Projects

The Maize Genetics and Genomics Database Appropriated (D)   Accession Number: 413161

Development of Novel Maize Sequence Access and Analysis Methods for Maizegdb Specific Cooperative Agreement (S)   Accession Number: 412051

Publications

The Locus Lookup Tool at MaizeGDB: Identification of Genomic Regions in Maize by Integrating Sequence Information with Physical and Genetic Maps - (Peer Reviewed Journal) - (11-Sep-09)

MaizeGDB Becomes Sequence-centric - (Peer Reviewed Journal) - (02-Jun-09)

The MaizeGDB Genome Browser - (Abstract) - (27-Jan-09)

High-throughput Linkage Analysis of Mutator Insertion Sites in Maize - (Peer Reviewed Journal)

Yi, G., Luth, D., Goodman, T.D., Lawrence, C.J., Becraft, P.W. 2009. High-throughput Linkage Analysis of Mutator Insertion Sites in Maize. Plant Journal. 58(5):883-892.

A Recommendation for Naming Transcription Factor Proteins in the Grasses - (Peer Reviewed Journal)

Gray, J., Bevan, M., Brutnell, T., Buell, C., Cone, K., Hake, S.C., Jackson, D., Kellogg, E., Lawrence, C.J., Mccouch, S., Mockler, T., Moose, S., Paterson, A., Peterson, T., Rokshar, D., Souza, G., Springer, N., Stein, N., Timmermans, M., Wang, G., Grotewold, E. 2009. A Recommendation for Naming Transcription Factor Proteins in the Grasses. Plant Physiology. 149(1):4-6.

The MaizeGDB Genome Browser - (Abstract) - (03-Oct-08)

Genome Browser Survey Results and Browser Selection for MaizeGDB - (Proceedings/Symposium) - (24-Jun-08)

MaizeGDB: The Maize Model Organism Database for Basic, Translational, and Applied Research - (Peer Reviewed Journal)

Lawrence, C.J., Harper, E.C., Schaeffer, M.L., Sen, T.Z., Seigfried, T.E., Campbell, D.A. 2008. MaizeGDB: The Maize Model Organism Database for Basic, Translational, and Applied Research. International Journal of Plant Genomics. 2008:496957.

BioExtract Server - An Integrated Workflow-enabling System to Access and Analyze Heterogeneous, Distributed Biomolecular Data - (Peer Reviewed Journal)

Lushbough, C., Bergman, M.K., Lawrence, C.J., Jennewein, D., Brendel, V. 2008. BioExtract Server - An Integrated Workflow-enabling System to Access and Analyze Heterogeneous, Distributed Biomolecular Data. IEEE/ACM Transactions on Computational Biology and Bioinformatics. http://doi.ieeecomputersociety.org/10.1109/TCBB.2008.98.

MaizeGDB's New Genome Browser Project - (Abstract)

Sen, T.Z., Seigfried, T.E., Campbell, D.A., Schaeffer, M.L., Harper, E.C., Lawrence, C.J. 2008. MaizeGDB's New Genome Browser Project. In: 50th Maize Genetics Conference Proceedings, February 27-March 2, 2008, Washington, D.C. p. 61.

Maize Genetics and Genomics Database - (Research Notes)

Schaeffer, M.L., Campbell, D.A., Seigfried, T.E., Harper, E.C., Sen, T.Z., Lawrence, C.J. 2008. Maize Genetics and Genomics Database. Maize Genetics Cooperation Newsletter. 82:82-83.

PlantGDB: A Resource for Comparative Plant Genomics - (Peer Reviewed Journal)

Duvick, J., Fu, A., Muppirala, U., Sabharwal, M., Wilkerson, M.D., Lawrence, C.J., Lushbough, C., Brendel, V. 2007. PlantGDB: A Resource for Comparative Plant Genomics. Nucleic Acids Research. 36:D959-965.

Plant Cytogenetics in Genome Databases - (Book/Chapter) - (30-Oct-07)

MaizeGDB Community Curation Tools - (Abstract)

Sen, T.Z., Campbell, D.A., Harper, E.C., Lawrence, C.J., Schaeffer, M.L., Seigfried, T.E. 2008. MaizeGDB Community Curation Tools. In: Annual International Plant & Animal Genome XVI Conference Proceedings, January 12-16, 2008, San Diego, CA. p. 940.

