male Channel Catfish -
Waldbieser, G.C., Davis Jr, K.B. 2010. Molecular Identification of XY Sex-Reversed Female and YY Male Channel Catfish. 32nd Conference of the International Animal Genetics, Edinburgh, Scotland, July 26-30, 2010. pg.114.
Golden catfish microsatellite analysis reveals a distinct Iinbred stock of channel catfish -
Assembly of 500,000 Inter-Specific Catfish Expressed Sequence Tags and Large Scale Gene-Associated Marker Development for Whole Genome Association Studies -
Wang, S., Peatman, E., Abernathy, J., Waldbieser, G.C., Lindquist, E., Richardson, P., Murdock, C.A., Small, B.C., Quiniou, S., Liu, Z. 2010. Assembly of 500,000 Inter-Specific Catfish Expressed Sequence Tags and Large Scale Gene-Associated Marker Development for Whole Genome Association Studies. Genome Biology. 11:R8.
Identification of Two Cholecystokinin mRNA in Channel Catfish: Their Tissue Distribution and Changes in Their Expression After Prolonged Fasting and Refeeding -
Kobayashi, Y., Peterson, B.C., Waldbieser, G.C. 2010. Identification of Two Cholecystokinin mRNA in Channel Catfish: Their Tissue Distribution and Changes in Their Expression After Prolonged Fasting and Refeeding. Aquaculture America Conference.P: 533
Production of homozygous, doubled haploid channel catfish via hydrostatic pressure and thermal treatments Reprint Icon -
Waldbieser, G.C., Bosworth, B.G., Quiniou, S. 2010. Production of homozygous, doubled haploid channel catfish via hydrostatic pressure and thermal treatments. Marine Biotechnology. 12:380-385.
Use of Molecular Markers for Catfish Production and Product Quality -
Waldbieser, G.C. 2009. Use of Molecular Markers for Catfish Production and Product Quality. American Chemical Society National Meeting. P: 142
Effects of fasting on IGF-I, IGF-II, and IGF-binding protein mRNA concentrations in channel catfish (Ictalurus punctatus) -
Peterson, B.C., Waldbieser, G.C. 2009. Effects of fasting on IGF-I, IGF-II, and IGF-binding protein mRNA concentrations in channel catfish (Ictalurus punctatus). Domestic Animal Endocrinology. 37:74-83.
Identification and Expression Analyses of Poly[I:C]-stimulated Genes in Channel Catfish (Ictalurus punctatus) Reprint Icon -
Milev-Milovanovic, I., Majji, S., Thodima, J., Deng, Y., Hanson, L., Arnizaut, A., Waldbieser, G.C., Chinchar, V.G. 2009. Identification and Expression Analyses of Poly[I:C]-stimulated Genes in Channel Catfish (Ictalurus punctatus). Fish and Shellfish Immunology 26:811-820.
Expression Profiling Using New Generation Sequencing Technologies -
Waldbieser, G.C. 2009. Expression Profiling Using New Generation Sequencing Technologies. Developmental and Comparative Immunology. P: 305
Patterns of Receptor Revision in Immunoglobulin H Chains of A Teleost Fish Reprint Icon -
Lange, M.D., Waldbieser, G.C., Lobb, C.J. 2009. Patterns of Receptor Revision in Immunoglobulin H Chains of A Teleost Fish. Journal of Immunology 182:5605-5622.
Expression Analysis of Selected Immune Relevant Genes in Channel Catfish During Edwardsiella ictaluri Infection -
Elibol-Flemming, B., Wolters, W.R., Waldbieser, G.C., Boyle, C.R., Hanson, L.A. 2009. Expression Analysis of Selected Immune Relevant Genes in Channel Catfish During Edwardsiella ictaluri Infection. Journal of Aquatic Animal Health 21:23-35.
Expression Profiles of Cloned Channel Catfish (Ictalurus punctatus) Lymphoid Cell Lines and Mixed Lymphocyte Cultures -
Majji, S., Thodima, V., Arnizaut, A., Deng, Y., May, W., Sittman, D., Waldbieser, G.C., Hanson, L., Cuchens, M.A., Bengten, E., Chinchar, V.G. 2009. Expression Profiles of Cloned Channel Catfish (Ictalurus punctatus) Lymphoid Cell Lines and Mixed Lymphocyte Cultures. Developmental and Comparative Immunology. 33:224-234.
