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United States Department of Agriculture

Agricultural Research Service

DAVID FANG

Supervisory Research Geneticist


Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Next Generation Genetic Mapping of the Ligon-lintless-2 (Li2) Locus in Upland Cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal) - (25-Jul-14)
Quantitative trait loci analysis of fiber quality traits using a random-mated recombinant inbred population in Upland cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Fang, D.D., Jenkins, J.N., Deng, D.D., McCarty Jr, J.C., Li, P., Wu, J. 2014. Quantitative trait loci analysis of fiber quality traits using a random-mated recombinant inbred population in Upland cotton (Gossypium hirsutum L.). Biomed Central (BMC) Genomics. 15:397.
Independent replication of mitochondrial genes supports the transcriptional program in developing fiber cells of cotton (Gossypium hirsutum L.). - (Peer Reviewed Journal)
Thyssen, G.N., Song, X., Naoumkina, M.A., Kim, H.J., Fang, D.D. 2014. Independent replication of mitochondrial genes supports the transcriptional program in developing fiber cells of cotton (Gossypium hirsutum L.). Gene. 544:41-48.
The U.S. National Cotton Germplasm Collection – its Contents, Preservation, Characterization, and Evaluation - (Book / Chapter)
Percy, R.G., Frelichowski, J.E., Arnold, M., Campbell, B.T., Dever, J., Fang, D.D., Hinze, L.L., Main, D., Scheffler, J.A., Sheehan, M., Ulloa, M., Yu, J., Yu, J. 2014. The U.S. National Cotton Germplasm Collection – its Contents, Preservation, Characterization, and Evaluation. In: Abdurakhmonov, I. Editor. World Cotton Germplasm Resources. Rijeka, Croatia: InTech. 167-201. Available: http://www.intechopen.com/books/world-cotton-germplasm-resources/the-u-s-national-cotton-germplasm-collection-its-contents-preservation-characterization-and-evaluation.
The Li2 mutation results in reduced subgenome expression bias in elongating fibers of allotetraploid cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Naoumkina, M.A., Thyssen, G.N., Fang, D.D., Hinchliffe, D.J., Florane, C.B., Yeater, K.M., Page, J.J., Udall, J.A. 2014. The Li2 mutation results in reduced subgenome expression bias in elongating fibers of allotetraploid cotton (Gossypium hirsutum L.). PLoS One. 9(3):e90830.
Identification of cotton fiber quality quantitative trait loci using intraspecific crosses derived from two near-isogenic lines differing in fiber bundle strength. - (Peer Reviewed Journal)
Islam, M.S., Zeng, L., Delhom, C.D., Song, X., Kim, H.J., Li, P., Fang, D.D. 2014. Identification of cotton fiber quality QTLs using intraspecific crosses derived from two near isogenic lines differing in fiber bundle strength. Molecular Breeding. DOI 10.1007/s11032-014-0040-4.
Functional analyses of cotton (Gossypium hirsutum L.) immature fiber (im) mutant reveal that fiber cell wall development is associated with sensitivity to stress. - (Peer Reviewed Journal)
Kim, H.J., Tang, Y., Moon, H.S., Delhom, C.D., Fang, D.D. 2013. Functional analyses of cotton (Gossypium hirsutum L.) immature fiber (im) mutant reveal that fiber cell wall development is associated with sensitivity to stress. Biomed Central (BMC) Genomics. 14:889.
Quantitative trait locus analysis of Verticillium wilt resistance in an introgressed recombinant inbred population of Upland cotton - (Peer Reviewed Journal)
Fang, H., Zhou, H., Sanogo, S., Lipka, A.E., Fang, D.D., Percy, R.G., Hughs, S.E., Jones, D.C., Gore, M.A., Zhang, J. 2014. Quantitative trait locus analysis of Verticillium wilt resistance in an introgressed recombinant inbred population of Upland cotton. Molecular Breeding. 33:709-720.
Linkage Map Construction and QTL Analysis of Agronomic and Fiber Quality Traits in Cotton. - (Peer Reviewed Journal)
Gore, M.A., Fang, D.D., Poland, J.A., Zhang, J., Percy, R.G., Cantrell, R.G., Thyssen, G.N. 2014. Linkage Map Construction and QTL Analysis of Agronomic and Fiber Quality Traits in Cotton.. The Plant Genome. 7(1):1-10.
Genetic mapping of non-target site resistance to a sulfonylurea herbicide (Envoke®) in Upland cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Thyssen, G.N., McCarty Jr, J.C., Li, P., Jenkins, J.N., Fang, D.D. 2014. Genetic mapping of non-target site resistance to a sulfonylurea herbicide (Envoke®) in Upland cotton (Gossypium hirsutum L.). Molecular Breeding, 33:341-348.