Reply: Specific Reasons to Favor Maize in the U.S. - (Peer Reviewed Journal)

Lawrence, C.J., Walbot, V. 2007. Reply: Specific Reasons to Favor Maize in the U.S. The Plant Cell. 19(10):2973.

Databases and data mining - (Book/Chapter)

Lawrence, C.J., Ware, D. 2009. Databases and data mining. In: Bennetzen, J.L., Hake, S., editors. Handbook of Maize. Vol. 2, Genetics and Genomics. 1st edition. New York, NY: Springer Science and Business Media, LLC. p. 659-672.

Translational Genomics for Bioenergy Production from Fuelstock Grasses: Maize as the Model Species - (Peer Reviewed Journal)

Lawrence, C.J., Walbot, V. 2007. Translational Genomics for Bioenergy Production from Fuelstock Grasses: Maize as the Model Species. The Plant Cell. 19(7):2091-2094.

Maize Genetics and Genomics Database - (Other)

Schaeffer, M.L., Harper, E.C., Seigfried, T.E., Campbell, D.A., Lawrence, C.J. 2007. Maize Genetics and Genomics Database. Maize Genetics Cooperation Newsletter. 81:68-70.

Creating Bioinformatic Workflows within the BioExtract Server - (Proceedings/Symposium)

Lushbough, C., Bergman, M.K., Lawrence, C.J., Jennewein, D., Brendel, V. 2007. Creating Bioinformatic Workflows within the BioExtract Server. In: BIOCOMP 07 Proceedings. The 2007 International Conference on Bioinformatics and Computational Biology, June 25-28, 2007, Las Vegas, NV. p. 18.

Maize Genetics Outreach to American Indians - (Other)

Lawrence, C.J., Gardner, C.A., Widrlechner, M.P., Brendel, V. 2008. Maize Genetics Outreach to American Indians. Maize Genetics Cooperation Newsletter. p. 2.

MaizeGDB's New Data Types, Resources, and Activities - (Peer Reviewed Journal)

Lawrence, C.J., Schaeffer, M.L., Seigfried, T.E., Campbell, D.A., Harper, L.C. 2007. MaizeGDB's New Data Types, Resources, and Activities. Nucleic Acids Research. 35:D895-D900.

MaizeGDB's new data types, resources, and activities - (Abstract)

Lawrence, C.J., Schaeffer, M.L., Seigfried, T.E., Campbell, D.A., Harper, L.C. 2007. MaizeGDB's new data types, resources, and activities. Annual International Plant & Animal Genome Conference. XV:P941.

Constructing a Cytogenetic Map of the Maize Genome - (Abstract)

Figueroa, D.M., Amarillo, F.E., Ferdette, N.C., Morganti, A.T., Davis, J.D., Lawrence, C.J., Bass, H.W. 2007. Constructing a Cytogenetic Map of the Maize Genome. In: Plant and Animal Genome Conference Proceedings. Annual International Plant and Animal Genome Conference, January 13-17, 2007, San Diego, CA. XV:P349.

The History of Maize and its Current Uses - (Popular Publication)

Lawrence, C.J. 2006. The History of Maize and its Current Uses [abstract]. Festival del Maiz handout. p. 1.

The NSF Plant Genome Research Outreach Program for American Indians at Iowa State University - (Proceedings/Symposium)

Lawrence, C.J., Gardner, C.A., Widrlechner, M.P., Brendel, V. 2006. The NSF Plant Genome Research Outreach Program for American Indians at Iowa State University [abstract]. Book of Abstracts - Plant Genome Research Program 9th Annual Awardee Meeting. p. 3.

Cyberinfrastructure for (Comparative) Plant Genome Research Through PlantGDB - (Proceedings/Symposium)

Brendel, V., Lawrence, C.J., Lushbough, C. 2006. Cyberinfrastructure for (Comparative) Plant Genome Research Through PlantGDB [abstract]. Book of Abstracts - Plant Genome Research Program 9th Annual Awardee Meeting. p. 42-43.