Stability of Reference Genes for Real-Time PCR Analyses in Channel Catfish (Ictalurus punctatus) Tissues Under Varying Physiological Conditions -
Small, B.C., Murdock, C.A., Bourgeois, A.L., Peterson, B.C., Waldbieser, G.C. 2008. Stability of Reference Genes for Real-Time PCR Analyses in Channel Catfish (Ictalurus punctatus) Tissues Under Varying Physiological Conditions. Comparative Biochemistry and Physiology 151:296-304.
Association of Cocaine- and Amphetamine-Regulated Transcript (CART) Messenger RNA Level, Food Intake, and Growth in Channel Catfish Reprint Icon -
Kobayashi, Y., Peterson, B.C., Waldbieser, G.C. 2008. Association of Cocaine- and Amphetamine-Regulated Transcript (CART) Messenger RNA Level, Food Intake, and Growth in Channel Catfish. Comparative Biochemistry and Physiology 151:219-225.
Cart Regulates Food Intake in Channel Catfish -
Kobayashi, Y., Peterson, B.C., Waldbieser, G.C. 2008. Regulators of Food Intake in Channel Catfish. Global Aquaculture Advocate July/August p. 66-67.
Nutritional Regulation of IGFs in Channel Catfish -
Peterson, B.C., Waldbieser, G.C., Small, B.C. 2008. Nutritional Regulation of IGFs in Channel Catfish. Proceedings of International Congress on Biology of Fishes. P: 73
Characterization of the RRN Operons in the Channel Catfish Pathogen Edwardsiella ictaluri -
Williams, M., Waldbieser, G.C., Dyer, D.W., Gillaspy, A.F., Lawrence, M.L. 2008. Characterization of the RRN Operons in the Channel Catfish Pathogen Edwardsiella ictaluri. Journal of Applied Microbiology 104:1790-1796.
Utilization of a rapid DNA-based assay for molecular verification of channel catfish, blue catfish, F1 hybrid, and backcross offspring at serveral life stages Reprint Icon -
Waldbieser, G.C., Bosworth, B.G. 2008. Utilization of a rapid DNA-based assay for molecular verification of channel catfish, blue catfish, F1 hybrid, and backcross offspring at serveral life stages. North American Journal of Aquaculture. 70:388-395.
Utilization of microarray technology for functional genomics in ictalurid catfish -
Liu, Z., Li, R.W., Waldbieser, G.C. 2008. Utilization of microarray technology for functional genomics in ictalurid catfish. Journal of Fish Biology. 72:2377-2390.
Cocaine- and Amphetamine-Regulated Transcript (CART) Messenger RNA Expression is Regulated by Food Intake in the Brain of the Channel Catfish (Ictalurus punctatus) -
Kobayashi, Y., Peterson, B.C., Waldbieser, G.C. 2008. Cocaine- and Amphetamine-Regulated Transcript (CART) Messenger RNA Expression is Regulated by Food Intake in the Brain of the Channel Catfish (Ictalurus punctatus). Aquaculture America Conference. P: 184
ENDOCRINE RESPONSES OF FAST AND SLOW GROWING FAMILIES OF CHANNEL CATFISH ICTALURUS PUNCTATUS -
Peterson, B.C., Small, B.C., Waldbieser, G.C., Bosworth, B.G. 2008. Endocrine responses of fast and slow growing families of channel catfish. North American Journal of Aquaculture 70:240-250.
Gene-Based Markers Could Aid Selective Breeding -
Peterson, B.C., Small, B.C., Waldbieser, G.C., Bosworth, B.G. 2007. Gene-Based Markers Could Aid Selective Breeding. Global Aquaculture Advocate September/October p. 93.
