Projects

PSEUDOMONAS SYSTEMS BIOLOGY Appropriated (D)   Accession Number: 423000

Publications (Clicking on the reprint icon will take you to the publication reprint.)

Analysis of the small RNA P16/RgsA in the plant pathogen Pseudomonas syringae pathovar tomato strain DC3000 - (Peer Reviewed Journal)

Park, S., Butcher, B., Anderson, Z.U., Pellegrini, N., Bao, Z., D'Amico, K.M., Filiatrault, M.J. 2013. Analysis of the small RNA P16/RgsA in the plant pathogen Pseudomonas syringae pathovar tomato strain DC3000. Microbiology. 159:pp 296-306.

CrcZ and CrcX regulate carbon utilization in Pseudomonas syringae pathovar tomato strain DC3000 - (Peer Reviewed Journal)

Filiatrault, M.J., Stodghill, P., Wilson, J.M., Butcher, B.G., Chen, H., Meyers, C.R., Cartinhour, S.W. 2013. CrcZ and CrcX regulate carbon utilization in Pseudomonas syringae pathovar tomato strain DC3000. RNA Biology. 10(2):243-253.

Genome-wide identification of transcriptional start sites in the plant pathogen Pseudomonas syringae pv. tomato str. DC3000 - (Peer Reviewed Journal)

Filiatrault, M.J., Stodghill, P., Myers, C.R., Bronstein, P.A., Butcher, B.G., Lam, H., Grills, G., Schweitzer, P., Wang, W., Schneider, D.J., Cartinhour, S.W. 2011. Genome-wide identification of transcriptional start sites in the plant pathogen Pseudomonas syringae pv. tomato str. DC3000. PLoS One. 6(12). Available: http://www.plosone.org/article/info:doi/10.1371/journal.pone.0029335.

Progress in prokaryotic transcriptomics - (Review Article)

Filiatrault, M.J. 2011. Progress in prokaryotic transcriptomics. Current Opinion in Microbiology. 14(5):579-586.

The small RNA transcriptome of Pseudomonas syringae pathovar tomato DC3000 - (Abstract Only)

Filiatrault, M.J., Moll, S., Bao, Z., Maciak, C.L., Chen, H., Myers, C.R., Stodghill, P., Cartinhour, S.W. 2011. The small RNA transcriptome of Pseudomonas syringae pathovar tomato DC3000. International Conference on Pseudomonas syringae Pathovars. 13:20.

Characterization of the Fur regulon in Pseudomonas syringae pv. tomato DC3000 - (Peer Reviewed Journal)

Butcher, B.G., Bronstein, P., Myers, C., Stodghill, P., Bolton, J.J., Markel, E.J., Filiatrault, M.J., Swingle, B.M., Gaballa, A., Helmann, J.D., Schneider, D.J., Cartinhour, S.W. 2011. Characterization of the Fur regulon in Pseudomonas syringae pv. tomato DC3000. Journal of Bacteriology. 193(18):4598-4611. Available: http://www.ncbi.nlm.nih.gov/pubmed/21784947.

Construction of an rsmX co-variance model and identification of five rsmX-like ncRNAs in Pseudomonas syringae pv. tomato DC3000 - (Peer Reviewed Journal)

Moll, S., Schneider, D.J., Stodghill, P., Myers, C.R., Cartinhour, S.W., Filiatrault, M.J. 2010. Construction of an rsmX co-variance model and identification of five rsmX-like ncRNAs in Pseudomonas syringae pv. tomato DC3000. RNA Biology. 7(5):1-10.

Analyzing the transcriptome of Pseudomonas syringae using high-throughput sequencing methodologies - (Abstract Only)

Filiatrault, M.J., Bronstein, P., Stodghill, P., Moll, S., Schneider, D.J., Cartinhour, S.W. 2010. Analyzing the transcriptome of Pseudomonas syringae using high-throughput sequencing methodologies. Meeting Abstract. p. 31.

