Projects

DETERMINATION AND CHARACTERIZATION OF UNINTENDED EFFECTS IN GENETICALLY MODIFIED FOOD CROPS Appropriated (D)   Accession Number: 420096

ANNOTATION AND ANALYSIS OF THE TOMATO FRUIT METABOLOME Nonfunded Cooperative Agreement (N)   Accession Number: 422288

Publications (Clicking on the reprint icon will take you to the publication reprint.)

Leveraging non-targeted metabolomic profiling via statistical genomics - (Peer Reviewed Journal)

Shen, M., Broeckling, C., Chu, E., Ziegler, G., Baxter, I.R., Prenni, J., Hoekenga, O. 2013. Leveraging non-targeted metabolomic profiling via statistical genomics. PLoS One. 8(2):e57667. Available: http://www.plosone.org/article/info:doi/10.1371/journal.pone.0057667

High bioavailable iron maize (Zea mays L.) developed through molecular breeding provides more absorbable iron in vitro and in vivo - (Peer Reviewed Journal)

Tako, E.N., Hoekenga, O., Kochian, L.V., Glahn, R.P. 2013. High bioavailable iron maize (Zea mays L.) developed through molecular breeding provides more absorbable iron in vitro and in vivo. Nutrition Journal. 12:3.

Proteomic analysis of differentially expressed proteins in the roots of columbia-0 and landsberg erecta ecotypes of arabidopsis thaliana in response to aluminum toxicity - (Peer Reviewed Journal)

Karuppanapandian, T., Rhee, S., Kim, E., Han, B., Hoekenga, O., Lee, G. 2012. Proteomic analysis of differentially expressed proteins in the roots of columbia-0 and landsberg erecta ecotypes of arabidopsis thaliana in response to aluminum toxicity. Canadian Journal of Plant Science. 92:1267-1282.

Ionomic characterization of maize kernels in the Intermated B73 x Mo17 (IBM) population - (Peer Reviewed Journal)

Baxter, I.R., Gustin, J.L., Settles, M.A., Hoekenga, O. 2012. Ionomic characterization of maize kernels in the Intermated B73 x Mo17 (IBM) population. Crop Science. 53:208-220.

Weighted correlation network analysis (WGCNA) applied to the tomato fruit metabolome - (Peer Reviewed Journal)

Dileo, M., Strahan, G.D., Hoekenga, O. 2011. Weighted correlation network analysis (WGCNA) applied to the tomato fruit metabolome. PLoS One. 6(10):e26683. DOI: 10.1371/journal.pone.0026683.

Genomics of mineral nutrient biofortification: calcium, iron and zinc - (Book / Chapter) - (10-Aug-11)

Genetic and physiological analysis of iron content and bioavailability in maize kernels - (Peer Reviewed Journal)

Lung'Aho, M., Mwaniki, A., Szalma, S.J., Hart, J., Rutzke, M., Kochian, L.V., Glahn, R.P., Hoekenga, O. 2011. Genetic and physiological analysis of iron content and bioavailability in maize kernels. PLoS One. 6(6):e20429. DOI:10.1371/journal.pone.0020429.

Iron biofortification of maize grain - (Peer Reviewed Journal)

Hoekenga, O., Lung'Aho, M., Tako, E., Kochian, L.V., Glahn, R.P. 2011. Iron biofortification of maize grain. Plant Genetic Resources: Characterization and Utilization. 1-3. Available: http://journals.cambridge.org/

Ionomics of the Maize Nested Association Mapping Panel - (Abstract Only) - (31-Jul-10)

Physiological and genetic characterization of end-of-day far-red light response in maize seedlings - (Peer Reviewed Journal)

Dubois, P., Olsefski, G.T., Hoekenga, O., Flint Garcia, S.A., Brutnell, T. 2010. Physiological and genetic characterization of end-of-day far-red light response in maize seedlings. Plant Physiology. 10.1104/pp.110.159830.

Mechanisms of aluminum tolerance - (Book / Chapter)

Hoekenga, O., Magalhaes, J. 2011. Mechanisms of aluminum tolerance. In: Oliveira, A.C., Varshney, R., editors. Root Genomics. Verlag Berlin, Heidelberg: Springer. p. 133-153.

Ionomics of the Maize Nested Association Mapping Panel - (Abstract Only) - (06-Jun-10)

Natural Genetic Variation in Selected Populations of Arabidopsis thaliana is Associated with Ionomic Differences - (Peer Reviewed Journal)

Buescher, E., Achberger, T., Amusan, I., Giannini, A., Ochsenfeld, C., Rus, A., Lahner, B., Hoekenga, O., Yakubova, E., Harper, J., Guerinot, M., Zhang, M., Salt, D.E., Baxter, I.R. 2010. Natural Genetic Variation in Selected Populations of Arabidopsis thaliana is Associated with Ionomic Differences. PLoS One. Available: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0011081

Association and linkage analysis of aluminum tolerance genes in maize - (Peer Reviewed Journal)

Krill, A.M., Kirst, M., Kochian, L.V., Buckler Iv, E.S., Hoekenga, O. 2010. Association and linkage analysis of aluminum tolerance genes in maize. PLoS One. 5(4):e9958. DOI: 10.1371/journal.pone.0009958.