Characterization of a BAC Library from Channel Catfish Ictalurus punctatus: Indications of High Rates of Evolution Among Teleost Genomes -
Wang, S., Xu, P., Thorsen, J., Zhu, B., De Jong, P.J., Waldbieser, G.C., Kucuktas, H., Liu, Z. 2007. Characterization of a BAC Library from Channel Catfish Ictalurus punctatus: Indications of High Rates of Evolution Among Teleost Genomes. Marine Biotechnology 9:701-711.
Effect of carp pituitary extract and luteinizing hormone releasing analog hormone on reproductive indices and spawning of 3-year-old channel catfish -
Barrero, M., Small, B.C., Waldbieser, G.C., D'Abramo, L., Hanson, L., Kelly, A. 2007. Effect of carp pituitary extract and luteinizing hormone releasing analog hormone on reproductive indices and spawning of 3-year-old channel catfish. North American Journal of Aquaculture. 70:138-146.
A First Generation Bac-Based Physical Map of the Channel Catfish Genome -
Quiniou, S.M., Waldbieser, G.C., Duke, M.V. A first generation bac-based physical map of the channel catfish genome. Biomed Central (BMC) Genomics.
Definition of the USDA103 Strain of Channel Catfish (Ictalurus punctatus) -
Waldbieser, G.C., Wolters, W.R. 2007. Definition of the USDA103 Strain of Channel Catfish (Ictalurus punctatus). Animal Genetics. 38:180-183.
POLY I:C INHIBITS THE EXPRESSION OF CHANNEL CATFISH VIRUS IMMEDIATE-EARLY GENE ORF 1 AT EARLY TIMES AFTER INFECTION -
Silverstein, P.S., Li, R.W., Murdock, C.A., Waldbieser, G.C. 2007. Poly i:c inhibits the expression of channel catfish virus immediate-early gene orf 1 at early times after infection. Fish and Shellfish Immunology 23:479-484.
Structure of the Catfish IGH Locus: Analysis of the Region Including the Single Functional IGHM Gene -
Bengten, E., Quiniou, S.M., Hikima, J., Waldbieser, G.C., Warr, G.W., Miller, N.W., Wilson, M. 2006. Structure of the Catfish IGH Locus: Analysis of the Region Including the Single Functional IGHM Gene. Immunogenetics 58:831-844.
Production and Utilization of a High-Density Oligonucleotide Microarray in Channel Catfish, Ictalurus punctatus -
Li, R.W., Waldbieser, G.C. 2006. Production and Utilization of a High-Density Oligonucleotide Microarray in Channel Catfish, Ictalurus punctatus. Biomed Central (BMC) Genomics 2006, vol. 7:134.
Channel catfish, Ictalurus punctatus, CD4-like molecules -
Edholm, E.S., Stafford, J.L., Quiniou, S.M., Waldbieser, G.C., Miller, N.W., Bengten, E., Wilson, M. 2007. Channel catfish, Ictalurus punctatus, CD4-like molecules. Developmental and Comparative Immunology 32:172-187.
IMMUNE RESPONSES OF CATFISH EXPOSED TO EDWARDSIELLA ICTALURI -
Bilodeau, A.L., Waldbieser, G.C. 2005. Immune responses of catfish exposed to edwardsiella ictaluri. American Fishery Society (Fish Health Section) Proceedings. July 2005. p.27.
REDUCTION IN CHANNEL CATFISH HEPATIC GROWTH HORMONE RECEPTOR EXPRESSION IN RESPONSE TO FOOD DEPRIVATION AND EXOGENOUS CORTISOL -
Small, B.C., Murdock, C.A., Waldbieser, G.C., Peterson, B.C. 2006. Reduction in channel catfish hepatic growth hormone receptor expression in response to food deprivation and exogenous cortisol. Domestic Animal Endocrinology 31:340-356.
IN VIVO AND IN VITRO CYP1B MRNA EXPRESSION IN CHANNEL CATFISH -
Willett, K.L., Ganesan, S., Patel, M., Metzger, C., Quiniou, S.M., Waldbieser, G.C., Scheffler, B.E. 2005. In vivo and in vitro cyp1b mrna expression in channel catfish. Marine Environmental Research.
