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United States Department of Agriculture

Agricultural Research Service

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Daniel K Manter
Soil Plant Nutrient Research (SPNR)
Research Plant Physiologist

Phone: (970) 492-7255
Fax: (970) 492-7213
NATURAL RESOURCES RESEARCH CENTER
2150 CENTRE AVENUE, BUILDING D, SUITE 100
FORT COLLINS, CO, 80526-8119

Projects
Management Practices to Mitigate Global Climate Change, Enhance Bio-Energy Production, Increase Soil-C Stocks & Sustain Soil Productivity...
Appropriated (D)
  Accession Number: 419520

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Antimicrobial Properties of an Oxidizer Produced by Burkholderia cenocepacia P525 - (Peer Reviewed Journal)
Hunter, W.J., Manter, D.K. 2014. Antimicrobial Properties of an Oxidizer Produced by Burkholderia cenocepacia P525. Current Microbiology. 68:610-614.
Leuconostoc pseudomesenteroides WCFur3 partial 16S rRNA gene - (Other)
Hunter, W.J., Manter, D.K. 2013. Leuconostoc pseudomesenteroides WCFur3 partial 16S rRNA gene. Genbank. on-line database.
Cover crops alter the soil microbial community and increase potato tuber yield and quality - (Abstract Only)
Manter, D.K., Delgado, J.A., Dillon, M., Essah, S. 2013. Cover crops alter the soil microbial community and increase potato tuber yield and quality. American Society of Agronomy Abstracts. 1.
Methods for improving PGPR establishment - (Abstract Only)
Manter, D.K., Badri, D., Vivanco, J. 2013. Methods for improving PGPR establishment. American Society of Agronomy Abstracts. 1.
Rhizobium selenitireducens proteins involved in the reduction of selenite to elemental selenium - (Abstract Only)
Hunter, W.J., Manter, D.K. 2013. Rhizobium selenitireducens proteins involved in the reduction of selenite to elemental selenium. Bioremediation and Sustainable Environmental Technologies. 1.
Potato root-associated bacteria: site/cultivar differences and associations with tuber yield and quality - (Abstract Only)
Barnett, B.A., Vivanco, J., Manter, D.K. 2013. Potato root-associated bacteria: site/cultivar differences and associations with tuber yield and quality. American Society of Agronomy Abstracts. 1.
Stool microbiome and metabolome differences between colorectal cancer patients and healthy adults - (Peer Reviewed Journal)
Weir, T., Manter, D.K., Sheflin, A., Barnett, B.A., Heuberger, A., Ryan, E. 2013. Stool microbiome and metabolome differences between colorectal cancer patients and healthy adults. PLoS One. 8(8):e70803.
Effect of plant sterols and tannins on Phytophthora ramorum growth and sporulation - (Peer Reviewed Journal)
Stong, R.A., Kolodny, E., Kelsey, R., González-Hernández, M.P., Manter, D.K. 2013. Effect of plant sterols and tannins on Phytophthora ramorum growth and sporulation. Journal of Chemical Ecology. 39:733-743.
Soil microbiomass vary in their ability to confer drought tolerance to Arabidopsis - (Peer Reviewed Journal)
Zolla, G., Badri, D., Manter, D.K., Vivanco, J. 2013. Soil microbiomass vary in their ability to confer drought tolerance to Arabidopsis. Applied Soil Ecology. 68:1-9.
Ethanol attracts scolytid beetles to Phytophthora ramorum cankers on coast live oak - (Peer Reviewed Journal)
Kelsey, R.G., Beh, M., Shaw, D., Manter, D.K. 2013. Ethanol attracts scolytid beetles to Phytophthora ramorum cankers on coast live oak. Journal of Chemical Ecology. 39:494-506.
Root exudation of phytochemicals in Arabidopsis follows specific patterns that are developmentally programmed and correlate with soil microbial functions - (Peer Reviewed Journal)
Chaparro, J.M., Badri, D.V., Bakker, M.G., Sugiyama, A., Manter, D.K., Vivanco, J.M. 2013. Root exudation of phytochemicals in Arabidopsis follows specific patterns that are developmentally programmed and correlate with soil microbial functions. PLoS One. 8:e55731.
