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United States Department of Agriculture

Agricultural Research Service

Related Topics

Angela Baldo
Dale Bumpers National Rice Research Center
Computational Biologist

Phone: (870) 672-9300
Fax: (870) 673-7581
2890 HWY 130 EAST
STUTTGART, AR, 72160

Projects
Management of Genetic Resources and Associated Information for Selected Vegetable Crops
Appropriated (D)
  Accession Number: 424541
Management of Apple, Cold-Hardy Grape, and Tart Cherry Genetic Resources and Associated Information
Appropriated (D)
  Accession Number: 424615
Breeding Apple Rootstocks Tolerant to Abiotic Stresses and Resistant to Pests and Diseases
Appropriated (D)
  Accession Number: 424948
Improving Fruit Quality, Disease Resistance, and Tolerance to Abiotic Stress in Grape
Appropriated (D)
  Accession Number: 425016
Genomic Approaches and Genetic Resources for Improving Rice Yield and Grain Quality
Appropriated (D)
  Accession Number: 425079
Using Genetic Approaches to Reduce Crop Losses in Rice Due to Biotic and Abiotic Stress
Appropriated (D)
  Accession Number: 425080
CHARACTERIZATION OF GENOMIC DIVERITY AND EVOLUTIONARY ORIGINS OF THE USDA-ARS MALUS GERMPLASM COLLECTION
Nonfunded Cooperative Agreement (N)
  Accession Number: 422432

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Genes responding to water deficit in apple (Malus × domestica Borkh.) - (Peer Reviewed Journal) - (06-May-14)
Application of genetic and spatial analyses to identify collection priorities for wild Malus species - (Abstract Only)
Volk, G.M., Richards, C.M., Henk, A.D., Baldo, A.M., Fazio, G., Chao, C.T. 2014. Application of genetic and spatial analyses to identify collection priorities for wild Malus species [abstract]. 7th International Rosaceae Genomics Conference. p. 84.
Characterization of eesistance gene analogues (RGAs) in apple (Malus 6domestica Borkh.) and their evolutionary history of the Rosaceae family - (Peer Reviewed Journal)
Perazzolli, M., Malacarne, G., Baldo, A.M., Righetti, L., Bailey, A., Fontana, P., Velasco, R., Malnoy, M. 2014. Characterization of eesistance gene analogues (RGAs) in apple (Malus 6domestica Borkh.) and their evolutionary history of the Rosaceae family. PLoS One. 9(2):e83844.
A phylogenomic analysis of the grape genus (Vitis) reveals broad reticulation and concurrent diversification during quaternary climate change - (Peer Reviewed Journal)
Wan, Y., Schwaninger, H.R., Baldo, A.M., Labate, J.A., Simon, C., Zhong, G. 2013. A phylogenomic analysis of the grape genus (Vitis) reveals broad reticulation and concurrent diversification during quaternary climate change. BMC Evlutionary Biology. 13:141.
Genome-wide survey of genetic diversity of apple using genotyping-by-sequencing - (Abstract Only)
Gardner, K., Schwaninger, H.R., Dann, S., Baldo, A.M., Chao, C.T., Fazio, G., Volk, G.M., Richards, C.M., Zhong, G., Myles, S. 2013. Genome-wide survey of genetic diversity of apple using genotyping-by-sequencing [abstract]. Annual International Plant & Animal Genome Conference. W248.
Putative resistance gene markers associated with quantitative trait loci for fire blight resistance in Malus 'Robusta 5' accessions - (Peer Reviewed Journal)
Norelli, J.L., Gardner, S., De Silva, N., Fazio, G., Peil, A., Malnoy, M., Homer, M., Bowatta, D., Carlisle, C., Wan, Y., Bassett, C.L., Baldo, A.M., Celton, J., Aldwinckle, H., Bus, V. 2012. Putative resistance gene markers associated with quantitative trait loci for fire blight resistance in Malus 'Robusta 5' accessions. Biomed Central (BMC) Plant Biology. 13:25.