A transcript profiling approach reveals an abscisic acid specific glycosyltransferase (UGT73C14) induced in developing fiber of Ligon lintless-2 mutant of cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Gilbert, M.K., Bland, J.M., Shockey, J.M., Cao, H., Hinchliffe, D.J., Fang, D.D., Naoumkina, M.A. 2013. A transcript profiling approach reveals an abscisic acid specific glycosyltransferase (UGT73C14) induced in developing fiber of Ligon lintless-2 mutant of cotton (Gossypium hirsutum L.). PLoS One. 8(9):e75268.
A transcript profiling approach reveals an abscisic acid specific glycosyltransferase (UGT73C14) induced in developing fiber of Ligon lintless-2 mutant of cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Gilbert, M.K., Bland, J.M., Shockey, J.M., Cao, H., Hinchliffe, D.J., Fang, D.D., Naoumkina, M.A. 2013. A transcript profiling approach reveals an abscisic acid specific glycosyltransferase (UGT73C14) induced in developing fiber of Ligon lintless-2 mutant of cotton (Gossypium hirsutum L.). PLoS One. 8 (9):e75268.
Transcript profiling by microarray and marker analysis of the short cotton (Gossypium hirsutum L.) fiber mutant Ligon lintless-1 (Li1) - (Peer Reviewed Journal)
Gilbert, M.K., Turley, R.B., Kim, H.J., Li, P., Thyssen, G.N., Tang, Y., Delhom, C.D., Naoumkina, M.A., Fang, D.D. 2013. Transcript profiling by microarray and marker analysis of the short cotton (Gossypium hirsutum L.) fiber mutant Ligon lintless-1 (Li1). Biomed Central (BMC) Genomics. 14:403.
Comparative Transcriptome Analysis of Short Fiber Mutants Ligon-lintless 1 And 2 Reveals Common Mechanisms Pertinent to Fiber Elongation in Cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Gilbert, M.K., Kim, H.J., Tang, Y., Naoumkina, M.A., Fang, D.D. 2014. Comparative Transcriptome Analysis of Short Fiber Mutants Ligon-lintless 1 And 2 Reveals Common Mechanisms Pertinent to Fiber Elongation in Cotton (Gossypium hirsutum L.). PLoS One. 9:e95554.
Integrated metabolomics and genomics analysis provides new insights into the fiber elongation process in Ligon lintless-2 (Li2) mutant cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Naoumkina, M.A., Hinchliffe, D.J., Turley, R.B., Bland, J.M., Fang, D.D. 2013. Integrated metabolomics and genomics analysis provides new insights into the fiber elongation process in Ligon lintless-2 (Li2) mutant cotton (Gossypium hirsutum L.). Biomed Central (BMC) Genomics. 14:155,_DOI:10.1186/1471-2164-14-155.
A microsatellite-based genome-wide analysis of genetic diversity and linkage disequilibrium in Upland cotton (Gossypium hirsutum L.) cultivars from major cotton-growing countries - (Peer Reviewed Journal)
Fang, D.D., Hinze, L.L., Percy, R.G., Li, P., Deng, D.D., Thyssen, G.N. 2013. A microsatellite-based genome-wide analysis of genetic diversity and linkage disequilibrium in Upland cotton (Gossypium hirsutum L.) cultivars from major cotton-growing countries. Euphytica. 191:391-401.
Molecular diversity among G. hirsutum accessions in the Gossypium Diversity Reference Set - (Abstract Only) - (09-Jan-13)
A high density consensus genetic map of tetraploid cotton that integrates multiple component maps through molecular marker redundancy check - (Peer Reviewed Journal)
Blenda, A., Fang, D.D., Rami, J., Garsmeur, O., Luo, F., Lacape, J. 2012. A high density consensus genetic map of tetraploid cotton that integrates multiple component maps through molecular marker redundancy check. PLoS One. 7(9):e45739.
Molecular markers associated with the immature fiber (im) gene affecting the degree of fiber cell wall thickening in cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Kim, H.J., Moon, H.S., Delhom, C.D., Zeng, L., Fang, D.D. 2013. Molecular markers associated with the immature fiber (im) gene affecting the degree of fiber cell wall thickening in cotton (Gossypium hirsutum L.). Theoretical and Applied Genetics. 126:23-31.
Addition of four-hundred fifty-five microsatellite marker loci to the high density Gossypium hirsutum TM-1 x G. barbadense 3-79 genetic map - (Peer Reviewed Journal)
Fang, D.D., Yu, J. 2012. Addition of four-hundred fifty-five microsatellite marker loci to the high density Gossypium hirsutum TM-1 x G. barbadense 3-79 genetic map. Journal of Cotton Science. 16:229-248.