Potential impact of soil microbiomes on the leaf metabolome and on herbivore feeding behavior - (Peer Reviewed Journal)
Badri, D., Zolla, G., Baker, M., Manter, D.K., Vivanco, J. 2013. Potential impact of soil microbiomes on the leaf metabolome and on herbivore feeding behavior. New Phytologist. 198:264-273.
Relationships between Arabidopsis thaliana and soil bacterial communities - (Peer Reviewed Journal)
Sugiyama, A., Bakker, M., Badri, D., Manter, D.K., Vivanco, J. 2012. Relationships between Arabidopsis thaliana and soil bacterial communities. Botany. 91:123-126.
Pseudomonas kuykendallii sp. nov. - (Abstract Only) - (17-Sep-12)
Understanding root-microbiome interactions - (Book / Chapter)
Zolla, G., Bakker, M., Chaparro, J., Sheflin, A., Badri, D., Manter, D.K., Vivanco, J.M. 2013. Understanding root-microbiome interactions. In: Frans J. de Bruijn, editor. Molecular Microbial Ecology of the Rhrizosphere. New York, NY: Wiley & Sons, p. 743-754.
Defense-and stress-related proteins are involved in early events related to plant-plant recognition prior to competition - (Peer Reviewed Journal)
Badri, D.V., De-La-Pena, C., Vivanco, J.M., Lei, Z., Manter, D.K., Guimaraes, R., Summer, L.W. 2012. Defense-and stress-related proteins are involved in early events related to plant-plant recognition prior to competition. PLoS Biology. 7:e46640.
Biotransformation of Ferulic acid to 4-Vinylguaiacol by Enterobacter soli and E. aerogenes - (Peer Reviewed Journal)
Hunter, W.J., Manter, D.K., Van De Lelie 2012. Biotransformation of Ferulic acid to 4-Vinylguaiacol by Enterobacter soli and E. aerogenes. Current Microbiology. 65:752-757.
Isolation and characterization of lignin-degrading bacteria from rainforest soils - (Peer Reviewed Journal)
Huang, X., Santhanam, N., Badri, D., Hunter, W.J., Manter, D.K., Decker, S., Vivanco, J., Reardon, K. 2013. Isolation and characterization of lignin-degrading bacteria from rainforest soils. Biotechnology and Bioengineering. 110:1616-1626.
Effects of cover crops on the microbial community and its ability to suppress disease and acquire nutrients - (Abstract Only)
Barnett, B.A., Delgado, J.A., Manter, D.K. 2012. Effects of cover crops on the microbial community and its ability to suppress disease and acquire nutrients. Potato Association of America Proceedings. p. 10.
Marshner Review: Harnessing the rhizosphere microbiome through plant breeding and agricultural management - (Peer Reviewed Journal)
Bakker, M., Manter, D.K., Sheflin, A., Weir, T., Vivanco, J. 2012. Marshner Review: Harnessing the rhizosphere microbiome through plant breeding and agricultural management. Plant and Soil. DOI: 10.1007/s1104-012-1361-x.
Influence of ATP-binding cassette transporters in root exudation of phytoalexins, signals, and disease resistance - (Peer Reviewed Journal)
Badri, D.V., Chaparro, J.M., Manter, D.K., Martinoia, E., Vivanco, J. 2012. Influence of ATP-binding cassette transporters in root exudation of phytoalexins, signals, and disease resistance. Frontiers in Plant Science. 3(149):1-17.
Pseudomonas kuykendallii sp. nov.: A novel y-Proteobacteria isolated from a hexazinone degrading bioreactor - (Peer Reviewed Journal)
Hunter, W.J., Manter, D.K. 2012. Pseudomonas kuykendallii sp. nov.: A novel y-Proteobacteria isolated from a hexazinone degrading bioreactor. Current Microbiology. 65:170-175.
Manipulating the soil microbiome to increase soil health and plant fertility - (Peer Reviewed Journal)
Chaparro, J.M., Sheflin, A.M., Manter, D.K., Vivanco, J.M. 2012. Manipulating the soil microbiome to increase soil health and plant fertility. Biology and Fertility of Soils. 48:489-499.