The Nucleotide Targets of Somatic Mutation and the Role of Selection in Immunoglobulin Heavy Chains of a Teleost Fish -
Yang, F., Waldbieser, G.C., Lobb, C. 2006. The Nucleotide Targets of Somatic Mutation and the Role of Selection in Immunoglobulin Heavy Chains of a Teleost Fish. Journal of Immunology 176:1655-1667.
Molecular Characterization of the Insulin-Like Growth Factor-I (IGF-I) Gene in Channel Catfish (Ictalurus punctatus) -
Clay, L.A., Wang, S.Y., Wolters, W.R., Peterson, B.C., Waldbieser, G.C. 2005. Molecular Characterization of the Insulin-Like Growth Factor-i (IGF-I) Gene in Channel Catfish (Ictalurus punctatus). Biochimica et Biophysica Acta - Gene Structure and Expression. 1731(3):139-148.
GENOMIC CHARACTERIZATION AND EXPRESSION ANALYSIS OF THE BACULOVIRAL IAP REPEAT CONTAINING 2 (BIRC2) GENE IN CHANNEL CATFISH, ICTALURUS PUNCTATUS -
Li, R.W., Silverstein, P.S., Waldbieser, G.C. 2005. Genomic characterization and expression analysis of the baculoviral iap repeat containing 2 (birc2) gene in channel catfish, ictalurus punctatus. Animal Genetics 36:537-539.
Stability of reference genes for real-time PCR analyses in channel catfish (Ictalurus punctatus) tissues under varying physiological conditions -
Small, B.C., Murdock, C.A., Bourgeois, A.L., Peterson, B.C., Waldbieser, G.C. 2006. Stability of reference genes for real-time PCR analyses in channel catfish (Ictalurus punctatus) tissues under varying physiological conditions. Comparative Biochemistry and Physiology. 151:296-304.
Isolation and Enrichment of Abundant Microsatellites From A Channel Catfish (Ictalurus punctatus) Brain CDNA Library -
Nonneman, D., Waldbieser, G.C. 2005. Isolation and Enrichment of Abundant Microsatellites from a Channel Catfish (Ictalurus punctatus) Brain cDNA Library. Animal Biotechnology. 16:103-116.
ASSIGNMENT OF IMMUNE-RELATED GENES TO THE CHANNEL CATFISH, ICTALURUS PUNCTATUS, GENETIC MAP -
Karsi, A., Wolters, W.R., Waldbieser, G.C. 2005. Assignment of immune-related genes to the channel catfish, ictalurus punctatus, genetic map. Animal Genetics 36:502-506.
GENOMIC ORGANIZATION AND EXPRESSION OF THE NATURAL KILLER CELL ENHANCING FACTOR (NKEF) GENE IN CHANNEL CATFISH, ICTALURUS PUNCTATUS (RAFINESQUE) -
Li, R.W., Waldbieser, G.C. 2006. Genomic organization and expression of the natural killer cell enhancing factor (nkef) gene in channel catfish, ictalurus punctatus (rafinesque). Fish and Shellfish Immunology 20:72-82.
LOCALIZATION OF XBAI REPETITIVE ELEMENTS TO CHANNEL CATFISH CENTROMERES VIA FLUORESCENCE IN SITU HYBRIDIZATION -
Quiniou, S.M., Wolters, W.R., Waldbieser, G.C. 2005. Localization of xbai repetitive elements to channel catfish centromeres via fluorescence in situ hybridization. Animal Genetics 36:353-354.
ASSIGNMENT OF XBAI REPETITIVE ELEMENTS TO CHANNEL CATFISH CENTROMERES USING FISH -
Quiniou, S.M., Wolters, W.R., Waldbieser, G.C. Assignment of xbai repetitive elements to channel catfish centromeres using fish. Animal Genetics.
GENOMIC STRUCTURE OF THE PROOPIOMELANOCORTIN GENE AND EXPRESSION DURING TEMPORAL STRESS IN CHANNEL CATFISH, ICTALURUS PUNCTATUS -
Karsi, A., Waldbieser, G.C., Small, B.C., Wolters, W.R. 2005. Genomic structure of the proopiomelanocortin gene and expression during temporal stress in channel catfish, Ictalurus punctatus. General and Comparative Endocrinology.