Cloning and expression analysis of novel Aux/IAA family genes in Gossypium hirsutum - (Peer Reviewed Journal)
Han,, X.Y., Xu, X.Y., Fang, D.D., Zhang, T.Z., Guo, W.Z. 2012. Cloning and expression analysis of novel Aux/IAA family genes in Gossypium hirsutum. Gene. 503:83-91.
Development of a core set of SSR markers for the characterization of Gossypium germplasm - (Peer Reviewed Journal)
Yu, J., Fang, D.D., Kohel, R.J., Ulloa, M., Hinze, L.L., Percy, R.G., Zhang, J., Chee, P., Scheffler, B.E., Jones, D.C. 2012. Development of a core set of SSR markers for the characterization of Gossypium germplasm. Euphytica. 187(2):203-213.
Genetic diversity in the U.S. Cotton Germplasm Collection as revealed by SSR markers - (Abstract Only) - (06-Jan-12)
Molecular tools for contemporary cotton breeding - (Abstract Only)
Yu, J., Fang, D.D., Abdurakhmonov, I.Y., Yu, S., Percy, R.G. 2012. Molecular tools for contemporary cotton breeding [abstract]. Proceedings of the Plant and Animal Genome Conference XX, January 14-18, 2012, San Diego, California. W543.
Cloning and characterization of homeologous cellulose synthase catalytic subunit 2 genes from allotetraploid cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Kim, H.J., Triplett, B.A., Zhang, H., Lee, M., Hinchliffe, D.J., Li, P., Fang, D.D. 2012. Cloning and characterization of homeologous cellulose synthase catalytic subunit 2 genes from allotetraploid cotton (Gossypium hirsutum L.). Gene. 494(2):181-189.
A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome - (Peer Reviewed Journal)
Yu, J., Kohel, R.J., Fang, D.D., Cho, J., Van Deynze, A., Ulloa, M., Hoffman, S.M., Pepper, A.E., Stelly, D.M., Jenkins, J.N., Saha, S., Kumpatla, S.P., Shah, M.R., Hugie, W.V., Percy, R.G. 2012. A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome. Genes, Genomes, Genetics. 2:43-58.
A combined functional and structural genomics approach identified an EST-SSR marker with complete linkage to the Ligon lintless-2 genetic locus in cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Hinchliffe, D.J., Turley, R.B., Naoumkina, M.A., Kim, H.J., Tang, Y., Yeater, K.M., Li, P., Fang, D.D. 2011. A combined functional and structural genomics approach identified an EST-SSR marker with complete linkage to the Ligon lintless-2 genetic locus in cotton (Gossypium hirsutum L.). Biomed Central (BMC) Genomics. 12:445.
Registration of the TM-1/NM24016 Cotton Recombinant Inbred Mapping Population - (Peer Reviewed Journal)
Gore, M.A., Percy, R.G., Zhang, J., Fang, D.D., Cantrell, R.G. 2012. Registration of the TM-1/NM24016 cotton recombinant inbred mapping population. Journal of Plant Registrations. 6(1). 1:4.
Improving Cotton (Gossypium hirsutum L.) Plant Resistance to Reniform Nematodes by Pyramiding Ren1 and Ren2 - (Peer Reviewed Journal)
Fang, D.D., Stetina, S.R. 2011. Improving Cotton (Gossypium hirsutum L.) Plant Resistance to Reniform Nematodes by Pyramiding Ren1 and Ren2. Plant Breeding. 130:673-678.
Elevated growing degree days influence transition stage timing during cotton (Gossypium hirsutum L.) fiber development and result in increased fiber strength - (Peer Reviewed Journal)
Hinchliffe, D.J., Meredith Jr, W.R., Delhom, C.D., Thibodeaux, D.P., Fang, D.D. 2011. Elevated growing degree days influence transition stage timing during cotton (Gossypium hirsutum L.) fiber development and result in increased fiber strength. Crop Science. 51:1683-1692. DOI: 10.2135/cropsci2010.10.0569.
Are Renari from Gossypium aridum and Renlon from G. longicalyx Duplicate Genes? - (Abstract Only)
Fang, D.D., Stetina, S.R. 2011. Are Renari from Gossypium aridum and Renlon from G. longicalyx Duplicate Genes?. National Cotton Council Beltwide Cotton Conference. CD ROM.