Nitrate transporter genes in apple and the effect of water deficit on their expression - (Abstract Only)
Bassett, C.L., Baldo, A.M., Farrell, R.E. 2012. Nitrate transporter genes in apple and the effect of water deficit on their expression. [abstract]. American Society of Horticultural Science. p. 91.
Genotyping by sequencing in grape - stacks or tassel? - (Abstract Only) - (08-Dec-11)
AlleleCoder: a PERL script for coding codominant polymorphism data for PCA analysis - (Review Article)
Baldo, A.M., Francis, D., Caramante, M., Robertson, L.D., Labate, J.A. 2011. AlleleCoder: a PERL script for coding codominant polymorphism data for PCA analysis. Plant Genetic Resources: Characterization and Utilization. 10: 1-3.
Comparing alleles between wild and domesticated tomato - (Other)
Baldo, A.M., Robertson, L.D., Labate, J.A. 2010. Comparing alleles between wild and domesticated tomato. Plant Genome Conference Proceedings.
Phylogenetic relationships among Maloideae species - (Government Publication)
Volk, G.M., Richards, C.M., Baldo, A.M. 2010. Phylogenetic relationships among Maloideae species. Meeting Abstract. 5th International Rosaceae Genomics Conference, November 14-17, 2010. South Africa. pp. O52.
Candidate fire blight resistance genes in Malus identified with the use of genomic tools and approaches - (Abstract Only)
Norelli, J.L., Gardiner, S.E., Malnoy, M., Aldwinckle, H.S., Baldo, A.M., Bassett, C.L., Fazio, G., Horner, M.B., Celton, J., Borejsza-Wysocka, E., Bowatte, D.R., Carlisle, C.M., Lalli, D., Bus, V.G., Wisniewski, M.E. 2010. Candidate fire blight resistance genes in Malus identified with the use of genomic tools and approaches [abstract]. Fire Blight International Workshop. p. 42.
Diversity in wild apple species of Chinese origin - (Abstract Only)
Volk, G.M., Henk, A.D., Richards, C.M., Baldo, A.M., Forsline, P.L. 2010. Diversity in wild apple species of Chinese origin. Meeting Abstract. American Society for Horticultural Science annual conference, Palm Desert, CA August 2-5, 2010.
Comparative Gene Expression Of Architectural And Nutritional ESTs In Apple Root, Leaf And Stem Tissues - (Other)
Adhikary, D., Baldo, A.M., Fazio, G. 2010. Comparative Gene Expression Of Architectural And Nutritional ESTs In Apple Root, Leaf And Stem Tissues. Plant and Animal Genome Conference.
Characterization of alleles in a diversity panel of tomato - (Other)
Labate, J.A., Robertson, L.D., Baldo, A.M. 2009. Characterization of alleles in a diversity panel of tomato [abstract]. American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America Int'l Annual Meetings, Pittsburgh, PA. oral presentation 86-6.
Identification of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus x domestica) with Erwinia amylovora - (Peer Reviewed Journal)
Baldo, A.M., Norelli, J.L., Farrell, R., Bassett, C.L., Aldwinckle, H., Malnoy, M. 2010. Identification of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus x domestica) with Erwinia amylovora. Biomed Central (BMC) Plant Biology.
Multilocus sequence data reveal extensive departures from equilibrium in domesticated tomato (Solanum lycopersicum L.) - (Peer Reviewed Journal)
Labate, J.A., Robertson, L.D., Baldo, A.M. 2009. Multilocus sequence data reveal extensive departures from equilibrium in domesticated tomato (Solanum lycopersicum L.). Heredity 103:257-267.
Using functional genomics to identify molecular markers for fire blight resistance (Erwinia amylovora) in apple (Malus) - (Proceedings)
Norelli, J.L., Gardiner, S.E., Malnoy, M., Aldwinckle, H.S., Farrell, Jr, R.E., Horner, M., Celton, J., Baldo, A.M., Bowatta, D.R., Carlisle, C., Lalli, D., Bus, V., Bassett, C.L., Wisniewski, M.E. 2009. Using functional genomics to identify molecular markers for fire blight resistance (Erwinia amylovora) in apple (Malus). Acta Horticulturae. 839:415-420.