Joint linkage association analysis of aluminum tolerance in maize - (Proceedings)

Hoekenga, O., Buckler Iv, E.S., Kirst, M., Krill, A., Lyi, S., Magalhaes, J., Maron, L., Kochian, L.V. 2009. Joint linkage association analysis of aluminum tolerance in maize. Symposium Proceedings. Proceedings of the 7th International Symposium on Plant-Soil Interaction at Low pH, October 5-10, 2009, Guangzhou, China. p. 136-137.

Iron biofortification of maize grain - (Abstract Only)

Hoekenga, O., Lung'Aho, M., Kochian, L.V., Glahn, R.P. 2009. Iron biofortification of maize grain. [abstract]. 51st Annual Maize Genetics Conference.

Recent Advances on the Molecular Basis of Crop Aluminum Resistance - (Proceedings)

Kochian, L.V., Magalhaes, J., Liu, J., Hoekenga, O., Pineros, M. 2009. Recent Advances on the Molecular Basis of Crop Aluminum Resistance. Meeting Proceedings.

Maize aluminum tolerance - (Book / Chapter)

Kochian, L.V., Hoekenga, O., Magalhaes, J., Pineros, M. 2009. Maize aluminum tolerance. In: Bennetzen, J.L., Hale, E.S.C., editors. Handbook of Maize: It's Biology. New York, NY: Springer. p. 367-380.

Using metabolomics to estimate unintended effects in transgenic crop plants: problems, promises and opportunities - (Peer Reviewed Journal)

Hoekenga, O. 2008. Using metabolomics to estimate unintended effects in transgenic crop plants: problems, promises and opportunities. Journal of Biomolecular Techniques. (3):159-166.

Characterization of AtALMT1 expression in aluminum inducible malate release and its role for rhizotoxic stress in Arabidopsis - (Peer Reviewed Journal)

Kobayashi, Y., Hoekenga, O., Ito, H., Nakashima, M., Saito, S., Shaff, J., Maron, L., Pineros, M., Kochian, L.V., Koyama, H. 2008. Characterization of AtALMT1 expression in aluminum inducible malate release and its role for rhizotoxic stress in Arabidopsis. Plant Physiology. 145:843-852.

Genetic and biochemical analysis of iron bioavailability in maize - (Abstract Only)

Hoekenga, O., Mwankini, A., Buckler Iv, E.S., Glahn, R.P., Kochian, L.V. 2007. Genetic and biochemical analysis of iron bioavailability in maize. American Society of Agronomy Meetings. Volume 52:102.

Genetic and biochemical analysis of iron bioavailability in maize - (Abstract Only)

Hoekenga, O., Mwaniki, A., Buckler Iv, E.S., Glahn, R.P., Kochian, L.V. 2007. Genetic and biochemical analysis of iron bioavailability in maize (abstract). Agronomy Society of America, Crop Science Society of America, Soil Science Society of America Meeting. Session 176:4

Joint linkage-association analysis of aluminum tolerance in maize - (Abstract Only)

Hoekenga, O., Buckler Iv, E.S., Maron, L., Magalhaes, J., Kirst, M., Krill, A., Lyi, M., Rose, J., Thannhauser, T.W., Kochian, L.V. 2007. Joint linkage-association analysis of aluminum tolerance in maize [abstract]. Plant and Animal Genome VX Conference Abstracts. p. 55.

Molecular Cloning and Characterization of AltSB, A Major Aluminum Tolerance Gene in Sorghum - (Abstract Only)

Liu, J., Magalhaes, J., Guimaraes, C., Lana, U., Alves, V., Hoekenga, O., Shaff, J., Pineros, M., Wang, Y., Klein, P., Schaffert, R., Kochian, L.V. 2007. Molecular Cloning and Characterization of AltSB, A Major Aluminum Tolerance Gene in Sorghum [abstract]. Plant and Animal Genome VX Conference Abstracts. p. 59.

Positional Cloning and Characterization of AltSB, a Major Aluminum Tolerance Gene in Sorghum: Toward the Identification of the Molecular and Physiological basis of Allelic effects - (Abstract Only)

Magalhaes, J., Liu, J., Alves, V., Guimaraes, C., Wang, Y., Lana, U., Schaffert, R., Hoekenga, O., Klein, P., Kochian, L.V. 2007. Positional Cloning and Characterization of AltSB, a Major Aluminum Tolerance Gene in Sorghum: Toward the Identification of the Molecular and Physiological basis of Allelic effects[abstract]. Plant and Animal Genome VX Conference Abstracts. p. 58.

A NOVEL METHOD FOR QUANTITATIVE IN SITU HYBRIDISATION IN PLANTS REVEALS REGULATION OF A ZINC TRANSPORTER IN THE CD/ZN HYPERACCUMULATOR THLASPI CAERULESCENS (GANGES) - (Peer Reviewed Journal)

Kupper, H., Seib, L.O., Kochian, L.V. A novel method for quantitative in situ hybridisation in plants reveals regulation of a zinc transporter in the cd/zn hyperaccumulator thlaspi caerulescens (ganges). Plant Journal. 50:159-175.

Elucidating the Molecular Determinants of Aluminum Tolerance in Sorghum and Maize - (Abstract Only)

Kochian, L.V., Magalhaes, J., Liu, J., Hoekenga, O., Guimaraes, C., Alves, V., Maron, L., Shaff, J., Lyi, M., Schaffert, R. 2006. Elucidating the Molecular Determinants of Aluminum Tolerance in Sorghum and Maize [abstract]. Plant and Animal Genome VX Conference Abstracts. p. 42.