Projects

Pseudomonas Syringae Systems Biology Appropriated (D)   Accession Number: 411677

Functional Organization of Biomolecular Networks Specific Cooperative Agreement (S)   Accession Number: 408020

Publications

Oligonucleotide Recombination in Bacteria - (Abstract)

Swingle, B.M., Costantino, N., Court, D., Bubunenko, M.G., Cartinhour, S.W. 2009. Oligonucleotide Recombination in Bacteria. Meeting Abstract. Vol 17:p. 28.

Oligo Recombination in Gram Negative Bacteria - (Abstract)

Swingle, B.M., Cartinhour, S.W., Court, D. 2009. Oligo Recombination in Gram Negative Bacteria. Molecular Genetics of Bacteria and Phage. p. 166.

Iron Concentration Limits Growth Rate and the Expression of Virulence Factors in hrp-Inducing Minimal Medium with Pseudomonas syringae - (Peer Reviewed Journal)

Kim, B., Park, J., Park, T., Bronstein, P., Schneider, D.J., Cartinhour, S.W., Shuler, M.L. 2009. Iron Concentration Limits Growth Rate and the Expression of Virulence Factors in hrp-Inducing Minimal Medium with Pseudomonas syringae. Applied and Environmental Microbiology. 25(9):2720-2726.

Investigating the role of two iron-regulated small RNAs of Pseudomonas syringae - (Abstract)

Bronstein, P., Filiatrault, M.J., Stodghill, P., Schneider, D.J., Cartinhour, S.W. 2009. Investigating the role of two iron-regulated small RNAs of Pseudomonas syringae. American Society for Microbiology. p. 20.

High-Throughput Identification of Transcriptional Start Sites in Pseudomonas syringae - (Abstract)

Filiatrault, M.J., Stodghill, P., Wang, W., Schweitzer, P., Grills, G., Cartinhour, S.W., Schneider, D.J. 2009. High-Throughput Identification of Transcriptional Start Sites in Pseudomonas syringae. American Society for Microbiology. p. 251.

Global transcriptional responses of Pseudomonas syringae DC3000 to changes in iron bioavailability in vitro - (Peer Reviewed Journal)

Bronstein, P., Filiatrault, M.J., Myers, C., Rutzke, M., Schneider, D.J., Cartinhour, S.W. 2008. Global transcriptional responses of Pseudomonas syringae DC3000 to changes in iron bioavailability in vitro. BMC Microbiology. 8:209.

Characterization of the PvdS-regulated promoter motif in Pseudomonas syringae pv. tomato DC3000 reveals regulon members and insights regarding PvdS function in other pseudomonads - (Peer Reviewed Journal)

Swingle, B.M., Thete, D., Moll, M., Myers, C., Schneider, D.J., Cartinhour, S.W. 2008. Characterization of the PvdS-regulated promoter motif in Pseudomonas syringae pv. tomato DC3000 reveals regulon members and insights regarding PvdS function in other pseudomonads. Molecular Microbiology. 68(4):871-889.

Identification and Characterization of iron-responsive regulatory elements in Pseudomonas syringae pv tomato DC3000 - (Abstract)

Bronstein, P., Filiatrault, M.J., Cartinhour, S.W. 2008. Identification and Characterization of iron-responsive regulatory elements in Pseudomonas syringae pv tomato DC3000. American Society for Microbiology Meeting.

Characterization of two small RNAs of Pseudomonas syringae DC3000 - (Abstract)

Filiatrault, M.J., Bronstein, P., Stodghill, P., Cartinhour, S.W. 2008. Characterization of two small RNAs of Pseudomonas syringae DC3000. American Society for Microbiology Meeting.

Extracytoplasmic Function (ECF) Sigma Factor Gene Regulation in Pseudomonas syringae: Integrated Molecular and Computational Characterization of PvdS-Regulated Promoters - (Abstract)

Swingle, B.M., Thete,, D., Moll, M., Myers,, C., Schneider, D.J., Cartinhour, S.W. 2007. Extracytoplasmic Function (ECF) Sigma Factor Gene Regulation in Pseudomonas syringae: Integrated Molecular and Computational Characterization of PvdS-Regulated Promoters. Molecular Genetics of Bacteria and Phage. p. 262.