Parentage Analysis of Freedom Rootstock - (Peer Reviewed Journal)
Garris, A.J., Cousins, P.S., Ramming, D.W., Baldo, A.M. 2009. Parentage Analysis of Freedom Rootstock. American Journal of Enology and Viticulture. Am. J. Enol. Vitic. 60(3):357-361.
Resistance Gene Analogs in Six Genera of Rosaceae: A Family-wide Classification - (Abstract Only)
Baldo, A.M., Volk, G.M., Henk, A.D., Iezzoni, A., Olmstead, J.W., Aldwinckle, H.S., Weber, C., Samuelian, S., Malnoy, M. 2009. Resistance Gene Analogs in Six Genera of Rosaceae: A Family-wide Classification. Plant & Animal Genome XVII Conference. Annual Conference. January 10-14, 2009. San Diego, CA. pp.182. Meeting Abstract.
Est, Cosii, and Arbitrary Gene Markers Give Similar Estimates of Nucleotide Diversity in Cultivated Tomato (Solanum Lycopersicum) - (Peer Reviewed Journal)
Labate, J.A., Robertson, L.D., Wu, F., Tanksley, S.D., Baldo, A.M. 2009. EST, COSII, and arbitrary gene markers give similar estimates of nucleotide diversity in cultivated tomato (Solanum lycopersicum). Journal of Theoretical and Applied Genetics. 118:1005-1014.
Nomenclature and Genetic Relationships of Apples and Pears from Terceira Island - (Peer Reviewed Journal)
Bassil, N.V., Hummer, K.E., Postman, J.D., Fazio, G., Baldo, A.M., Armas, I., Williams, R. 2008. Nomenclature and Genetic Relationships of Apples and Pears from Terceira Island. Genetic Resources and Crop Evolution (2009). 56:339-352.
Isolation and Linkage Mapping of NBS-LRR Resistance Gene Analogs in Red Raspberry (Rubus idaeus L.) and Classification Among 269 Rosaceae NGS-LRR Genes - (Peer Reviewed Journal)
Samuelian, S.K., Baldo, A.M., Pattison, J.A., Weber, C. 2008. Isolation and Linkage Mapping of NBS-LRR Resistance Gene Analogs in Red Raspberry (Rubus idaeus L.) and Classification Among 269 Rosaceae NGS-LRR Genes. Electronic Online First Article http://www.springerlink.com/content/n423jnx741586448.
Identification of gene-specific markers for resistance to Erwinia amylovora (fire blight) in Malus (apple) by a functional genomics approach - (Abstract Only)
Norelli, J.L., Gardiner, S.E., Malnoy, M., Aldwinckle, H.S., Farrell, Jr, R.E., Horner, M., Celton, J., Baldo, A.M., Bowatta, D.R., Carlisle, C.M., Lalli, D., Bassett, C.L., Wisniewski, M.E. 2008. Identification of gene-specific markers for resistance to Erwinia amylovora (fire blight) in Malus (apple) by a functional genomics approach. American Phytopathological Society. 98:5114.
Apple root expressed sequence tags (ESTs) responding to water deficit - (Abstract Only)
Bassett, C.L., Wisniewski, M.E., Baldo, A.M., Korban, S., Gasic, K., Farrell, Jr., R.E. Apple root expressed sequence tags (ESTs) responding to water deficit. HortScience. Vol. 43, pg. 1079. 2008
Identification and mapping of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus x domestica) with Erwinia amylovora - (Proceedings)
Malnoy, M., Baldo, A.M., Borejsza-Wysocka, E., Norelli, J.L., Farrell, Jr., R.E., Bassett, C.L., Aldwinckle, H.S. 2008. Identification and mapping of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus x domestica) with Erwinia amylovora. Acta Horticulturae. 793:195-199.
Rapid transcriptional response of Malus to Erwinia amylovora infection - (Proceedings)
Norelli, J.L., Farrell, Jr., R.E., Bassett, C.L., Baldo, A.M., Lalli, D., Aldwinckle, H.S., Wisniewski, M.E. 2008. Rapid transcriptional response of Malus to Erwinia amylovora infection. Acta Horticulturae. 793: 189-194.
