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United States Department of Agriculture

Agricultural Research Service

Related Topics

Chunxian Chen
Fruit and Nut Research
Horticulture

Phone: (478) 956-6467
Fax: (478) 956-2929

21 DUNBAR ROAD
I-75 & GA HWY 49
BYRON , GA 31008

Projects
Breeding Stone Fruit Adapted to the Production Environment of the Southeastern United States
Appropriated (D)
  Accession Number: 425019

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Draft genome sequence of Fusicladium effusum, cause of pecan scab -
Bock, C.H., Chen, C., Yu, F., Stevenson, K.L., Wood, B.W. 2016. Draft genome sequence of Fusicladium effusum, cause of pecan scab. Standards in Genomic Sciences. 11:36.
Peach fruit set and buttoning after spring frost -
Chen, C., Okie, W.R., Beckman, T.G. 2016. Peach fruit set and buttoning after spring frost. HortScience. 51(7):801-814.
Characterization of microsatellites in Fusicladium effusum, cause of pecan scab -
Comparison of fruit characters and volatile components in peach-to-nectarine mutants -
Chen, C., Bai, J., Okie, W.R., Plotto, A. 2016. Comparison of fruit characters and volatile components in peach-to-nectarine mutants. Euphytica. 209(2):409-418.
Metagenomics characterization of wood decay fungi colonized in peach limb heartwood -
Chen, C., Bock, C.H., Hotchkiss, M.W., Garbelotto, M.M., Cottrell, T.E. 2016. Metagenomics characterization of wood decay fungi colonized in peach limb heartwood. Plant and Animal Genome Conference. 22:224.
Cybridization of grapefruit with 'Dancy' mandarin leads to improved fruit characteristics -
Satpute, A., Chen, C., Gmitter, F., Ling, P., Yu, O., Grosser, M., Chase, C., Grosser, J. 2015. Cybridization of grapefruit with 'Dancy' mandarin leads to improved fruit characteristics. Journal of the American Society for Horticultural Science. 140(5):427-435.
Fusicladium effusum draft genome sequence -
Bock, C.H., Chen, C., Yu, F., Hotchkiss, M.W., Wood, B.W. 2015. Fusicladium effusum draft genome sequence. Genbank. GeneBank accession: PRJNA285422.
Genomic and genotyping characterization of haplotype-based polymorphic microsatellites in Prunus -
Chen, C., Bock, C.H., Beckman, T.G., Wood, B.W., Okie, W.R. 2015. Genomic and genotyping characterization of haplotype-based polymorphic microsatellites in Prunus. Journal of Genetics and Genome Research. 2:014.
Observation and identification of wood-decay fungi from the heartwood of peach tree limbs in central Georgia, USA -
Development of microsatellite markers for Fusicladium effusum, the causal agent of pecan scab -
Bock, C.H., Chen, C., Stevenson, K.L., Wood, B.W. 2015. Development of microsatellite markers for Fusicladium effusum, the causal agent of pecan scab. Phytopathology. 105(Suppl. 4):S4.17.
Observation and identification of wood decay fungi from the heartwood of peach tree limbs in central Georgia, USA -
Chen, C., Bock, C.H., Hotchkiss, M.W., Garbelotto, M.M., Cottrell, T.E. 2015. Observation and identification of wood decay fungi from the heartwood of peach tree limbs in central Georgia, USA. European Journal of Plant Pathology. 143(1):11-23.
Novel peach flower types in a segregating population from ‘Helen Borchers’ Reprint Icon -
Chen, C., Okie, W.R. 2015. Novel peach flower types in a segregating population from ‘Helen Borchers’. Journal of the American Society for Horticultural Science. 140(2):172–177.
Pigments in fruits and vegetables: genomics and dietetics Reprint Icon -
Chen, C. 2015. Pigments in fruits and vegetables: genomics and dietetics. Pigments in Fruits and Vegetables: Genomics and Dietetics. 227 p.
Overview of plant pigments Reprint Icon -