Pyoverdine and beyond: PvdS dependent gene regulation in Pseudomonas syringae - (Abstract)

Swingle, B.M., Thete,, D., Moll, M., Myers,, C., Schneider, D.J., Cartinhour, S.W. Pyoverdine and beyond: PvdS dependent gene regulation in Pseudomonas syringae. American Society for Microbiology Conference. 159A:p. 90.

Shotgun Sequencing of the Pseudomonas syringae DC3000 Transcriptome - (Abstract)

Filiatrault, M.J., Bronstein, P., Stodghill, P., Declerck, G.A., Schneider, D.J., Cartinhour, S.W. 2007. Shotgun Sequencing of the Pseudomonas syringae DC3000 Transcriptome. American Society for Microbiology Conference. p. 20.

Global transcriptional responses of Pseudomonas syringae DC3000 to changes in iron bioavailability in vitro - (Abstract)

Bronstein, P., Filiatrault, M.J., Kim, B., Moll, M., Rutzke, M., Shuler, M., Schneider, D.J., Cartinhour, S.W. 2007. Global transcriptional responses of Pseudomonas syringae DC3000 to changes in iron bioavailability in vitro. American Society for Microbiology. p. 20.

Closing the circle on the discovery of genes encoding Hrp regulon members and type III secretion system effectors in the genomes of three model Pseudomonas syringae strains - (Review Article)

Lindeberg, M., Cartinhour, S.W., Myers, C., Schechter, L., Schneider, D.J., Collmer, A. 2006. Closing the circle on the discovery of genes encoding Hrp regulon members and type III secretion system effectors in the genomes of three model Pseudomonas syringae strains. Molecular Plant-Microbe Interactions. 19(11):1151-1158.

Bioinformatics-enabled identification of the HrpL regulon and type III secretion system effector proteins of Pseudomonas syringae pv. phaseolicola 1448A - (Peer Reviewed Journal)

Vencato, M., Tian, F., Alfano, J.R., Buell, C., Cartinhour, S.W., Declerck, G.A., Guttman, D.S., Stavrinides, J., Joardar, V., Lindeberg, M., Bronstein, P., Mansfield, J.W., Myers, C.R., Collmer, A., Schneider, D.J. 2006. Bioinformatics-enabled identification of the HrpL regulon and type III secretion system effector proteins of Pseudomonas syringae pv. phaseolicola 1448A. Molecular Plant-Microbe Interactions. 19(11):1193-1206.

Whole-Genome Expression Profiling Defines the Hrpl Regulon of Pseudomonas Syringae Pv. Tomato Dc3000, Allows DE Novo Reconstruction of the Hrp Cis Element, and Identifies Novel Co-Regulated Genes - (Peer Reviewed Journal)

Fereirra, A.O., Myers, C.R., Gordon, J., Martin, G.B., Vencato, M., Collmer, A., Wehling, M.D., Alfano, J.R., Moreno-Hagelsieb, G., Lamboy, W.F., Declerck, G.A., Schneider, D.J., Cartinhour, S.W. 2006. Whole-genome expression profiling defines the hrpl regulon of pseudomonas syringae pv. tomato dc3000, allows de novo reconstruction of the hrp cis element, and identifies novel co-regulated genes. Molecular Plant-Microbe Interactions. 19(11):1167-1179.

Identification of Twin-Arginine Translocation System in Pseudomonas Syringae and Its Contribution to Pathogenicity and Fitness - (Peer Reviewed Journal)

Bronstein, P., Marrichi, M., Cartinhour, S.W., Schneider, D.J., Delisa, M.P. 2005. Identification of twin-arginine translocation system in pseudomonas syringae and its contribution to pathogenicity and fitness. Journal of Bacteriology. 187(24):8450-8461.

Whole Genome Sequence Analysis of Pseudomonas Syringae Pv. Phaseolicola 1448a Reveals Divergence among Pathovars in Genes Involved in Virulence and Transposition - (Peer Reviewed Journal)

Joardar, V., Lindeberg, M., Jackson, R.W., Fraser, C.M., Chatterjee, A.K., Cartinhour, S.W., Schneider, D.J., Mansfield, J., Collmer, A., Buell, C.R. 2005. Whole genome sequence analysis of pseudomonas syringae pv. phaseolicola 1448a reveals divergence among pathovars in genes involved in virulence and transposition. Journal of Bacteriology. 187:6488-6498.