MOLECULAR CLONING, GENOMIC ORGANIZATION AND FUNCTIONAL CHARACTERIZATION OF CHANNEL CATFISH GROWTH HORMONE RECEPTOR: CHANGES IN HEPATIC GHR MRNA EXPRESSION FOLLOWING FASTING AND FEEDING EXOGENOUS CORTISOL -
Small, B.C., Waldbieser, G.C., Murdock, C.A., Peterson, B.C. Molecular cloning, genomic organization and functional characterization of channel catfish growth hormone receptor: Changes in hepatic GHR mRNA expression following fasting and feeding exogenous cortisol. Proc. XV International Conference of Comparative Endocrinology, Boston, MA. p. 120.
MOLECULAR CLONING OF CHANNEL CATFISH STEROIDOGENIC FACTOR-1 AND THE EFFECTS OF EXOGENOUS LHRH TREATMENT ON EXPRESSION -
Murdock, C.A., Small, B.C., Waldbieser, G.C. 2005. Molecular cloning of channel catfish steroidogenic factor-1 and the effects of exogenous LHRH treatment on expression. Proc. XV International Conference of Comparative Endocrinology, Boston, MA. p. 101.
Linkage Mapping of the Channel Catfish Proopiomelanocortin (POMC) Gene -
Karsi, A., Waldbieser, G.C. 2005. Linkage Mapping of the Channel Catfish Proopiomelanocortin (POMC) Gene. Animal Genetics 36:171-173.
EFFECTS OF RECOMBINANT BOVINE GROWTH HORMONE (RBGH; POSILAC) ON GROWTH AND MRNA EXPRESSION OF IGF-I AND IGF-II IN CHANNEL CATFISH (ICTALURUS PUNCTATUS) -
Peterson, B.C., Waldbieser, G.C., Bilodeau, A.L. 2005. Effects of recombinant bovine somatotropin on growth and abundance of mRNA for IGF-I and IGF-II in channel catfish (Ictalurus punctatus). Journal of Animal Science 83:816-824.
CHANNEL CATFISH VIRUS DISEASE AND NWAC103 CATFISH -
Tucker, C., Silverstein, P.S., Camus, A., Bilodeau, A.L., Wise, D., Waldbieser, G.C. 2005. Channel catfish virus disease and NWAC103 catfish. The Catfish Journal 19(5):8.
ACTIVATION OF TLR3 AND TLR5 IN CHANNEL CATFISH EXPOSED TO VIRULENT EDWARDSIELLA ICTALURI -
Bilodeau, A.L., Waldbieser, G.C. 2005. Activation of tlr3 and tlr5 in channel catfish exposed to virulent edwardsiella ictaluri. Developmental and Comparative Immunology 29:713-721.
IGF-I AND IGF-II MRNA EXPRESSION IN SLOW AND FAST GROWING FAMILIES OF USDA103 CHANNEL CATFISH (ICTALURUS PUNCTATUS) -
Peterson, B.C., Waldbieser, G.C., Bilodeau, A.L. 2004. IGF-I and IGF-II mRNA expression in slow and fast growing families of USDA103 channel catfish (Ictalurus punctatus). Comparative Biochemistry and Physiology 139:317-323.
ACTIVATION OF TLR3 AND TLR5 IN CHANNEL CATFISH EXPOSED TO VIRULENT EDWARDSIELLA ICTALURI -
Bilodeau, A.L., Waldbieser, G.C. 2004. Activation of TLR3 and TLR5 in channel catfish exposed to virulent Edwardsiella ictaluri. American Society for Microbiology Conference on Functional Genomics and Bioinformatics Approaches to Infectious Disease. p. 38.
CLONING AND CHARACTERIZATION OF MYOGENIC REGULATORY GENES IN THREE ICTALURID CATFISH SPECIES -
Waldbieser, G.C., Bosworth, B.G. 2004. Cloning and characterization of myogenic regulatory genes in three Ictalurid catfish species. Animal Genetics 35:425-430.