Co-adaptationary aspects of the underground communication between plants and other organisms - (Book / Chapter)
Sugiyama, A., Manter, D.K., Vivanco, J. 2012. Co-adaptationary Aspects of the Underground Communication Between Plants and Other Organisms. In: Witzany, G. editor. Biocommunication of Plants. G. Witzany (ed). Springer, NY. pp. 361-376.
Lignocellulose decomposition by microbial secretions - (Book / Chapter)
Santhanam, N., Badri, D., Decker, S., Manter, D.K., Reardon, K., Vivanco, J. 2012. Lignocellulose Decomposition by Microbial Secretions. In: Baluska, F. and Vivance, J.M. editors. Secretions and Exudates in Biological Systems. Springer, NY. pp. 125-153.
Enterobacter soli sp. nov.: a lignin-degrading y-Proteobacteria isolated from soil - (Peer Reviewed Journal)
Manter, D.K., Hunter, W.J., Vivanco, J.M. 2011. Enterobacter soli sp. nov.: a lignin-degrading y-Proteobacteria isolated from soil. Current Microbiology. 62(3):1044-1049.
Increased electrical output when a bacterial ABTS oxidizer is used in a microbial fuel cell - (Peer Reviewed Journal)
Hunter, W.J., Manter, D.K. 2011. Increased electrical output when a bacterial ABTS oxidizer is used in a microbial fuel cell. Current Microbiology. 62(2):633-638.
Pseudomonas seleniipraecipitatus sp. nov.: A selenite reducing -proteobacteria isolated from soil - (Peer Reviewed Journal)
Hunter, W.J., Manter, D.K. 2011. Pseudomonas seleniipraecipitatus sp. nov.: A selenite reducing - proteobacteria isolated from soil. Current Microbiology. 62(2):565-569.
Pyrosequencing assessment of soil microbial communities in organic and conventional potato farms Reprint Icon - (Peer Reviewed Journal)
Sugiyama, A., Vivanco, J., Jayanty, S., Manter, D.K. 2010. Pyrosequencing assessment of soil microbial communities in organic and conventional potato farms. Plant Disease doi:10.1094/PDIS-02-10-0090.
Virulence, sporulation, and elicitin production in three clonal lineages of Phytophthora ramorum - (Peer Reviewed Journal)
Manter, D.K., Kolodny, E.H., Hansen, E.M., Parke, J.L. 2010. Virulence, sporulation, and elicitin production in three clonal lineages of Phytophthora ramorum. Physiological and Molecular Plant Pathology. 74:317-322.
Pyrosequencing reveals a highly diverse and cultivar-specific bacterial endophyte community in plant roots - (Peer Reviewed Journal)
Manter, D.K., Delgado, J.A., Holm, D., Stong, R.A. 2010. Pyrosequencing reveals a highly diverse and cultivar-specific bacterial endophyte community in plant roots. Microbial Ecology. 60:157-166.
Negative Effects of Sample Pooling on PCR-based Estimates of Soil Microbial Richness and Community Structure. - (Peer Reviewed Journal)
Manter, D.K., Weor, T., Vivanco, J. 2010. Negative Effects of Sample Pooling on PCR-based Estimates of Soil Microbial Richness and Community Structure. Applied and Environmental Microbiology. 76:2086-2090.
Use of a Burkholderia cenocepacia ABTS Oxidizer in a Microbial Fuel Cell - (Abstract Only) - (26-Jan-10)
An ABC Transporter Mutation Alters Root Exudation of Phytochemicals that Provoke an Overhaul of Natural Soil Microbiota. - (Peer Reviewed Journal)
Quintana, N., Badri, D., Kassis, E., Kim, H., Choi, Y., Verpoorte, R., Martinoia, E., Manter, D.K., Vivanco, J. 2009. An ABC Transporter Mutation Alters Root Exudation of Phytochemicals that Provoke an Overhaul of Natural Soil Microbiota. Journal of Plant Physiology. 151:2006-2017.
Effect of Plant Sterols and Tannins on Phytopthora ramorum growth and sporulations. 4th Sudden Oak Death Science Symposium. - (Abstract Only)
Manter, D.K., Hansen, E., Parke, J. 2009. Effect of Plant Sterols and Tannins on Phytopthora ramorum growth and sporulations. 4th Sudden Oak Death Science Symposium. pp. 24.