Complete Genome Sequence of the Plant Commensal Pseudomonas Fluorescens Pf-5: Insights into the Biological Control of Plant Disease - (Peer Reviewed Journal)

Paulsen, I.T., Press, C.M., Ravel, J., Kobayashi, D.Y., Myers, G., Mavrodi, D.V., Deboy, R.T., Seshadri, R., Ren, Q., Madupu, R., Dodson, R.J., Durkin, A.S., Brinkac, L.M., Daugherty, S.C., Sullivan, S.A., Rosovitz, M.J., Gwinn, M.L., Zhou, L., Schneider, D.J., Cartinhour, S.W., Nelson, W.C., Weidman, J., Watkins, K., Tran, K., Khouri, H., Pierson, E.A., Pierson, L.S., Thomashow, L.S., Loper, J.E. 2005. Complete genome sequence of the plant commensal pseudomonas fluorescens pf-5: insights into the biological control of plant disease. Nature Biotechnology. 23:873-878.

The Complete Genome Sequence of the Arabidopsis and Tomato Pathogen Pseudomonas Syringae Pv. Tomatodc3000 - (Peer Reviewed Journal)

BUELL, C.R., JOARDAR, V., D'ASCENZO, M., DEGN, W.L., RAMOS, A.R., ALFANO, J.R., CARTINHOUR, S.W., DELANEY, T.P., LAZAROWITZ, S.G., MARTIN, G.B., SCHNEIDER, D.J., COLLMER, A. THE COMPLETE GENOME SEQUENCE OF THE ARABIDOPSIS AND TOMATO PATHOGEN PSEUDOMONAS SYRINGAE PV. TOMATODC3000. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES. 2003. v. 100(18). p. 10181-10186.

A Graph-Theoretic Approach to Comparing and Integrating Genetic, Physical and Sequence-Based Maps - (Peer Reviewed Journal)

YAP, I.V., SCHNEIDER, D.J., KLEINBERG, J., MATTHEWS, D.E., CARTINHOUR, S.W., MCCOUCH, S.R. A GRAPH-THEORETIC APPROACH TO COMPARING AND INTEGRATING GENETIC, PHYSICAL AND SEQUENCE-BASED MAPS. GENETICS. 2003. V. 165. P. 2235-2247.

Development and Mapping of 2240 New Ssr Markers for Rice (Oryza Sativa L.) - (Peer Reviewed Journal)

MCCOUCH, S.R., TEYTELMAN, L., XU, Y., LOBOS, K.B., CLARE, K., WALTON, M., FU, B., MAGHIRANG, R., LI, Z., XING, Y., ZHANG, Q., KONO, I., YANO, M., FJELLSTROM, R.G., DECLERCK, G.A., CARTINHOUR, S.W., SCHNEIDER, D.J., WARE, D., STEIN, L. DEVELOPMENT AND MAPPING OF 2240 NEW SSR MARKERS FOR RICE (ORYZA SATIVA L.). DNA Research 9:199-207. 2002.

Development of 2,240 New Ssr Markers for Rice (Oryza Sativa) - (Peer Reviewed Journal)

MCCOUGH, S.R., TEYTELMAN, L., KONO, I., YANO, M., FJELLSTROM, R.G., DECLERCK, G.A., SCHNEIDER, D.J., CARTINHOUR, S.W., WARE, D., STEIN, L. DEVELOPMENT OF 2,240 NEW SSR MARKERS FOR RICE (ORYZA SATIVA). GENOME RESEARCH. 2002.

Gramene: Development and Integration of Trait and Gene Ontologies for Rice - (Peer Reviewed Journal)

JAISWAL, P., WARE, D., ZHAO, W., SCHMIDT, S., PAN, X., CLARK, K., TEYTELMAN, L., CARTINHOUR, S.W., STEIN, L., MCCOUCH, S. GRAMENE: DEVELOPMENT AND INTEGRATION OF TRAIT AND GENE ONTOLOGIES FOR RICE. COMPARATIVE AND FUNCTIONAL GENOMICS. 2002. v. 3(2). p. 132-136.

Gramene: a Resource for Comparative Grass Genomics - (Peer Reviewed Journal)

WARE, D., JAISWAL, P., CHANG, K., CLARK, K., TEYTELMAN, L., SCHMIDT, S., ZHAO, W., CARTINHOUR, S.W., MCCOUCH, S., STEIN, L. GRAMENE: A RESOURCE FOR COMPARATIVE GRASS GENOMICS. NUCLEIC ACIDS RESEARCH. 2002. v. 30(1). p. 103-105.