Chen, C. 2015. Overview of plant pigments. Pigments in Fruits and Vegetables: Genomics and Dietetics. p. 1-8.
Sequence alignment status and amplicon size difference affecting EST-SSR primer performance and polymorphism Reprint Icon -
2015. Sequence alignment status and amplicon size difference affecting EST-SSR primer performance and polymorphism. Plant and Animal Genome Conference. 22:224.
Genetic variability among populations of Fusicladium species from different host trees and geographic locations in the USA Reprint Icon -
Chen, C., Bock, C.H., Brannen, P.M., Adaskaveg, J.E., Hotchkiss, M.W., Brewer, M.T., Wood, B.W. 2014. Genetic variability among populations of Fusicladium species from different host trees and geographic locations in the USA. Mycological Progress. 13(4):1179–1190.
Comparison of carotenoid accumulation and biosynthetic gene expression between Valencia and Rohde Red Valencia sweet oranges Reprint Icon -
Wei, X., Chen, C., Yu, Q., Gady, A., Yu, Y., Liang, G., Gmitter, F.J. 2014. Comparison of carotenoid accumulation and biosynthetic gene expression between Valencia and Rohde Red Valencia sweet oranges. Plant Science. 227(1):28–36.
Genome-wide characterization and selection of expressed sequence tag simple sequence repeat primers for optimized marker distribution and reliability in peach Reprint Icon -
Chen, C., Bock, C.H., Okie, W., Gmitter, F.J., Jung, S., Main, D., Beckman, T.G., Wood, B.W. 2014. Genome-wide characterization and selection of expressed sequence tag simple sequence repeat primers for optimized marker distribution and reliability in peach. Tree Genetics and Genomes. 10(5): 1271-1279.
Sequence analysis reveals genomic factors affecting EST-SSR primer performance and polymorphism Reprint Icon -
Chen, C., Bock, C.H., Beckman, T.G. 2014. Sequence analysis reveals genomic factors affecting EST-SSR primer performance and polymorphism. Molecular Genetics and Genomics. 289(6): 1147-1156.
Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication -
Wu, A.G., Prochnik, S., Jenkins, J., Salse, J., Hellsten, U., Murat, F., Perrier, X., Ruiz, M., Scalabrin, S., Terol, J., Takita, M.A., Roksar, D., Labadie, K., Paulain, J., Cauloux, A., Jabbari, K., Cattonaro, F., Fabbro, C.D., Pinosio, S., Zuccolo, A., Chapman, J., Grimwood, J., Tadeo, F.R., Estornell, L.H., Munoz-Sanz, J.V., Ibanez, V., Herrero-Ortega, A., Aleza, P., Perez-Perez, J., Ramon, D., Brunel, D., Luro, F., Chen, C., Farmerie, W.G., Desany, B., Kodira, C., Mohiuddin, M., Harkins, T., Fredrikson, K., Burns, P., Lomsadze, A., Borodovsky, M., Reforgiato, G., Freita-Astua, J., Quetier, F., Navarro, L., Roose, M., Wincker, P., Schmutz, J., Morgante, M., Machado, M.A., Talon, M., Jaillon, O., Ollitrault, P., Gmitter, F. 2014. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nature Biotechnology. 32(7):656-662.
Assessment of long-term peach evaluation data reveals fruit trait distribution and selection tendencies -
Cybrids between Dancy tangerine (Citrus reticulata Blanca) and Ruby Red grapefruit (C. paradisi Mafc.) for improvement of citrus fruit traits [abstract] -
Satpute, A.D., Grosser, J.W., Chen, C., Gmitter Jr., F.G., Ling, P., Yu, Q., Grosser, M.R., Chase, C.D. 2014. Cybrids between Dancy tangerine (Citrus reticulata Blanca) and Ruby Red grapefruit (C. paradisi Mafc.) for improvement of citrus fruit traits [abstract]. American Society of Horticulture Science Meeting. Paper No. 258.
Identification of genes associated with low furanocoumarin content in grapefruit Reprint Icon -
Chen, C., Yu, O., Wei, X., Cancalon, P.F., Gmitter Jr., F.G. 2015. Identification of genes associated with low furanocoumarin content in grapefruit. Genome. 57(10):537-545.