MHC RFLP analyses in channel catfish full-sibling families: identification of the role of MHC molecules in spontaneous allogeneic cytotoxic responses -
Quiniou, S., Wilson, M., Bengten, E., Waldbieser, G.C., Clem, L.W., Miller, N.W. 2004. MHC RFLP analyses in channel catfish full-sibling families: identification of the role of MHC molecules in spontaneous allogeneic cytotoxic responses. Developmental and Comparative Immunology. 29(5):457-467.
Development of Type I Markers in Channel Catfish Through Intron Sequencing -
Serapion, J., Waldbieser, G.C., Wolters, W.R., Liu, Z. 2004. Development of Type I Markers in Channel Catfish Through Intron Sequencing. Animal Genetics 35:463-466.
Analysis of a Catfish Gene Resembling Interleukin-8: CDNA Cloning, Gene Structure, and Expression After Infection with Edwardsiella ictaluri -
Chen, L., He, C., Baoprasertkul, P., Xu, P., Li, P., Serapion, J., Waldbieser, G.C., Wolters, W.R., Liu, Z. 2005. Analysis of a Catfish Gene Resembling Interleukin-8: CDNA Cloning, Gene Structure, and Expression After Infection with Edwardsiella ictaluri. Developmental and Comparative Immunology 29:135-142.
MUSCLE AND LIVER IGF-I MRNA EXPRESSION AND PLASMA IGF-I LEVELS IN CHANNEL CATFISH ADMINISTERED RBGH OVER TIME -
Peterson, B.C., Waldbieser, G.C. 2004. Muscle and liver IGF-I mRNA expression and plasma IGF-I levels in channel catfish administered rbGH over time. Abstract, 2004 ADSA-ASAS-PSA Joint Annual Meeting. St. Louis, MO, July 25-29, 2004, p. 194.
EVALUATION OF THE TRANSCRIPTOME RESPONSE OF CHANNEL CATFISH TO ENTERIC SEPTICEMIA OF CATFISH -
Arnizaut, A., Waldbieser, G.C., Scheffler, B.E., Bengten, E., Wilson, M., Wolters, W.R., Hanson, L. 2004. Evaluation of the transcriptome response of channel catfish to enteric septicemia of catfish. 55th Annual Meeting of the Animal Disease Research Workers in Southern States/6th Annual Meeting of the Southern Conference of Researchers in Aquatic Diseases. Biloxi, MS. p. 28.
Molecular Cloning of Proopiomelanocortin cDNA and Multi-Tissue mRNA Expression in Channel Catfish -
Karsi, A., Waldbieser, G.C., Small, B.C., Liu, Z., Wolters, W.R. 2004. Molecular Cloning of Proopiomelanocortin cDNA and Multi-Tissue mRNA Expression in Channel Catfish. General and Comparative Endocrinology. 137:312-321.
PARTIAL CLONING OF T-CELL RECEPTOR ALPHA (TCRA) GENE AND ASSIGNMENT TO TCRA AND TCRB GENES TO THE CATFISH LINKAGE MAP -
Karsi, A., Waldbieser, G.C. 2004. Partial cloning of t-cell receptor alpha (TCRa) gene and assignment to TCRa and TCRb genes to the catfish linkage map. Animal Genetics 35:150-151.
RAPID DEVELOPMENT OF GENE-TAGGED MICROSATELLITE MARKERS FROM BAC CLONES OF CHANNEL CATFISH, ICTALURUS PUNCTATUS, AND RAINBOW TROUT, ONCORHYNCHUS MYKISS -
Waldbieser, G.C., Karsi, A., Gahr, S.A., Rexroad III, C.E. 2003. Rapid development of gene-tagged microsatellite markers from bac clones of channel catfish, ictalurus punctatus, and rainbow trout, oncorhynchus mykiss. Genetics in Aquaculture Symp. VII. Nov 9-15, 2003. p.22.
SEQUENCE AND MAP POSITION FOR CHANNEL CATFISH (ICTALURUS PUNCTATUS)MYOGENIN, MYOD, FOLLISTATIN, AND MYOSTATIN GENES -
Bosworth, B.G., Waldbieser, G.C. 2004. Sequence and map position for channel catfish (ictalurus punctatus)myogenin, myod, follistatin, and myostatin genes. Annual International Plant & Animal Genome Conference, San Diego, CA, Jan. 11-15, 2004. p. 658.