Transcriptome analysis of Pseudomonas syringae identifies new genes, ncRNAs, and antisense activity - (Peer Reviewed Journal)

Filiatrault, M.J., Stodghill, P., Bronstein, P., Moll, S., Lindeberg, M., Grills, G., Schweitzer, P., Wang, W., Schroth, G., Luo, S., Khrebtukova, I., Thannhauser, T.W., Yang, Y., Butcher, B.G., Cartinhour, S.W., Schneider, D.J. 2010. Transcriptome analysis of Pseudomonas syringae identifies new genes, ncRNAs, and antisense activity. Journal of Bacteriology. 192(9):2359-2372.

Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs - (Peer Reviewed Journal)

Oliver, H.F., Orsi, R.H., Ponnala, L., Keich, U., Wang, W., Sun, Q., Cartinhour, S.W., Filiatrault, M.J., Wiedmann, M., Boor, K.J. 2009. Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs. Biomed Central (BMC) Genomics. 10:641.

Integrating molecular and computational methods to evaluate the Pseudomonas syringae transcriptome I & II - (Proceedings)

Filiatrault, M.J., Stodghill, P. 2009. Integrating molecular and computational methods to evaluate the Pseudomonas syringae transcriptome I & II. American Phytopathological Society Abstracts.

High-throughput identification of transcriptional start sites in Pseudomonas syringae - (Abstract Only)

Filiatrault, M.J., Stodghill, P., Wang, W., Schweitzer, P., Grills, G., Cartinhour, S.W., Schneider, D.J. 2009. High-throughput identification of transcriptional start sites in Pseudomonas syringae. American Society for Microbiology. p. 251.

Investigating the role of two iron-regulated small RNAs of Pseudomonas syringae - (Abstract Only)

Bronstein, P., Filiatrault, M.J., Stodghill, P., Schneider, D.J., Cartinhour, S.W. 2009. Investigating the role of two iron-regulated small RNAs of Pseudomonas syringae. American Society for Microbiology. p. 20.

Global transcriptional responses of Pseudomonas syringae DC3000 to changes in iron bioavailability in vitro - (Peer Reviewed Journal)

Bronstein, P., Filiatrault, M.J., Myers, C., Rutzke, M., Schneider, D.J., Cartinhour, S.W. 2008. Global transcriptional responses of Pseudomonas syringae DC3000 to changes in iron bioavailability in vitro. BMC Microbiology. 8:209.

Characterization of two small RNAs of Pseudomonas syringae DC3000 - (Abstract Only)

Filiatrault, M.J., Bronstein, P., Stodghill, P., Cartinhour, S.W. 2008. Characterization of two small RNAs of Pseudomonas syringae DC3000. American Society for Microbiology Meeting.

Identification and Characterization of iron-responsive regulatory elements in Pseudomonas syringae pv tomato DC3000 - (Abstract Only)

Bronstein, P., Filiatrault, M.J., Cartinhour, S.W. 2008. Identification and Characterization of iron-responsive regulatory elements in Pseudomonas syringae pv tomato DC3000. American Society for Microbiology Meeting.

Shotgun Sequencing of the Pseudomonas syringae DC3000 Transcriptome - (Abstract Only)

Filiatrault, M.J., Bronstein, P., Stodghill, P., Declerck, G.A., Schneider, D.J., Cartinhour, S.W. 2007. Shotgun Sequencing of the Pseudomonas syringae DC3000 Transcriptome. American Society for Microbiology Conference. p. 20.

Global transcriptional responses of Pseudomonas syringae DC3000 to changes in iron bioavailability in vitro - (Abstract Only)

Bronstein, P., Filiatrault, M.J., Kim, B., Moll, M., Rutzke, M., Shuler, M., Schneider, D.J., Cartinhour, S.W. 2007. Global transcriptional responses of Pseudomonas syringae DC3000 to changes in iron bioavailability in vitro. American Society for Microbiology. p. 20.

Pseudomonas aeruginosa Virulence and Pathogenesis Issues - (Book / Chapter)

Wagner, V.E., Filiatrault, M.J., Picardo, K.F., Iglewski, B.H. 2008. Pseudomonas aeruginosa Virulence and Pathogenesis Issues. Book Chapter. p. 129-158.