Preliminary assessment of the efficiency of a core marker set in revealing genetic diversity in the U.S. germplasm collection - (Abstract Only)
Percy, R.G., Fang, D.D., Hinze, L.L., Yu, J., Frelichowski, J.E., Scheffler, B.E., Gore, M.A. 2011. Preliminary assessment of the efficiency of a core marker set in revealing genetic diversity in the U.S. germplasm collection. In: Proceedings of the National Cotton Council Beltwide Cotton Conference, January 4-7, 2011, Atlanta, Georgia. 2011 CDROM.
Regulation of auxin on secondary cell wall cellulose biosynthesis in developing cotton fibers - (Abstract Only) - (05-Nov-10)
Functional analysis of Gossypium hirsutum cellulose synthase catalytic subunit 4 promoter in transgenic Arabidopsis and cotton tissues. - (Peer Reviewed Journal)
Kim, H.J., Murai, N., Fang, D.D., Triplett, B.A. 2010. Functional analysis of Gossypium hirsutum cellulose synthase catalytic subunit 4 promoter in transgenic Arabidopsis and cotton tissues. Plant Science. 180(2011);323-332.
Development of core SSR markers for Gossypium germplasm characterization - (Abstract Only)
Yu, J., Fang, D.D., Ulloa, M., Percy, R.G., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Cho, J., Campbell, B.T., Chee, P., Zhang, J., Abdurakhmonov, I., Abdukarimov, A., Jones, D.C. 2010. Development of core SSR markers for Gossypium germplasm characterization [abstract]. In: Proceedings of the National Cotton Council Beltwide Cotton Conferences, January 4-7, 2010, New Orleans, Louisiana. p. 811. CDROM.
Portable DNA markers tailored for systematic characterization of Gossypium germplasm - (Abstract Only)
Yu, J., Fang, D.D., Ulloa, M., Percy, R.G., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Cho, J., Campbell, B.T., Chee, P., Abdurakhmonov, I., Abdukarimov, A., Jones, D.C. 2010. Portable DNA markers tailored for systematic characterization of Gossypium germplasm [abstract]. In: Plant and Animal Genome Conference Proceedings, January 9-13, 2010, San Diego, California. P149.
A New SNP Haplotype associated with blue disease resistance gene in cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Fang, D.D., Xiao, J., Canci, P.C., Cantrell, R.G. 2009. A New SNP Haplotype associated with blue disease resistance gene in cotton (Gossypium hirsutum L.). Journal of Theoretical and Applied Genetics. 120:943-953.
Mapping a reniform nematode (Rotylenchulus reniformis) resistance locus introgressed from Gossypium aridum into upland cotton (G. hirsutum) - (Abstract Only) - (04-Nov-09)
A Snp Haplotype Associated with a Gene Resistant to Xanthomonas Axonopodis Pv. Malvacearum in Upland Cotton (Gossyium Hirsutum L.) - (Peer Reviewed Journal)
Xiao, J., Fang, D.D., Bhatti, M., Hendrix, B., Cantrell, R.G. 2009. A SNP Haplotype Associated with a gene resistant to Xanthomonas axonopodis pv. malvacearum in Upland Cotton (Gossyium hirsutum L.). Molecular Breeding.25(4):593-602
Identification and Genomic Location of a Reniform Nematode (Rotylenchulus reniformis) Resistance locus (Ren_ari) Introgressed from Gossypium aridum into Upland Cotton (G. hirsutum) - (Peer Reviewed Journal)
Romano, G.B., Sacks, E.J., Stetina, S.R., Robinson, A.F., Fang, D.D., Gutierrez, O., Scheffler, J.A. 2009. Identification and Genomic Location of a Reniform Nematode (Rotylenchulus reniformis) Resistance locus (Ren_ari) Introgressed from Gossypium aridum into Upland Cotton (G. hirsutum). Theoretical and Applied Genetics. 120:139-150
Reniform nematode (Rotylenchulus reniformis) resistance locus from Gossypium aridum identified and introgressed into upland cotton (G. hirsutum) - (Abstract Only)
Romano, G.B., Sacks, E.J., Stetina, S.R., Robinson, A.F., Fang, D.D., Gutierrez, O.A., Scheffler, J.A. 2009. Reniform nematode (Rotylenchulus reniformis) resistance locus from Gossypium aridum identified and introgressed into upland cotton (G. hirsutum). Journal of Nematology. 41(4):375-376.
New DNA Markers for the Use in Cotton (Gossypium spp.) Improvement - (Peer Reviewed Journal)
Xiao, J., Wu, K., Fang, D.D., Stelley, D.M., Yu, J., Cantrell, R.G. 2009. New DNA Markers for the Use in Cotton (Gossypium spp.) Improvement. Journal of Cotton Science. 13(2):75-157
Last Modified: 5/14/2010
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