Using functional genomics to develop tools to breed fire blight resistant apples Reprint Icon - (Abstract Only)
Norelli, J.L., Bassett, C.L., Farrell, Jr., R.E., Baldo, A.M., Malnoy, M., Borejsza-Wysocka, E., Lalli, D., Korban, S.S., Gardiner, S.E., Wisniewski, M.E., Celton, J., Aldwinckle, H.S. 2008. Using functional genomics to develop tools to breed fire blight resistant apples. Plant and Animal Genome Conference. P. 455.
High-efficiency generation of RNAi mutants of apple by use of multi-vector transformation Reprint Icon - (Abstract Only)
Borejsza-Wysocka, E., Norelli, J.L., Bassett, C.L., Farrell, Jr., R.E., Baldo, A.M., Aldwinckle, H.S. 2008. High-efficiency generation of RNAi mutants of apple by use of multi-vector transformation. Plant and Animal Genome Conference. p 453.
Identification and mapping of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus x domestica) with Erwinia amylovora Reprint Icon - (Abstract Only)
Malnoy, M., Norelli, J.L., Bassett, C.L., Farrell, Jr., R.E., Baldo, A.M., Borejsza-Wysocka, E., Carlisle, C.M., Gardiner, S.E., Celton, J., Aldwinckle, H.S. 2008. Identification and mapping of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus x domestica) with Erwinia amylovora. Plant and Animal Genome Conference. p. 454.
Differential expression of genes in apple during gradual water deficit conditions - (Abstract Only)
Bassett, C.L., Wisniewski, M.E., Baldo, A.M., Artlip, T.S., Farrell, Jr., R.E. Differential expression of genes in apple during gradual water deficit conditions. Plant and Animal Genome Conference Abstracts Vol. 16: pg 136, 2008.
Tomato - (Book / Chapter)
Labate, J.A., Grandillo, S., Fulton, T., Munos, S., Caicedo, A., Peralta, I., Ji, Y., Chetelat, R., Scott, J.W., Gonzalo, M.J., Francis, D., Yang, W., Van Der Knaap, E., Baldo, A.M., Smith-White, B., Mueller, L., Prince, J., Blanchard, N., Storey, D., Stevens, M., Robbins, M., Wang, J., Liedl, B., Oconnell, M., Stommel, J.R., Aoki, K., Iijima, Y., Slade, A., Hurst, S., Loeffler, D., Steine, M., Vafeados, D., Mcguire, C., Freeman, C., Amen, A., Goodstal, J., Facciotti, D., Van Eck, J., Causse, M. 2007. Tomato. Book Chapter. In: Kole, C. editor. Genome mapping and molecular breeding in plants. Volume 5 Vegetables. NY. Springer Publishing Co. p. 1-125.
Functional genomic analysis of apple (Malus) EST's associated with fire blight (Erwinia amylovora) - (Abstract Only)
Norelli, J.L., Borejsza-Wysocka, E., Baldo, A.M., Aldwinckle, H.S., Bassett, C.L., Farrell, R.E., Malnoy, M., Lalli, D., Korban, S.S., Gasic, K., Wisniewski, M.E. 2007. Functional genomic analysis of apple (Malus) EST's associated with fire blight (Erwinia amylovora). Phytopathology. 97:5185.
Rapid transcriptional response of apple to fire blight disease revealed by cDNA suppression subtractive hybridization analysis - (Peer Reviewed Journal)
Norelli, J.L., Farrell, Jr., R.E., Bassett, C.L., Baldo, A.M., Lalli, D., Aldwinckle, H.S., Wisniewski, M.E. 2008. Rapid transcriptional response of apple to fire blight disease revealed by cDNA suppression subtractive hybridization analysis. Tree Genetics & Genomics. 5: p. 27-40.