Reduced expression of defense-related transcripts of an invasive weed in its introduced range - (Peer Reviewed Journal)
Broz, A., Manter, D.K., Bowman, G., Muller-Scharer, H., Vivanco, J. 2009. Reduced expression of defense-related transcripts of an invasive weed in its introduced range. Biomed Central (BMC) Plant Biology. 9:33.
Reduction of Selenite to Elemental Red Selenium by Pseudomonas sp. strain CA5 - (Peer Reviewed Journal)
Hunter, W.J., Manter, D.K. 2009. Reduction of Selenite to Elemental Red Selenium by Pseudomonas sp. strain CA5. Current Microbiology. 58:493-498.
Pseudomonas sp. strain CA5 (a selenite-reducing bacterium) 16S rRNA gene complete sequence. National Institute of Health, National Center for Biotechnology Information, GenBank sequence. Accession FJ422810.1. - (Other)
Hunter, W.J., Manter, D.K. 2008. Pseudomonas sp. strain CA5 (a selenite-reducing bacterium) 16S rRNA gene complete sequence. National Institute of Health, National Center for Biotechnology Information, GenBank sequence. Accession FJ422810.1. Genbank.
A molecular approach to understanding plant-plant interactions in the context of invasion biology. - (Peer Reviewed Journal)
Broz, A.K., Manter, D.K., Calloway, R.M., Paschke, M.W., Vivanco, J.M. 2008. A molecular approach to understanding plant-plant interactions in the context of invasion biology.Functional Plant Biology. 35:1123-1134.
Reduced expression of defense-related transcripts of an invasive weed in its introduced range - (Abstract Only)
Broz, A., Manter, D.K., Bowman, G., Muller-Scharer, H., Vivanco, J. 2008. Reduced expression of defense-related transcripts of an invasive weed in its introduced range. Presented at the American Society of Plant Biologists, June 26-July 1, 2008, Merida, Mexico.
Tetrathiobacter kashmirensis Strain CA-1 16S rRNA gene complete sequence. - (Other)
Tetrathiobacter kashmirensis Strain CA-1 16S rRNA gene complete sequence. National Institute of Health, National Center for Biotechnology Information, GenBank sequence. Accession EU447156. http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&id=183583688 . Genbank.
Rhizobium selenireducens sp. nov. Validation and inclusion onto the list of organisms with standing in nomenclature. - (Peer Reviewed Journal)
Hunter, W.J., Kuykendall, L.D., Manter, D.K. 2008. Rhizobium selenireducens sp. nov. Validation and inclusion onto the list of organisms with standing in nomenclature. International Journal of Systematic and Evolutionary Microbiology 58:1057.
Bio-reduction of Selenite to Elemental Red Selenium by Tetrathiobacter kashmirensis - (Peer Reviewed Journal)
Hunter, W.J., Manter, D.K. 2008. Bio-reduction of Selenite to Elemental Red Selenium by Tetrathiobacter kashmirensis. Current Microbiology 57:83-88.
Sustainable Cover Crop Rotations with Potential to Improve Yields, Crop Quality, and Nutrient and Water Use Efficiencies- - (Abstract Only)
Delgado, J.A., Essah, S., Dillon, M., Ingham, R., Manter, D.K., Stuebe, A., Sparks, R. 2008. Sustainable Cover Crop Rotations with Potential to Improve Yields, Crop Quality, and Nutrient and Water Use Efficiencies-. Soil and Water Conservation Society Proceedings.
Manual of Environmental Microbiology - Literature Review. - (Book / Chapter)
Manter, D.K. 2008. Manual of Environmental Microbiology. Soil Science Society of America Journal 72:566.
Root exudate diversity regulates soil fungal community composition and diversity - (Peer Reviewed Journal)
Manter, D.K., Broeckling, C., Broz, A., Bergelson, J., Vivanco, J. 2007. Root exudate diversity regulates soil fungal community composition and diversity. Applied and Environmental Microbiology. 74:738-744.
Ethanol accumulation in drought-stressed conifer seedlings. - (Peer Reviewed Journal)
Manter, D.K., Kelsey, R.G. 2008. Ethanol accumulation in drought-stressed conifer seedlings. International Journal of Plant Science. 169:361-369.