Rapid Development of Gene-Tagged Microsatellite Markers From BAC Clones Using Anchored TAA-Repeat Primers -
Waldbieser, G.C., Quiniou, S.M.A., Karsi, A. 2003. Rapid Development of Gene-Tagged Microsatellite Markers from BAC Clones Using Anchored TAA-Repeat Primers. Biotechniques. 35:976-979.
EFFECTS OF RECOMBINANT BOVINE GROWTH HORMONE (RBGH;POSILAC) ON GROWTH AND MRNA EXPRESSION OF IGF-I AND IGF-II IN CHANNEL CATFISH -
Peterson, B.C., Waldbieser, G.C., Bilodeau, A.L. 2004. Effects of recombinant bovine growth hormone (rbgh;posilac) on growth and mrna expression of igf-i and igf-ii in channel catfish. Annual Meeting of Society of Integrative and Comparative Biology. New Orleans, LA. p. 347.
IGF-II MRNA EXPRESSION IN SLOW AND FAST GROWING FAMILIES OF NWAC103 CHANNEL CATFISH -
Peterson, B.C., Waldbieser, G.C., Bilodeau, A.L. 2004. IGF-II mRNA expression in slow and fast growing families of NWAC103 channel catfish. World Aquaculture Society Meeting. Honolulu, HI. p. 466.
Structure, Genomic Organization, and Phylogenetic Implications of Six New VH Families in the Channel Catfish -
Yang, F., Ventura-Holman, T., Waldbieser, G.C., Lobb, C. 2003. Structure, Genomic Organization, and Phylogenetic Implications of Six New VH Families in the Channel Catfish. Molecular Immunology. 40:247-260.
COMPLETE SEQUENCE AND CHARACTERIZATION OF THE CHANNEL CATFISH MITOCHONDRIAL GENOME -
Waldbieser, G.C., Bilodeau, A.L., Nonneman, D.J. 2003. Complete sequence and characterization of the channel catfish mitochondrial genome. DNA Sequence 14:265-277.
Construction and characterization of a BAC library from a gynogenetic channel catfish, Ictalurus punctatus -
Quiniou, S., Katagiri, T., Miller, N.W., Wilson, M., Wolters, W.R., Waldbieser, G.C. 2003. Construction and characterization of a BAC library from a gynogenetic channel catfish, Ictalurus punctatus. Genetics Selection Evolution. 35(6):673-683.
EFFECT OF POSTSPAWNING FEEDING ON REPRODUCTION IN CHANNEL CATFISH -
Chatakondi, N., Yant, R., Waldbieser, G.C., Wolters, W.R. 2002. Effect of postspawning feeding on reproduction in channel catfish. Global Aquaculture Advocate 5(2):16-17.
MOLECULAR AND IMMUNOLOGICAL CHARACTERIZATION OF GYNOGENETIC CHANNEL CATFISH -
DEVELOPMENT OF MOLECULAR MARKERS IN CHANNEL CATFISH, ICTALURUS PUNCTATUS -
USE OF MICROSATELLITE LOCI FOR GENETIC IMPROVEMENT OF CHANNEL CATFISH, ICTALURUS PUNCTATUS -
USE OF DNA MARKERS TO IDENTIFY SELECTED STRAINS OF CHANNEL CATFISH -
DEVELOPMENT OF GENETICALLY SUPERIOR LINES OF COMMERCIAL CHANNEL CATFISH THROUGH SELECTIVE BREEDING -
DEVELOPMENT OF A CHANNEL CATFISH GENETIC MAP -
FISH IDENTIFICATION AND ANALYSIS OF GENETIC DIVERSITY USING MICROSATELLITE DNA MARKERS -
FLOW CYTOMETRIC SPERM SORTING AND PCR TO CONFIRM SEPARATION OF X- AND Y- CHROMOSOME BEARING BOVINE SPERM -
Last Modified: 8/26/2016
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