The Distribution of Genetic Variation in Cultivated Tomato - (Proceedings) - (01-Dec-06)
Snp Validation and Genetic Diversity in Cultivated Tomatoes and Grapes - (Proceedings) - (01-Dec-06)
Computational Identification of Candidate Genes Involved in Response to Fire Blight in Apples - (Proceedings) - (01-Dec-06)
Computational Reclassification of Resistance Gene Analogs in Rosaceae Based on the NBS-LRR Domain - (Proceedings) - (01-Dec-06)
Identification of genes expressed in apple (Malus x domestica) in response to Erwinia amylovora infection - (Abstract Only)
Farrell, Jr., R.E., Bassett, C.L., Norelli, J.L., Baldo, A.M., Aldwinckle, H., Wisniewski, M.E. 2007. Identification of genes expressed in apple (Malus x domestica) in response to Erwinia amylovora infection [abstract]. Plant and Animal Genome Conference. p. 218.
Functional genomic response of apple to fire blight - (Abstract Only)
Norelli, J.L., Bassett, C.L., Farrell, Jr., R.E., Baldo, A.M., Malnoy, M., Borejsza-Wysocka, E., Lalli, D., Korban, S.S., Gasic, K., Wisniewski, M.E., Aldwinckle, H.S. 2007. Functional genomic response of apple to fire blight. Plant and Animal Genome XV Conference. Final Abstract Guide, P 465, pg 217.
Transcriptional response in apple to fire blight disease - (Abstract Only)
Farrell, R., Norelli, J.L., Bassett, C.L., Baldo, A.M., Aldwinckle, H., Wisniewski, M.E. 2006. Transcriptional response in apple to fire blight disease. In: Abstracts of 23rd meeting of the Mid Atlantic Plant Molecular Biology Society Conference, August 17, 2006, Laurel, Maryland. 35 p.
Using Functional and Applied Genomics to Identify Genes That Confer Either Resistance Or Susceptibility to Fire Blight - (Abstract Only)
Norelli, J.L., Bassett, C.L., Leder, E.H., Wisniewski, M.E., Baldo, A.M., Farrell, Jr, R.E., Borejsza-Wysocka, E., Malnoy, M., Aldwinckle, H.S., Gasic, K., Korban, S.S. 2006. Using functional and applied genomics to identify genes that confer either resistance or susceptibility to fire blight. American Phytopathological Society Annual Meeting. Phytopathology (2006)96:S86.
Rapid Genome Response of Malus to Infection by Erwinia amylovora - (Abstract Only) - (01-Jun-06)
Polymorphism among EST-based markers in tomato - (Abstract Only) - (13-Apr-06)
Computational Analysis of Putative Resistance Gene Analogs in Raspberry - (Abstract Only)
Baldo, A.M., Samuelian, S., Weber, C. 2006. Computational analysis of putative resistance gene analogs in raspberry. Meeting Abstract. 3rd International Rosaceae Genomics Conference. Pg. 65.
Status of USDA Vitis Germplasm Collection in Geneva, New York with Accessions Primarily of North American Origin - (Abstract Only)
Forsline, P.L., Cousins, P.S., Simon, C.J., Baldo, A.M., Schwaninger, H.R., Stover, E.W. 2006. Status of usda vitis germplasm collection in geneva, new york with accessions primarily of north american origin. Meeting Abstract. 9th International Conference on Grape Genetics and Breeding.
Sean: Snp Prediction and Display Program Utilizing Est Sequence Clusters - (Peer Reviewed Journal)
Huntley, D., Baldo, A.M., Johri, S., Sergot, M. 2005. Sean: snp prediction and display program utilizing est sequence clusters. Bioinformatics. 10.1093/bioinformatics/btk006.
Temporal Response of Apple (Malus) to Fire Blight Disease Reprint Icon - (Proceedings)
Norelli, J.L., Farrell, R.E., Bassett, C.L., Baldo, A.M., Aldwinckle, H.S., Wisniewski, M.E. 2006. Temporal response of apple (malus) to fire blight disease. In: Proceedings of the Plant and Animal Genome Conference, January 14-18, 2006, San Diego, CA. 227 p.
Highly Polymorphic Genes in Cultivated Tomato - (Peer Reviewed Journal)
Baldo, A.M., Robertson, L.D., Labate, J.A. 2005. Highly polymorphic genes in cultivated tomato. Hortscience. 40:999.