Soil fungal abundance and diversity: another victim of the invasive plant Centaurea maculosa - (Peer Reviewed Journal)
Broz, A., Manter, D.K., Vivanco, J. 2007. Soil fungal abundance and diversity: another victim of the invasive plant Centaurea maculosa. ISME Journal 1:763-765.
Antifungal Activity of Extractable Conifer Heartwood Compounds Toward Phytophthora ramorum - (Peer Reviewed Journal)
Manter, D.K., Kelsey, R.G., Karchesy, J.J. 2007. Antifungal Activity of Extractable Conifer Heartwood Compounds Toward Phytophthora ramorum. Journal of Chemical Ecology. DOI 10.1007/s10886-007-9368-0.
Use of the ITS Primers, ITS1F and ITS4, to Characterize Fungal Abundance and Diversity in Mixed-template Samples by qPCR and Length Heterogeneity Analysis - (Peer Reviewed Journal)
Manter, D.K., Vivanco, J. Use of the ITS Primers, ITS1F and ITS4, to Characterize Fungal Abundance and Diversity in Mixed-template Samples by qPCR and Length Heterogeneity Analysis. Journal of Microbiological Methods. On-line link doi:10.1016/j.mimet.2007.06.016 until journal is printed.
Rhizobium selenireducens sp. nov.: A selenite reducing a-Proteobacteria isolated from a bioreactor - (Peer Reviewed Journal)
Hunter, W.J., Kuykendall, L.D., Manter, D.K. 2007. Rhizobium selenireducens sp. nov.: A selenite reducing a-Proteobacteria isolated from a bioreactor. Current Microbiology. Vol. 55:455-460.
Photosynthesis Declines in Phyrophthora ramorum-Infected Plants Develop Prior to Water Stree and in Response to Exogenous Application of Elicitins - (Peer Reviewed Journal)
Manter, D.K., Kelsey, R.G., Karchesy, J.J. 2007. Isolation, characterization and biological activity of phytophthora ramorum elicitins in compatible and incompatible hosts. Journal of Phytopathology. 97:850-856.
Effect of Cover Crops on Soil Fungal Diversity and Biomass - (Proceedings)
Manter, D.K., Delgado, J.A., Merlin, D., Samuel, E. 2007. Effect of Cover Crops on Soil Fungal Diversity and Biomass. Meeting Proceedings. pp. 21-22.
Using Green Manure to Enhance POtato Production: II, Other Bnenefits -Effects on Nutrient Cycling, Tuber Yield and Quality - (Proceedings)
Delgado, J.A., Essah, S., Dillon, M., Ingahn, R., Manter, D.K., Stuebe, A., Sparks, R. 2007. Using Green Manure to Enhance POtato Production: II, Other Bnenefits -Effects on Nutrient Cycling, Tuber Yield and Quality. 24th Annual Potato/Grain Conference, Jan. 30 - Feb. 2, 2007, Colorado State University, Monte Vista, CO.
Rhizosphere Ecology - (Book / Chapter) - (06-Jan-07)
Phytophthora ramorum alpha elicitin 1 gene, complete cds. - (Other)
Manter, D.K., Kelsey, R.G., Karchesy, J.J. 2006. Phytophthora ramorum alpha elicitin 1 gene, complete cds. Genbank. Accession # DQ680026.
Phytophthora ramorum alpha elicitin 2 gene, complete cds. - (Other)
Manter, D.K., Kelsey, R.G., Karchesy, J.J. 2006. Phytophthora ramorum alpha elicitin 2 gene, complete cds. Genbank Accession # DQ680027. . Genbank.
Phytophthora lateralis alpha elicitin 1, gene, complete cds. - (Other)
Manter, D.K., Kelsey, R.G., Karchesy, J.J. 2006. Phytophthora lateralis alpha elicitin 1, gene, complete cds. Genbank. Genbank Accession # DQ680028.
Phytophthora lateralis alpha elicitin 2 gene, complete cds. - (Other)
Manter, D.K., Kelsey, R.G., Karchesy, J.J. 2006. Phytophthora lateralis alpha elicitin 2 gene, complete cds. Genbank. Accession Number #DQ680029.