Summer Research Internships in Plant Genome Research for American Indians at Iowa State University - (Abstract)

Lawrence, C.J., Cruz, V.M., Gardner, C.A., Widrlechner, M.P., Millard, M.J., Seigfried, T.E., Campbell, D.A., Brendel, V. 2006. Summer research internships in plant genome research for American Indians at Iowa State University [abstract]. Book of Abstracts - Collaborative Plant Biology in the Rocky Mountain/Midwest Region: Impacts and Future Prospects for Plant Genomics. p. 31.

MaizeGDB: The Maize Genetics and Genomics Database - (Book/Chapter)

Lawrence, C.J. 2007. MaizeGDB: The Maize Genetics and Genomics Database. In: Edwards, D., editor. Plant Bioinformatics Methods and Protocols. 1st edition. Totowa, NJ: Humana Press. p. 331-346.

Save Our Data! - (Popular Publication)

Stein, L.D., Beavis, W.D., Gessler, D.D., Huala, E., Lawrence, C.J., Main, D., Mueller, L.A., Rhee, S.Y., Rokhsar, D.S. 2006. Save our data! The Scientist 20(4):24-25.

Contribute Your Data to Maizegdb! - (Abstract)

Lawrence, C.J., Campbell, D.A., Seigfried, T.E., Schaeffer, M.L. 2006. Contribute your data to MaizeGDB! [abstract]. 48th Annual Maize Genetics Conference Program and Abstracts. p. 47.

Predicting Chromosomal Locations of Genetically Mapped Loci in Maize Using the Morgan2mcclintock Translator - (Abstract)

Lawrence, C.J., Seigfried, T.E., Anderson, L.K., Amarillo, I.E., Bass, H.W. 2006. Predicting chromosomal locations of genetically mapped loci in maize using the Morgan2McClintock translator [abstract]. 48th Annual Maize Genetics Conference Program and Abstracts. p. 55.

Potential Impact of the Ab10 Chromosome on Preservation of Maize Genetic Resources - (Abstract)

Lawrence, C.J., Hiatt, E.N., Millard, M.J., Gardner, C.A. 2006. Potential impact of the Ab10 chromosome on preservation of maize genetic resources [abstract]. 48th Annual Maize Genetics Conference Program and Abstracts. p. 228.

Construction of a High-Density Cytogenetic Map of Maize Chromosome 9 Using Sorghum Bacs As Fish Probes - (Abstract)

Amarillo, I.E., Bass, H.W., Lawrence, C.J. 2006. Construction of a high-density cytogenetic map of maize chromosome 9 using sorghum BACs as FISH probes [abstract]. 48th Annual Maize Genetics Conference Program and Abstracts. p. 72.

Qtl Data at Maizegdb: Curation and "then Some" - (Abstract)

Schaeffer, M.L., Baran, S.B., Lawrence, C.J. 2006. QTL data at maizeGDB: curation and "then some" [abstract]. 48th Annual Maize Genetics Conference Program and Abstracts. p. 231.

Maizegdb Standard Operating Procedures - (Abstract)

Campbell, D.A., Seigfried, T.E., Schaeffer, M.L., Lawrence, C.J. 2006. MaizeGDB standard operating procedures [abstract]. 48th Annual Maize Genetics Conference Program and Abstracts. p. 51.

Maizegdb: the Maize Community Genetics and Genomics Database - (Abstract)

Seigfried, T.E., Campbell, D.A., Schaeffer, M.L., Lawrence, C.J. 2006. MaizeGDB: The maize community genetics and genomics database [abstract]. 48th Annual Maize Genetics Conference Program and Abstracts. p. 52.

A Comparison of Centromere Mapping Techniques - (Abstract)

Okagaki, R., Jacobs, M., Schneeman, M., Kynast, R., Lawrence, C.J., Kamps, T., Rines, H.W., Weber, D., Bass, H.W., Phillips, R. 2006. A comparison of centromere mapping techniques [abstract]. 48th Annual Maize Genetics Conference Program and Abstracts. p. 68.