Integrated profiling of Furanocoumarins (FC) in Grapefruit hybrids toward selection of low FC varieties Reprint Icon -
Chen, C., Gmitter, F.J., Cancalon, P., Greenblatt, D. 2015. Integrated profiling of Furanocoumarins (FC) in Grapefruit hybrids toward selection of low FC varieties. Acta Horticulturae. 1065:427-431.
Investigating the Parentage of ‘Orri’ and ‘Fortune’ Mandarin Hybrids Reprint Icon -
Barry, G.H., Gmitter, F.J., Chen, C., Roose, M.L., Federici, C.T., Mccollum, T.G. 2015. Investigating the Parentage of ‘Orri’ and ‘Fortune’ Mandarin Hybrids. Acta Horticulturae. 1065:449-456.
Comparative genetic mapping between clementine, pummelo and sweet orange and the interspecicic structure of the Clementine genome Reprint Icon -
Ollitrault, P., Terol, J., Chen, C., Federici, C., Lotfy, S., Hippolyte, I., Ollitrault, F., Berard, A., Chauveau, A., Cuenca, J., Costantino, G., Kacar, Y.A., Mu, L., Garcia-Lor, A., Curk, F., Froelicher, Y., Aleza, P., Boland, A., Billot, C., Navarro, L., Luro, F., Roose, M.L., Gmitter Jr., F.G., Talon, M., Brunel, D. 2015. Comparative genetic mapping between clementine, pummelo and sweet orange and the interspecicic structure of the Clementine genome. Acta Horticulturae. 1065:561-573.
New genetic tools to improve citrus fruit quality and drive consumer demand -
Novel expression patterns of carotenoid pathway-related gene in citrus leaves and maturing fruits Reprint Icon -
Wei, X., Chen, C., Yu, Q., Gady, A., Yu, Y., Liang, G., Gmitter, F.G. 2014. Novel expression patterns of carotenoid pathway-related gene in citrus leaves and maturing fruits. Tree Genetics and Genomes. 10: 439-448.
Novel expression patterns of carotenoid pathway-related gene in citrus leaves and maturing fruits Reprint Icon -
Wei, X., Chen, C., Yu, Q., Gady, A., Yu, Y., Liang, G., Gmitter, F.J. 2014. Novel expression patterns of carotenoid pathway-related gene in citrus leaves and maturing fruits. Tree Genetics and Genomes. 10(3):439-448.
Expressed haplotypes and polymorphisms in prunus species Reprint Icon -
Chen, C., Jung, S., Main, D. 2014. Expressed haplotypes and polymorphisms in prunus species. International Plant and Animal Genome IX Conference. 22:222.
Mining and comparison of haplotype-based expressed sequence tag single nucleotide polymorphisms among citrus cultivars Reprint Icon -
Chen, C., Gmitter, F.G. 2013. Mining and comparison of haplotype-based expressed sequence tag single nucleotide polymorphisms among citrus cultivars. Biomed Central (BMC) Genomics. 14:746.
Mining and comparison of haplotype-based expressed sequence tag single nucleotide polymorphisms among citrus cultivars -
Chen, C., Gmitter, F.J. 2013. Mining and comparison of haplotype-based expressed sequence tag single nucleotide polymorphisms among citrus cultivars. Biomed Central (BMC) Genomics. www.biomedcentral.com/1471-2164/14/746.
Cytological and molecular characterization of three gametoclones of citrus clementina -
Germana, M., Aleza, P., Carrera, E., Chen, C., Chiancone, G., Costantino, B., Dambier, D., Deng, X., Federici, C.T., Froelicher, Y., Guo, W., Ibabez, V., Juarez, J., Kwok, K., Luro, F., Machado, M., Naranjo, M.A., Navarro, L., Ollitrault, P., Rios, G., Roose, M.L., Talon, M., Xu, Q., Gmitter, F.G. 2013. Cytological and Molecular Characterization of Three Gametoclones of Citrus clementina. Biomed Central (BMC) Plant Biology. 13:129.
Characteristics of genetic variability among isolates of Fusicladium species from peach, almond and pecan in the USA -
Last Modified: 5/2/2016
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