Natural Products from Forest Resources for Use as Arthropod and Fungal Biocides - (Abstract Only)
Karchesy, J.J., Javier, P., Manter, D.K., Marc, D., Panella, N., Karchesy, Y., Kelsey, R.G., Dietrick, G., Piesman, J. 2006. Natural Products from Forest Resources for Use as Arthropod and Fungal Biocides. Meeting Abstract.
Natural products from forest resources for use as arthropod and fungal biocides. - (Abstract Only)
Karchesy, J.J., Dolan, M., Manter, D.K., Panella, N., Karchesy, Y., Dietrich, G. 2007. Natural products from forest resources for use as arthropod and fungal biocides. Abstract. Phytochemical Society of Europe and North America Proceedings.
Photosynthetic declines are induced by Phtophthora ramorum infection and exposure to elicitins. - (Abstract Only)
Manter, D.K., Kelsey, R.G., Karchesy, J.J. 2007. Photosynthetic declines are induced by Phtophthora ramorum infection and exposure to elicitins. Sudden Oak Death Science Symposium. p. 125.
Antifungal activity of extracts and select compounds in heartwood of seven western conifers toward Phytophthora ramorum - (Abstract Only)
Manter, D.K., Kelsey, R.G., Karchesy, J.J. 2007. Antifungal activity of extracts and select compounds in heartwood of seven western conifers toward Phytophthora ramorum. Sudden Oak Death Science Symposium. p. 124.
Assessment of Soil Microbial Communities Using a Combined Quantitative PCR and Length Heterogeneity Analysis Approach - (Abstract Only)
Manter, D.K., Broz, A.K., Delgado, J.A., Vivanco, J.M. 2006. Assessment of Soil Microbial Communities Using a Combined Quantitative PCR and Length Heterogeneity Analysis Approach. American Society of Agronomy Abstracts on CD ROM.
Dry biomass and nitrogen content of cover crops grown in a high altitude arid system - (Abstract Only)
Delgado, J.A., Dillon, M., Ingham, R., Sparks, R., Manter, D.K. 2005. Dry biomass and nitrogen content of cover crops grown in a high altitude arid system. American Society of Agronomy Abstracts on CD ROM.
A Climate Based Model for Predicting Geographic Variation in Swiss Needle Cast Severity in the Oregon Coastal Range - (Peer Reviewed Journal)
Manter, D.K., Reese, P.W., Stone, J. 2005. A climate based model for predicting geographic variation in Swiss needle cast severity in the Oregon coastal range. Phytopathology. 95:1256-1265.
The sporicidal activity of Chamaecyparis nootkatensis heartwood and constituents toward Phytophthora ramorum in culture - (Abstract Only)
Manter, D.K., Kelsey, R.G., Karchesy, J.J. 2005. The sporicidal activity of Chamaecyparis nootkatensis heartwood and constituents. toward Phytophthora ramorum in culture . Pacifichem Symposium.
Microfungi and canopy biology: The distribution of an endemic foliar pathogen and its effects on carbon dioxide flux - (Abstract Only)
Kerrigan, J., Stone, J., Manter, D.K., Winton, L. 2005. Microfungi and canopy biology: The distribution of an endemic foliar pathogen and its effects on carbon dioxide flux. Mycological Society of America on CD-ROM.
The Sporicidal Activity of Yellow-Cedar Heartwood, Essential Oil, and Wood Constituents Toward Phytophthora Ramorum in Culture. - (Peer Reviewed Journal)
Manter, D.K., Karchesy, J.J., Kelsey, R.G. 2006. The sporicidal activity of yellow-cedar heartwood, essential oil, and wood constituents toward phytophthora ramorum in culture. Forest Pathology. 36:297-308.
A spatial model for predicting effects of climate change on Swiss needle cast disease severity in the Pacific Northwest - (Abstract Only)
Stone, J.K., Coop, L.B., Manter, D.K. 2006. A spatial model for predicting effects of climate change on Swiss needle cast disease severity in the Pacific Northwest. Meeting Abstract. http://www.forestencyclopedia.net
Isolation and characterization of phytotoxins secreted by Phytophthora ramorum - (Proceedings)
Manter, D.K., Kelsey, R.G., Karchesy, J.J. 2005. Isolation and characterization of phytotoxins secreted by Phytophthora ramorum. Sudden Oak Death Science Symposium.
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Last Modified: 10/23/2014
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