Constructing a Cytogenetic Map of Maize Core Bin Markers in Oat Addition Lines Using Sorghum Bacs As Fish Probes - (Abstract)

Figueroa, D., Amarillo, I.E., Ring, B., Strobel, C., Lawrence, C.J., Bass, H.W. 2006. Constructing a cytogenetic map of maize core bin markers in oat addition lines using sorghum BACs as FISH probes [abstract]. 48th Annual Maize Genetics Conference Program and Abstracts. p. 71.

Predicting Chromosomal Locations of Genetically Mapped Loci in Maize Using the Morgan2mcclintock Translator - (Peer Reviewed Journal)

Lawrence, C.J., Seigfried, T.E., Bass, H.W., Anderson, L.K. 2006. Predicting chromosomal locations of genetically mapped loci in maize using the Morgan2McClintock translator. Genetics. 172(3):2007-2009.

Predict Chromosomal Locations of Genetically Mapped Loci in Maize Using the Morgan2mcclintock Translator - (Abstract)

Lawrence, C.J., Amarillo, I.E., Seigfried, T.E., Bass, H.W., Anderson, L.K. 2006. Predict chromosomal locations of genetically mapped loci in maize using the Morgan2McClintock translator [abstract]. Plant and Animal Genome XIV: Final Abstract Guide. p. 881.

Maizegdb, the Maize Genetics and Genomics Database - (Abstract)

Lawrence, C.J., Schaeffer, M.L., Seigfried, T.E., Campbell, D.A. 2006. MaizeGDB, the maize genetics and genomics database [abstract]. Plant and Animal Genome XIV: Final Abstract Guide. C001.

A Cytogenetic Map of Maize in Oat Addition Lines Using Sorghum Bacs As Fish Probes - (Abstract)

Figueroa, D.M., Amarillo, I.E., Ring, B.C., Strobel, C.E., Lawrence, C.J., Bass, H.W. 2006. A cytogenetic map of maize in oat addition lines using sorghum BACs as FISH probes [abstract]. Plant and Animal Genome XIV: Final Abstract Guide. p. 367.

A Framework of Complex Queries for Plant Phenotype Image Databases - (Abstract)

Shyu, C., Green, J., Farmer, C., Kazic, T., Coe, E.H., Schaeffer, M.L., Lawrence, C.J., Millard, M.J., Cyr, P.D., Gardner, C.A. 2006. A framework of complex queries for plant phenotype image databases [abstract]. Plant and Animal Genome XIV: Final Abstract Guide. p. 875.

A Cytogenetic Map of Maize in Oats with Sorghum Bac Fish Probes - (Abstract)

Bass, H.W., Figueroa, D., Amarillo, I., Ring, B.C., Seigfried, T.E., Lawrence, C.J. 2005. A cytogenetic map of maize in oats with sorghum BAC FISH probes [abstract]. 2005 Program Book of the NSF Plant Genome Research Annual Awardee Meeting. Abstract number 0321639.

Maize Gdb: the Maize Genetics and Genomics Database - (Other)

Lawrence, C.J. 2005. MaizeGDB: The maize genetics and genomics database. The Cold Spring Harbor Laboratory Workshop on Cereal Genomics Workbook. p. 1-9.

The Maize Genetics and Genomics Database: a Community Resource for Access to Diverse Maize Data - (Proceedings/Symposium)

Lawrence, C.J., Seigfried, T.E., Schaeffer, M.L., Campbell, D.A., Brendel, V. 2005. The maize genetics and genomics database: a community resource for access to diverse maize data. In: ASA-CSSA-SSSA Proceedings. ASA-CSSA-SSSA International Annual Meetings, Nov. 6-10, 2005, Salt Lake City, UT. p. 2439.

Comparative Plant Genomics Resources at Plantgdb - (Peer Reviewed Journal)

Dong, Q., Lawrence, C.J., Schlueter, S.D., Wilkerson, M.D., Kurtz, S., Lushbough, C., Brendel, V. 2005. Comparative plant genomics resources at PlantGDB. Plant Physiology. 139(2):610-618.

The Maize Genetics and Genomics Database. the Community Resource for Access to Diverse Maize Data - (Peer Reviewed Journal)

Lawrence, C., Seigfried, T.E., Brendel, V. 2005. The maize genetics and genomics database. The community resource for access to diverse maize data. Plant Physiology. 138(1):55-58.