Tomato Snp Discovery by Est Mining and Resequencing - (Peer Reviewed Journal)
Labate, J.A., Baldo, A.M. 2005. Tomato snp discovery by est mining and resequencing. Molecular Breeding. 16:343-349.
High-Throughput Snp Prediction in Tomatoes Based on Ests - (Proceedings)
Baldo, A.M., Huntley, D., Robertson, L.D., Labate, J.A. 2005. High-throughput snp prediction in tomatoes based on ests. Tomato Breeders Roundtable Proceedings. p. 7 In Final Abstracts Guide, Plant and Animal Genome XIII, San Diego, Ca.
Use of Sequence-Based Polymorphisms for Studing Genetic Diversity of Winter Squash - (Proceedings)
Robertson, L.D., Baldo, A.M., Sheffer, S.M., Labate, J.A. 2005. Use of sequence-based polymorphisms for studing genetic diversity of winter squash. Meeting Abstract. p. 153 In Final Abstracts Guide, Plant & Animal Genome XII, San Diego, CA.
Discovery of Highly Polymorphic Genes in Tomato Cultivars - (Peer Reviewed Journal)
Labate, J.A., Baldo, A.M. Discovery of highly polymorphic genes in tomato cultivars. Molecular Breeding. 2005.
Prediction of Single Nucleotide Polymorphisms in Domestic Tomato: How Useful Is Est Sequence Diversity? - (Proceedings)
Baldo, A.M., Labate, J.A., Robertson, L.D., 2004. Prediction of single nucleotide polymorphisms in domestic tomato: how useful is EST sequence diversity?. 12th International Conference on Intelligent Systems for Molecular Biology (ISMB 2004)
A Search for Molecular Diversity in Tomato - (Proceedings)
BALDO, A.M., LABATE, J.A., ROBERTSON, L.D. A SEARCH FOR MOLECULAR DIVERSITY IN TOMATO. PLANT AND ANIMAL GENOME ABSTRACTS. 2004.
Mining the Est Database and Genomic Sequences for Snp Discovery in Vitis - (Proceedings)
OWENS, C.L., BALDO, A.M. MINING THE EST DATABASE AND GENOMIC SEQUENCES FOR SNP DISCOVERY IN VITIS. PLANT AND ANIMAL GENOME ABSTRACTS. 2004.
Sequence-Based Amplified Polymorphisms Are Useful for Studying Genetic Diversity of Winter Squash - (Proceedings)
ROBERTSON, L.D., BALDO, A.M., LABATE, J.A. SEQUENCE-BASED AMPLIFIED POLYMORPHISMS ARE USEFUL FOR STUDYING GENETIC DIVERSITY OF WINTER SQUASH. PLANT AND ANIMAL GENOME ABSTRACTS. 2004.
A Search for Molecular Diversity in Tomato - (Proceedings)
BALDO, A.M., LABATE, J.A., ROBERTSON, L.D. A SEARCH FOR MOLECULAR DIVERSITY IN TOMATO. New England Molecular Evoluationary Biologists Meeting, Storrs, CT. 2003. . 2003.
Polymorphism Prediction - (Proceedings)
BALDO, A.M., LABATE, J.A. POLYMORPHISM PREDICTION. ISMB Intelligent Systems in Molecular Biology. 2003.
Genome-Wide Identification of Pseudomonas Syringae Pv. Tomato Dc3000 Promoters Controlled by the Hrpl Alternative Sigma Factor - (Peer Reviewed Journal)
FOUTS, D.E., BALDO, A.M., CARTINHOUR, S.W., LAZAROWITZ, S.G., MARTIN, G.B., REHM, A.H., SCHNEIDER, D.J., VAN DIJK, K., TANG, X., COLLMER, A. GENOME-WIDE IDENTIFICATION OF PSEUDOMONAS SYRINGAE PV. TOMATO DC3000 PROMOTERS CONTROLLED BY THE HRPL ALTERNATIVE SIGMA FACTOR. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES. 2002. v. 99(4). p. 2275-2280.
Last Modified: 8/22/2014
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